BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18710.1
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480774 jgi|Araly1|480774|fgenesh2_kg.3__3475__AT2G18710.1 2885 0.0
> Ahg480774 jgi|Araly1|480774|fgenesh2_kg.3__3475__AT2G18710.1
Length=1836
Score = 2885 bits (1562), Expect = 0.0
Identities = 1755/1845 (95%), Gaps = 25/1845 (1%)
Strand=Plus/Plus
Query 1 TCGTTGTTGTGGAGAA-G-G-AGAAGAAGGATAAGGATGATAACGGTAAGCGAAGTTTCC 57
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGTTGTTGTGGAGAAGGAGAAGAAGAAGGATAAGGATGATAACGGTAAGCGAAGTTTCC 60
Query 58 TCTTACTCTTCTTCTTCTTCAAACTTCGCGTCTCTGTCTCGTCTCAATC-ACAAATCATC 116
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 61 TCTTACTCTTCTTCTTCTTCAAACTTCGCGTCTCTGTCTCGTCTCAA-CTACAAATCATC 119
Query 117 TTCGAGATTGCGAAGCTCTTCTCTTTACAAAGGAAGCTTCTTCTCTGTTTCGACAAAGAC 176
||||||||| ||||||||||||||||| | || ||| |||||||||||||||||||||
Sbjct 120 TTCGAGATTCCGAAGCTCTTCTCTTTATAGAGCAAG---CTTCTCTGTTTCGACAAAGAC 176
Query 177 CAGGAGGAACACTTGTAAAGCCAAATCATGGAATCTCGGTCTTGTTATCAACTCTAGAAG 236
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 177 C---AGGAACACTTGTAAAGCCAAATCATGGAATCTTGGTCTCGTTATCAACTCTAGAAG 233
Query 237 CTCTGAGGCTTCGGTTTTTGATCCGTTGGGGATCAATCCAGATGAAACTTCTGGTTTAAG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CTCTGAGGCTTCGGTTTTTGATCCGTTGGGGATCAATCCAGATGAAACTTCTGGTTTAAG 293
Query 297 TAGCATTTGGGAAAGCTTTGTGAGTCTTTTGTCACCATCATTTGAAAGCTCTTCCGGTAA 356
||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||
Sbjct 294 TAGCATTTGGGAAAGCTTTGTTAGTCTTTTGTCTCCATCATATGAAAGCTCATCCGGTAG 353
Query 357 CAGGCGAGATAAGCCGTCTTCTGGTAGAGGCGTGGCAGCTGCTATTGAGGACAGTTCCAT 416
|| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 354 CAAACGAGATAAGCCGTCTTCTGGTCGGGGCGTGGCAGCTGCTATTGAGGACAGTTCCAT 413
Query 417 TGATTTTGGAGATTTCTTCAAAGGGCCATTGCCAGGGAAGTTTCTGAAGCTTCTTGGGTT 476
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||
Sbjct 414 TGATTTTGGAGATTTCTTCAAAGGGCCATTACCAGGGAAGTTTTTGAAGCTTCTTGGATT 473
Query 477 TTTAGCTCTCTCTCGGCTTGGAATTTACATACCACTCGGCGGGGTTAATCGAGAAGCTTT 536
|||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||
Sbjct 474 TTTAGCTCTCTCTCGGCTTGGAATATATATACCACTCGGTGGTGTTAATCGAGAAGCTTT 533
Query 537 TGTTGGAAATTTGGATCAGAATAGCATTTTGAGCACTTTGGATACATTTTCTGGTGGAGG 596
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 534 TGTTGGAAATTTGGATCAGAATAGCATTTTGAGCACTTTAGATACATTTTCCGGTGGAGG 593
Query 597 CATAGGTAGACTTGGTATATGTTCTCTCGGGATTGTTCCTTTCATCAACGCTCAGATTGT 656
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 594 CATTGGTAGACTTGGTATATGTTCTCTTGGGATTGTTCCTTTCATCAACGCGCAGATTGT 653
Query 657 GTTTCAGCTTCTTGCTCAAGTCTATCCAAAGTTGCAAGATCTTCAGAAAAAAGAAGGTGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTTTCAGCTTCTTGCTCAAGTCTATCCAAAGTTGCAAGATCTTCAGAAAAAAGAAGGTGA 713
Query 717 AGCTGGTAGAAAAAAGATTCTTCAGTATACTAGATATGCTTCAGTTGGTTTTGCGATAGT 776
||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 714 AGCCGGTAGAAAAAAAATTCTTCAGTACACTAGATATGCTTCAGTCGGTTTTGCAATAGT 773
Query 777 ACAAGCAATCGGACAAGTGTTTTACCTTCGTCCTTACGTTAATGACTTCAGCACGGAATG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ACAAGCAATCGGACAAGTGTTTTACCTTCGTCCTTACGTTAATGACTTCAGCACGGAATG 833
Query 837 GGTTGTTTCTTCTGTTACGTTGTTAACGCTTGGTTCTGTTCTCACTACATATATTGGAGA 896
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGTTATTTCTTCTGTTACGTTATTAACGCTTGGTTCTGTTCTCACTACATATATTGGAGA 893
Query 897 GAGAATCTCTGATCTGAAACTTGGAAATGGCACTTCCCTATTGATTTTCACAAGTATCAT 956
||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 894 GAGAATCTCTGATCTTAAACTTGGAAATGGCACTTCCCTTTTAATCTTCACAAGTATCAT 953
Query 957 CTCTTACTTGCCTGCATCATTCGGTAGAACAACAGCAGAGGCCTTACAGGAAGGAAACTA 1016
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 954 TTCTTACTTGCCTGCATCGTTCGGTAGAACAGCAGCAGAGGCCTTACAGGAAGGAAACTA 1013
Query 1017 TACTGGTCTTGGAACCATCGTTGTTTCATTTCTCCTCTTGGTACTCGGGATAGTATATGT 1076
|| |||||||| ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1014 TAGTGGTCTTGCCACCATCGTTGTCTCATTTCTCCTCTTGGTACTCGGGATTGTGTATGT 1073
Query 1077 TCAGGAAGCAGAGAGGAAAATTCCGCTCAATTATGCCTCGCGATACACCAGCAAAGCTGG 1136
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 1074 TCAGGAAGCAGAGAGGAAAATTCCACTCAATTATGCCTCGAGATACACCAGCAAAGCCGG 1133
Query 1137 TGGGCTTCAGAAATCTGCTTATCTTCCATTCAAGGTCAATAGTGCGGGAGTAATGCCTAT 1196
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1134 CGGGCTTCAGAAATCTGCTTATCTTCCATTCAAGGTCAATAGTGCTGGAGTAATGCCTAT 1193
Query 1197 CATATTCTCCACATCATCTCTTGCTCTTCCTGCTACTTTAGCACGATTTACCGGCATATC 1256
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1194 CATATTCTCCACATCATCTCTTGCTCTTCCTGCTACTCTAGCACGATTTACCGGCATATC 1253
Query 1257 TGCTTTGAAGAATGTTGCTTTTGCTTTAACCCCTGGAGGTTCTTTCTATCTTCCAACCAA 1316
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1254 TGCTCTGAAGAATGTTGCTTTTGCTTTAAACCCTGGAGGTTCTTTCTATCTTCCAACCAA 1313
Query 1317 TATACTTCTCATAGCTTTCTTCAACTACTACTACACTTTCTTGCAACTTGACCCGGACGA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TATACTTCTCATAGCTTTCTTCAACTACTACTACACTTTCTTGCAACTTGACCCGGACGA 1373
Query 1377 CGTGAGTGAACAATTAAAACGCCAAGGTGCATCAATCCCTCTAGTCCGACCTGGTAAAAG 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TGTGAGTGAACAATTAAAACGCCAAGGTGCATCAATCCCTCTAGTCCGACCTGGTAAAAG 1433
Query 1437 CACTGCTCTCTTCATCAAAACCGTCCTTGGCCGGATATCGGTTCTTGGTTCTGCATTTCT 1496
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1434 CACTGCTCTCTTCATCAAAACAGTCCTTGGTCGAATATCGGTTCTTGGTTCTGCATTTCT 1493
Query 1497 GGCTGTTCTAGCTGCTGGTCCTGCTGTAGTCGAACAGATCACTCACTTGACAGCATTCAG 1556
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GGCTGTTCTAGCTGCTGGTCCCGCTGTAGTCGAACAGATCACTCACTTGACAGCATTCAG 1553
Query 1557 AGGATTTGCAGGCACTTCTGTTCTGATCCTTGTCGGGTGTGCGACAGATACTGCAAGAAA 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AGGATTTGCAGGCACTTCTGTTCTGATCCTTGTCGGGTGTGCGACAGATACTGCAAGAAA 1613
Query 1617 GGTTCAAGCAGAGATAATCTCGCAAAAGTACAAGAACATTGAGTTTTACGAGCTTGACAA 1676
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1614 GGTTCAAGCAGAGATAATCTCGCAAAAGTACAAGAACATTGAATTTTACGAGCTTGACAA 1673
Query 1677 GTATGATCCATGAACTGG-ACC---TTCTGTTTTACATATAATACCCATCAAACCAAGTT 1732
|||||||||||||||||| ||| ||||||||||||||| ||||| ||| || ||||||
Sbjct 1674 GTATGATCCATGAACTGGTACCACCTTCTGTTTTACATATGATACC-ATCGAATCAAGTT 1732
Query 1733 ACTGTGTTCTCTTGTCATAGATT--------GTAACAAATGTTTTAAACTTTGATTAGTA 1784
||||||||||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 1733 ACTGTGTTCTCTTGTCATAGATTCAAACTATGTAACAAATATTTTAA-CTTTGATTAGTA 1791
Query 1785 TATAATGCACTTTTGTCATGAGCTTGCCAAAGGAAAGTGAAACCT 1829
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 TATAATGCACTTTTGTCATGAGCTTGCCAAAGGAAAGTGAAACCT 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68943343450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5