BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18690.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480771 jgi|Araly1|480771|fgenesh2_kg.3__3472__AT2G18690.1 1810 0.0
Ahg480770 jgi|Araly1|480770|fgenesh2_kg.3__3471__AT2G18680.1 848 0.0
Ahg930823 jgi|Araly1|930823|scaffold_303280.1 580 7e-165
> Ahg480771 jgi|Araly1|480771|fgenesh2_kg.3__3472__AT2G18690.1
Length=1338
Score = 1810 bits (980), Expect = 0.0
Identities = 1198/1297 (92%), Gaps = 40/1297 (3%)
Strand=Plus/Plus
Query 120 TGGTTAGTAGTATATAAGCCCTAGACAGATAGGTTTGATCTTATAAACCCTCGCCACCAT 179
||||||||||||||||||| |||| ||||| ||||||||||||||||||||| | |||||
Sbjct 71 TGGTTAGTAGTATATAAGCACTAGGCAGATGGGTTTGATCTTATAAACCCTCACTACCAT 130
Query 180 TACCAAAAACCAATAAGCCAAGAGCTTTTCTCATTTTTCTTCTTGAAACCCATGGCTCGA 239
||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 131 TACCAAAAACCAATAAGCCAAGAGCTTTTGTCATTTTTCTTTTTGAAAGCCATGGCTCGA 190
Query 240 TTTTCCTTCTTGAATGTTGTAAAGGATGTTGTGGCTATTCTAAATGAATCCCGCAAACTG 299
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TTTTCGTTCTTGAATGTTTTAAAGGATGTTGTGGCTATTCTAAATGAATCCCGCAAACTA 250
Query 300 TTTCTCAAGAACAAAAAGTTGATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 TTTCTCAAGAACAAAAAGTTGATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGT 310
Query 360 TTAGTTTACTTCTTGAACATCTTTGTCATCGTACCGGAGATCACAAACTTGATCCTTGAA 419
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TTAGTTTACTTCTTTAACCTCTTTGTCATCGTACCGGAGATCACAAACTTGATCCTTGAA 370
Query 420 GCAAGTTTGTTGCCTTCGACAGATCCAACCTCCCCGGAATACGCAGCCCGCCTTATGAGA 479
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 371 TCAAGTTTGTTGCCTACGACAGATCCAACCTCCCCGGAATACGCAGCCCGTCTTATGAGA 430
Query 480 GTCTTTACAGATTTTCGCCAATTTGTGGGTTC-TTCATACATTTTCGCGGCTGTCTCCTC 538
|||||| |||||||||| |||||||||||| | ||||||||||||| |||| ||||||||
Sbjct 431 GTCTTTGCAGATTTTCGTCAATTTGTGGGT-CATTCATACATTTTCACGGCCGTCTCCTC 489
Query 539 CATCATCAACCTCTTTTCTGTTCTAGTCATCGTCCACGCATCGGCTATTACTCTTAAAGA 598
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 490 CATCATCAACCTCTTTTCTGTTCTAGTCATCGTCCACGCATCGGCTCTTACTTTTAAAGA 549
Query 599 TGAAAACTTCAATATCAAAGATTTTCCTGTTCTGAGCCTTAAATCTTGGAAGGGACCTCT 658
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGAAAAATTCAAGATCAAAGATTTTCCTGTTCTGAGCCTTAAATCTTGGAAGGGACCTCT 609
Query 659 TGTGACATATTTCTACATTGCTCTTTTCAGTCTTGGCTTTGGCTTCCTCTTCTTTATAAT 718
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 610 TGTGACGTATTTCTACATTGCTCTTTTCAGTCTTGGCTTTGGGTTCCTCTTCTTTATAAT 669
Query 719 CCTTTGTCCTATCCTTTTGTTCTCTATAAAATCCGGTTCCGTGGAAAATATCGGTTTCTT 778
||| |||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 670 CCTCTGTCCTGTCCTTTTGTTCTCTACAAAATTCGGTTCCGTGGCAAATATCGGTTTCTT 729
Query 779 GGCGGTCGAGGCTGGTGTTTTATTGATTATATTCACCGTCTCTCAGTCCTATTTTGCTAT 838
||| ||||||||||||| |||||||||||||||| | ||||||||||||||||| |||||
Sbjct 730 GGCAGTCGAGGCTGGTGCTTTATTGATTATATTCGCTGTCTCTCAGTCCTATTTCGCTAT 789
Query 839 CTATTGGAACTTATCTATGGTCATATCGATACTAGAGGAAAGTTATGGGTTCCAAGCTTT 898
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 790 CTATTGGAACTTATCTATGGTCATATCGATACTAGAGGAAACTTATGGGTTTCAAGCTTT 849
Query 899 GGGGAAAGCAGCAAAGATTGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAATCTTTT 958
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAATCTTTT 909
Query 959 CTTTGGTTTATTGGCATCCGGATTAGCTCAAATCTTGCAGCTGATCAATATGGGAAGATC 1018
|||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct 910 CTTTAGTTTATTGGCATTCGGATTAGCTCAAATCTTGCAGCTCATCAATTTGGGAAGATC 969
Query 1019 GTT-AGCGGTTACCTTAACCACAGGTTTTGTCCTTGTGTGTTTGGTCTTTGCGGTGAGGA 1077
||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 970 GTTCA-CGGTTACCTTAACCACCGGTTTGGTCCTTGTGTGTTTGGTCTTTGCGGTGAGGA 1028
Query 1078 TGTTTCAGCTTGTGACTTACACCGTTGCATATTTCCAATGTAAAAGCCTCCAAGGCAGAG 1137
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1029 TGTTTCAGCTTGTGACTTACACCGTTGCATATTTCCAATGTAAGAGCCTCCAAGGCAAAG 1088
Query 1138 ACGTTGAGTCGCTCAGGGATGTGGAATATATGGCATTGTCTTCCACTACT-CTCAC--GG 1194
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||
Sbjct 1089 ACGTTGAGTCGCTCAGGGATGTGGAATATATGACATTGTCTTCCACTACTACTCTCATGG 1148
Query 1195 AATGATTGCCTTGATATTTCAAGAGAAGGGCATATATGATATGATATTTAATCTGTGGAT 1254
||||||||||||||||||||||||||| |||| | || || | ||||||
Sbjct 1149 GATGATTGCCTTGATATTTCAAGAGAAG---ATAT-T--TA--AT-------CGGTGGAT 1193
Query 1255 TGTTTGTTTGTTTGAGAATATTGTTGAACTTCACCATGGATTT-GGTAAAGTATTTTGAA 1313
|||| |||||| | ||| |||||| |||||||||||||| |||||||| |||||||
Sbjct 1194 TGTT-GTTTGT---A---TAT-GTTGAAGTTCACCATGGATTTTGGTAAAGTGTTTTGAA 1245
Query 1314 TAATCAAAggttttgttacatatatgttttgttaattgttttaaggtttggttgaatata 1373
|||||||| |||| |||| |||||||||||||| || ||| ||||||||||||||||||
Sbjct 1246 TAATCAAAAGTTTGGTTAAATATATGTTTTGTT--TT-TTT-AAGGTTTGGTTGAATATA 1301
Query 1374 tttggttt---tatatata--GACATGATAGTTTTGC 1405
| |||||| |||||||| |||| |||| ||||||
Sbjct 1302 TATGGTTTGGCTATATATATAGACAAGATATTTTTGC 1338
> Ahg480770 jgi|Araly1|480770|fgenesh2_kg.3__3471__AT2G18680.1
Length=870
Score = 848 bits (459), Expect = 0.0
Identities = 754/894 (84%), Gaps = 30/894 (3%)
Strand=Plus/Plus
Query 321 ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTCTTGAACATC 380
|||||||||||||||| ||||||||||||||||||||||||||||||||| || || |
Sbjct 1 ATGTTCTCAGTCTTGGCATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAAGGCC 60
Query 381 TTTGTCATCGTACCGGAGATCACAAACTTGATCCTTGAAGCAAGTTTGTTGCCT-TCGAC 439
||| |||| ||| ||||| |||||||||||||||||| |||||||||| ||| | |||
Sbjct 61 ATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTAT-GAC 119
Query 440 AGATCCAACCTCCCCGGAATACGCAGCCCGCCTTATGAGAGTCTTTACAGATTTTCGCCA 499
|||||||| | |||||||||| ||||||| ||||||||||||||| |||||||||| ||
Sbjct 120 AGATCCAAACACCCCGGAATATGCAGCCCATCTTATGAGAGTCTTTGCAGATTTTCGTCA 179
Query 500 ATTTGTGGGTTCTTCATACATTTTCGCGGCTGTCTCCTCCATCATCAACCTCTTTTCTGT 559
||||| |||||| |||||| || ||| ||||||||||||||||||||||| ||
Sbjct 180 GTTTGTTAGTTCTTTATACATCATCTTGGCCGTCTCCTCCATCATCAACCTCTTATCCAC 239
Query 560 TCTAGTCATCGTCCACGCATCGGCTATTACTCTTAAAGATGAAAACTTCAATATCAAAGA 619
||| |||||||| |||||||||||| |||||| ||||||||| | |||| | ||||||||
Sbjct 240 TCTTGTCATCGTTCACGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGA 299
Query 620 TTTTCCTGTTCTGAGCCTTAAATCTTGGAAGGGACCTCTTGTGACAT-ATTTCTACATTG 678
||||||| |||||| |||||||| ||||||||||| ||||||||| | ||||||||||||
Sbjct 300 TTTTCCTATTCTGACCCTTAAATATTGGAAGGGACTTCTTGTGAC-TAATTTCTACATTG 358
Query 679 CTCTTTTCAGTCTTGGCT-TTGGCTTCCTCTTCTTTATAATCCTTTGTCCTATCCTTTTG 737
|||| ||||||||||||| |||| ||||| ||| |||||||||||| | ||||| ||||
Sbjct 359 CTCTCTTCAGTCTTGGCTATTGG-TTCCTATTCGTTATAATCCTTTTTTCTATCTTTTTC 417
Query 738 TTCTCTATAAAATCCGGTTCCGTGGAAAATATCGGTTTCTTGGCGGTCGAGGCTGGTGTT 797
||||||| |||| | | | | || || ||||| | | | || | |
Sbjct 418 TTCTCTACAAAA--C---T-C---G---AT-TC-----CTTGGTAGCCAAATCTCACGCT 459
Query 798 TTATTGATTATATTCACCGTCTCTCAGTCCTATTTTGCTAT-CTATTGGAACTTATCTAT 856
|||| |||| ||||| | |||| | |||| || || ||||| | |||||||||||||||
Sbjct 460 TTATGGATTCTATTCGCAGTCTTTGAGTCTTACTTAGCTATAGT-TTGGAACTTATCTAT 518
Query 857 GGTCATATCGATACTAGAGGAAAGTTATGGGTTCCAAGCTTTGGGGAAAGCAGCAAAGAT 916
||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||
Sbjct 519 GGTCATATCGATACTCGAGGAAACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGAT 578
Query 917 TGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAATCTTTTCTTTGGTTTATTGGCATC 976
|||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||
Sbjct 579 TGTTAAAGGGATGAAGCCAAAACTATTCCTCTTGAATCTTTTCTTTGGTTTATTGTCATT 638
Query 977 CGGATTAGCTCAAATCTTGCAG-CTGATCAATATGG-GAAGATCGTTAGCGGTTACCTTA 1034
||||||| ||||||||||| | |||||| || ||| | || || || |||||||||||
Sbjct 639 TGGATTAGTTCAAATCTTGC-GACTGATCGAT-TGGAGTAGTTCATTCTCGGTTACCTTA 696
Query 1035 ACCACAGGTTTTGTCCTTGTGTGTTTGGTCTTTGCGGTGAGGATGTTTCAGCTTGTGACT 1094
||||| ||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 697 ACCACCGGTTTGGTCCTTGTGAGTTCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACT 756
Query 1095 TACACCGTTGCATATTTCCAATGTAAAAGCCTCCAAGGCAGAGACGTTGAGTCGCTCAGG 1154
||||||||||| |||||||||||||| ||||| ||||||| ||||||||| ||||| |||
Sbjct 757 TACACCGTTGCCTATTTCCAATGTAAGAGCCTGCAAGGCAAAGACGTTGACTCGCTGAGG 816
Query 1155 GATGTGGAATATATGGCATTGTCTTCCACTACTCTCACGGAATGATTGCCTTGA 1208
||||||||||||| | |||||| ||||||||| ||| || | |||||||||||
Sbjct 817 GATGTGGAATATACGAAATTGTCCTCCACTACTATCATGGGAGGATTGCCTTGA 870
> Ahg930823 jgi|Araly1|930823|scaffold_303280.1
Length=880
Score = 580 bits (314), Expect = 7e-165
Identities = 593/725 (82%), Gaps = 30/725 (4%)
Strand=Plus/Plus
Query 501 TTTGTGGGTTCTTCATACATTTTCGCGGCTGT-CTCCTCCATCATCAACCTCTTTTCTGT 559
|||||||||| ||||||||| ||| ||| || ||| |||| || ||||||| |||||
Sbjct 180 TTTGTGGGTTTTTCATACATCTTCATGGCAGTATTCC-CCATTATTAACCTCTATTCTGA 238
Query 560 TCTAGTCATCGTCCACGCATCGGCTATTACTCTTAAAGATGAAAACTTCAATATCAAAGA 619
|||||||| ||| |||||||| ||| ||||||| ||| |||||||| |||| |||||| |
Sbjct 239 TCTAGTCACCGTTCACGCATCAGCTCTTACTCTGAAAAATGAAAACATCAAGATCAAATA 298
Query 620 TTTTCCTGTTCTGAGCC-TTAAATCTTGGAAGGGACCTCTTGTGACATATTTCTACATTG 678
|||||| ||| ||| || ||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 299 TTTTCCGGTTATGA-CCTTTAAATCTTGGAAGGGACCTCTTGTGACAAAATTCTATATTG 357
Query 679 CTCTTTTCAGTCTTGGCTTTGGCTTCCTCTTCTTTATAATCCTTTGTCCTATCCTTTTGT 738
||||||||| |||||||| ||| ||||| | | |||||| |||||||| | | || |
Sbjct 358 CTCTTTTCATTCTTGGCTATGGGTTCCTATACGCTATAATTTTTTGTCCTCT-C-TTAG- 414
Query 739 TCTCTATAAAATCCGGTTCCGTGGAAAATATCGGTTTCTTGGCGGTCGAGGCTGGTGTTT 798
| | | | | | || | |||| | |||||||| | | || ||| | ||
Sbjct 415 TGT-T-T----T-C--TT-C----AAAA-CTTTTTTTCTTGGTAGCCAAGTCTGTTCCTT 459
Query 799 TATTGATTATATT-CACCGTCTCTCAGTCCTATTTTGCTATC-TATTGGAACTTATCTAT 856
|||||||| |||| | |||| | |||||||||| |||||| | |||||||||||||||
Sbjct 460 TATTGATTCTATTGGA-AGTCTATGAGTCCTATTTAGCTATCGT-TTGGAACTTATCTAT 517
Query 857 GGTCATATCGATACTAGAGGAAAGTTATGGGTTCCAAGCTTTGGGGAAAGCAGCAAAGAT 916
||||||||||||||||||||||| ||||||| || ||||||| ||||||| ||||||||
Sbjct 518 GGTCATATCGATACTAGAGGAAACTTATGGGATCAAAGCTTTAAGGAAAGCTGCAAAGAT 577
Query 917 TGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAATCTTTTCTTTGGTTTATTGGCATC 976
|| ||||||||||||| ||||| | |||||||||||||||| ||| ||||||| |||
Sbjct 578 TGCTAAAGGGATGAAGCCAAAAATATTTCTCTTGAATCTTTCCTTCCATTTATTGACATT 637
Query 977 CGGATTAGCTCAAATCTTGCAGCTGATCAATATGG-GAAGATCGTTAGCGGTTACCTTAA 1035
|||||||| |||||||||||||||||| ||| ||| ||||||| || |||||||||||
Sbjct 638 CGGATTAGGTCAAATCTTGCAGCTGATAAAT-TGGAGAAGATCTTTCTCGGTTACCTTAG 696
Query 1036 CCACAGGTTTTGTCCTTGTGTGTTTGGTCTTTGCGGTGAGGATGTTTCAGCTTGTGACTT 1095
||| ||||| ||| |||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 697 CCATTGGTTTAGTCTTTGTGTGTTTGGAATTTGCGCTGATCATGTTTCAGCTTGTGACTT 756
Query 1096 ACACCGTTG-CATATTTCCAATGTAAAAGCCTCCAAGGCAGAGACGTTGAGTCGCTCAGG 1154
|||||||| | |||||||||||||| ||||||||| ||| ||| |||||||||||| ||
Sbjct 757 ACACCGTTTTC-TATTTCCAATGTAAGAGCCTCCAAAGCAAAGATGTTGAGTCGCTCGGG 815
Query 1155 GATGTGGAATATATGGCATTGTCTTCCACTACTCTCACGGAATGATTGCCTTGATATTTC 1214
||||||||||||| | |||||| |||| |||| ||| || ||||||| | ||||||| |
Sbjct 816 GATGTGGAATATACGAAATTGTCCTCCAATACTGTCATGGGATGATTGGCATGATATTCC 875
Query 1215 AAGAG 1219
|||||
Sbjct 876 AAGAG 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5