BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18730.1
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480776 jgi|Araly1|480776|fgenesh2_kg.3__3477__AT2G18730.1 2787 0.0
Ahg889083 jgi|Araly1|889083|Al_scaffold_0007_1069 1247 0.0
> Ahg480776 jgi|Araly1|480776|fgenesh2_kg.3__3477__AT2G18730.1
Length=1697
Score = 2787 bits (1509), Expect = 0.0
Identities = 1638/1701 (96%), Gaps = 6/1701 (0%)
Strand=Plus/Plus
Query 38 TTTCAACTCCAATTTTGATTATCTGGGTTTCGAATATTCCTCATTT-TCTCCAATCACAG 96
||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||
Sbjct 1 TTTCAACTCTAATTTTGATTATCTGGGTTACGAATATTCCTC-TTTCTCTCCAATCACAG 59
Query 97 GACGAAAAGTAATCATCTTTTTGTCTTT-TCTTCTCCGGCGAGAGACTACAATGGACTCT 155
||||||||||||||||||||| | ||| |||||||||||||||| || ||||||||||
Sbjct 60 AACGAAAAGTAATCATCTTTTTTTTTTTGTCTTCTCCGGCGAGAG--TA-AATGGACTCT 116
Query 156 CCGGTATCAAAAACCGATGCATCGAAAGAGAAATTCGTGGCTTCACGACCATCAACGGCT 215
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 117 CCGGTATCAAAAACCGATGCGTCAAAAGAGAAATTCGTGGCTTCACGACCATCAACGGCT 176
Query 216 GATTCAAAGACGATGAGAGGTTGTGGACTCGCGAATCTGGCATGGGTTGGTGTAGATAAA 275
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 177 GATTCAAAGACGATGAGAGGTTGTGGACTCGCTAATCTGACATGGGTTGGTGTAGATAAA 236
Query 276 GTAGAGCTTCGTCAGAGGTTGATGATGCCTGAGTATCTTCGTCTCGCTATGCGTGACTGT 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTAGAGCTTCGTCAGAGGTTGATGATGCCTGAGTATCTTCGTCTCGCTATGCGTGACTGT 296
Query 336 ATCAAACGCAAAGATTCCTCGGCTATTCCTGATCATTTACTTCTTCCTGGTGGTGCTGTT 395
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 297 ATCAAACGGAAAGATTCCTCGGCGATTCCTGATCATTTGCTTCTTCCTGGTGGTGCTGTT 356
Query 396 GCTGATATGGCTCCTCATGCTCCTATGGTTGTTTTCATTAACCCCAATTCTGGTGGTCGT 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCTGATATGGCTCCTCATGCTCCTATGGTTGTTTTCATTAACCCCAATTCTGGTGGTCGT 416
Query 456 CATGGTCCTGTTCTTAAAGAGAGGCTTCAACAGTTGATGAGCGAGGAACAGGTGTTTGAC 515
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CATGGACCTGTGCTTAAAGAGAGGCTTCAACAGTTGATGAGCGAGGAACAGGTGTTTGAC 476
Query 516 CTCACGGAAGTGAAGCCGCATGAGTTTGTTCGATACGGGTTGGGGTGTTTGGAGAAAGTG 575
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTCACGGAAGTGAAGCCTCATGAGTTTGTTCGATACGGGTTGGGGTGTTTGGAGAAAGTG 536
Query 576 GCAGCGGAAGGAGATGAATGTGCAAAAGAATGCAGAGCAAGGTTGAGGATTATGGTTGCA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GCAGCGGAAGGAGATGAATGTGCAAAAGAATGCAGAGCAAGGTTGAGGATTATGGTTGCA 596
Query 636 GGAGGTGATGGTACTGTTGGTTGGGTTCTTGGATGTCTTGGAGAGCTTAATAAAGATGGA 695
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 GGTGGTGATGGTACTGTTGGTTGGGTTCTTGGATGTCTTGGAGAGCTTAATAAAGAAGGA 656
Query 696 AAGTCGCAAATTCCTCCTGTTGGAGTTATTCCTCTCGGTACAGGGAATGATCTTTCAAGG 755
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 657 AAGTCTCATATTCCTCCTGTTGGAGTTATTCCTCTCGGTACAGGGAATGATCTCTCAAGG 716
Query 756 AGTTTTGGTTGGGGTGGTTCGTTTCCTTTTGCGTGGAGATCTGCTGTTAAAAGAACACTC 815
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 717 AGTTTTGGTTGGGGTGGTTCGTTCCCTTTTGCATGGAGATCCGCTGTTAAAAGAACACTC 776
Query 816 CATCGCGCAAGTATGGGTCCAGTTGCTAGACTTGACAGCTGGAAGATTTTAGTGTCAATG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CATCGCGCAAGTATGGGTCCAGTTGCTAGACTTGACAGCTGGAAGATTTTAGTGTCAATG 836
Query 876 CCATCTGGAGAAGTCGTAGATCCTCCTTATTCTTTAAAACCCGCTGAAGAAAACGAACTT 935
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 837 CCATCTGGAGAAGTCGTGGATCCTCCTTATTCTTTAAAACCCGCCGAGGAAAACGAACTT 896
Query 936 GATCAGGGTTTGGACGCGGGAATTGATGCGCCTCCACTTGCAAAGGCTTATGAAGGTGTT 995
||||||||||||||||||||||| || ||||||||||| || | || |||||||||||||
Sbjct 897 GATCAGGGTTTGGACGCGGGAATAGACGCGCCTCCACTGGCGATGGTTTATGAAGGTGTT 956
Query 996 TTCTACAATTACTTAAGCATAGGTATGGATGCTCAAGTTGCATATGGCTTCCACCATCTT 1055
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 957 TTCTACAATTACTTAAGCATAGGTATGGATGCTCAAGTTGCATATGGCTTTCACCATCTT 1016
Query 1056 CGCAACACTAAACCATATCTTGCTCAAGGCCCTATTTCAAATAAGATTATATATTCAAGT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1017 CGCAACACTAAACCATATCTTGCTCAAGGCCCTATTTCAAATAAGATTATATATTCAGGT 1076
Query 1116 TTTGGTTGCAGTCAGGGTTGGTTTTGCACGCCTTGTGTCAACGATCCAGGTTTAAGGGGA 1175
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTTGGTTGTACTCAGGGTTGGTTTTGCACGCCTTGTGTCAACGATCCAGGTTTAAGGGGA 1136
Query 1176 CTTAGGAACATAATGAAAATTCACATCAAAAAGGTTAACTGCTCTCAGTGGGAAGAGATC 1235
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1137 CTTAGGAACATAATGAAAATCCACATCAAAAAGGTTAATTGCTCTCAATGGGAGGAGATC 1196
Query 1236 GCAGTCCCGAAAAATGTGAGATCAATTGTCGCATTGAATCTTCACAGCTATGGAAGTGGA 1295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1197 GCAGTCCCGAAAAATGTGAGATCAATTGTCGCATTGAATCTTCACAGCTATGGAAGCGGA 1256
Query 1296 AGCCATCCTTGGGGCAATCTAAAACCGGACTATCTAGAGAAGAGAGGCTTTGTGGAAGCA 1355
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGCCATCCGTGGGGTAATCTGAAACCGGACTATCTAGAGAAGAGAGGCTTTGTGGAAGCA 1316
Query 1356 CATTGTGATGATGGTTTGATAGAGATTTTCGGTTTTAAGCAAGGATGGCACGCGTCATTT 1415
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1317 CATTGTGATGATGGTTTGATAGAGATTTTCGGTTTTAAGCAAGGATGGCATGCGTCATTT 1376
Query 1416 GTCATGGCTGAGCTCATCTCTGCCAAGCACATAGCTCAGGCTGCTGCGGTAAGATTTGAG 1475
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1377 GTCATGGCTGAGCTCATTTCTGCCAAACACATAGCTCAGGCTGCTGCTGTAAGATTTGAG 1436
Query 1476 CTAAGAGGAGGTGACTGGAGAGACGCATTCTTGCAAATGGATGGTGAGCCATGGAAGCAA 1535
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1437 CTAAGAGGAGGTGACTGGAGAGACGCGTTCTTGCAAATGGATGGCGAGCCATGGAAGCAA 1496
Query 1536 CCAATGAGCACTGAGTACTCAACATTTGTGGAGATCAAGAAGGTTCCTTATCAATCTCTG 1595
|||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 1497 CCAATGAGCACTGATTACTCAACATTTGTGGAGATTAAGAAGGTTCCTTTTCAATCTATG 1556
Query 1596 ATGATAAATAATGAATGATTGAGATTCAAAGCTGGATTCTTTGTACAAAGCTAATTGTTT 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 ATGATAAATAATGAATGATTGAGATTCAAAGCTGGATTCTTTGTACAAAGCTAATTGTTT 1616
Query 1656 TGTATTTGGATTTGATTCAGTTAGTCATAGATATAGCCTAAGctttttagtcttcttttc 1715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TGTATTTGGATTTGATTCAGTTAGTCATAGATATAGCCTAAGCTTTTTAGTCTTCTTTTA 1676
Query 1716 ttttaaatctgagattgtgac 1736
|||||||| | ||||||||||
Sbjct 1677 TTTTAAATATAAGATTGTGAC 1697
> Ahg889083 jgi|Araly1|889083|Al_scaffold_0007_1069
Length=1485
Score = 1247 bits (675), Expect = 0.0
Identities = 1159/1392 (83%), Gaps = 36/1392 (3%)
Strand=Plus/Plus
Query 224 GACGATGAGAGGTTGTGGACTCGCGAATCTGGCATGGGTTGGTGTAGATAAAGTAGAGCT 283
||| |||| ||||||||| | || ||||| || | ||||||| |||| | || ||||||
Sbjct 84 GACAATGAAAGGTTGTGGTTTTGCTAATCTTGCCTTGGTTGGTATAGACAGAGAAGAGCT 143
Query 284 TCGTCAGAG-GTTGATGATGCCTGAGTATCTTCGTCTCGCTATGCGTGACTGTATCAA-A 341
|||| ||| | | ||||||||||||||||||||| |||||| | || |||||||| |
Sbjct 144 TCGTGGGAGACTAG-CGATGCCTGAGTATCTTCGTCTAGCTATGAGAGATTGTATCAAGA 202
Query 342 CGCAAAGATTCCTCGGCTATTCCTGATCATTTACTTCTTCCTGGTGGTGCTGTTGCTGAT 401
| |||||||| | | |||||||||||||| || |||||||| || || | || |||
Sbjct 203 -GGAAAGATTCAACAGAGATTCCTGATCATTTGCTACTTCCTGGCGGCGCCGCCGCAGAT 261
Query 402 ATGGCTCCTCATGCTCCTATGGTTGT-TTTCATTAACCCCAATTCTGGTGGTCGTCATGG 460
||||||||||| || ||||||||||| ||| |||||||| || |||||||||||| ||
Sbjct 262 ATGGCTCCTCACGCGCCTATGGTTGTGTTT-ATTAACCCGAAAAGTGGTGGTCGTCACGG 320
Query 461 TCCTGTTCTTAAAGAGAGGCTTCAACAGTTGATGAGC-GAGGAACAGGTGTTTGACCTCA 519
||||||||||||||||||||||||||| ||||||| | || |||||||| ||||| ||||
Sbjct 321 TCCTGTTCTTAAAGAGAGGCTTCAACAATTGATGA-CTGAAGAACAGGTATTTGATCTCA 379
Query 520 CGGAAGTGAAGCCGCATGAGTTTGTTCGATACGGGTTGGGGTGTTTGGAGAAAGTGGCAG 579
| || |||||||| ||||| ||||| || ||||| |||||||| ||||||| | |||||
Sbjct 380 CTGAGGTGAAGCCTCATGAATTTGTACGGTACGGTTTGGGGTGCTTGGAGACATTGGCAT 439
Query 580 CGGAAGGAGATGAATGTGCAAAAGAATGCAGAGCAAGGTTGAGGATTATGGTTGCAGGAG 639
| |||||||||||||||||| ||||||||||| || | || | || ||||| ||||| |
Sbjct 440 TGAAAGGAGATGAATGTGCAAGAGAATGCAGAGAAAAGATGCGTATCATGGTAGCAGGTG 499
Query 640 GTGATGGTACTGTTGGTTGGGTTCTTGGATGTCTTGGAGAGCTTAATAAAGATGGAAAGT 699
|||||||||| ||||||||||||||||||||||| || |||||| ||||||| ||||| |
Sbjct 500 GTGATGGTACCGTTGGTTGGGTTCTTGGATGTCTCGGTGAGCTTCATAAAGACGGAAAAT 559
Query 700 CGCAAATTCCTCCTGTTGGAGTTATTCCTCTCGGTACAGGGAATGATCTTTCAAGGAGTT 759
| || |||||||||||||||||||| |||||||||||||| ||||| || || |||||||
Sbjct 560 CACATATTCCTCCTGTTGGAGTTATCCCTCTCGGTACAGGAAATGACCTCTCCAGGAGTT 619
Query 760 TTGGTTGGGGTGGTTCGTTTCCTTTTGCGTGGAGATCTGCTGTTAAAAGAACACTCCATC 819
|||||||||||||||| || |||||||| |||||||||||| | ||||||||| | ||||
Sbjct 620 TTGGTTGGGGTGGTTCATTCCCTTTTGCTTGGAGATCTGCTATGAAAAGAACATTACATC 679
Query 820 GCGCAAGTATGGGT-CCAGTTGCTAGACTT-GACAGCTGGAAGATTTTAGTGTCAATGCC 877
| |||| | | ||| || ||| || || || ||||||||||||||| |||||||||||||
Sbjct 680 GAGCAACTTTAGGTTCC-GTTTCTCGA-TTAGACAGCTGGAAGATTGTAGTGTCAATGCC 737
Query 878 ATCTGGAGAAGTCGTAGATCCTCCTTATTCTTTAAAACCCGC--T-GAAGAAAAC-GAAC 933
||||||||||||||| ||||||||||||||||| || || | | || |||| | | ||
Sbjct 738 ATCTGGAGAAGTCGTTGATCCTCCTTATTCTTTGAAGCCTACAATAGAGGAAA-CTGCAC 796
Query 934 TTGATCAGGGTTTGGACGC-G--GGA-ATTGA--TGCGCCTCC-ACTTGCAAAGGCTTAT 986
||||||||| |||||| || | ||| || || || ||||| | |||||| |||||
Sbjct 797 TTGATCAGGCTTTGGATGCTGATGGAGATGGAAATGTACCTCCTAAA-GCAAAGTCTTAT 855
Query 987 GAAGGTGTTTTCTACAATTACTTAAGCATAGGTATGGATGCTCAAGTTGCATATGGCTTC 1046
||||| || |||||||| ||||| ||||||||||||||||||||||||||||| || |||
Sbjct 856 GAAGGAGTGTTCTACAACTACTTTAGCATAGGTATGGATGCTCAAGTTGCATACGGATTC 915
Query 1047 CACCATCTTCGCAAC-ACTAAACCATATCTTGCTCAAGGCCCTATTTCAAATAAGATTAT 1105
|| ||||||||||| | ||||| ||||| |||||||| ||| || |||||||||||||
Sbjct 916 CATCATCTTCGCAATGAG-AAACCGTATCTAGCTCAAGGACCTGTTACAAATAAGATTAT 974
Query 1106 ATATTCAAGTTTTGGTTGCAGTCAGGGTTGGTTTTGCACGCCTTGTGTCAACGATCCAGG 1165
||||||||||| |||| | ||| ||||||||||||||||||||||||||| |||||||
Sbjct 975 ATATTCAAGTTACAGTTGTACTCAAGGTTGGTTTTGCACGCCTTGTGTCAACAATCCAGG 1034
Query 1166 TTTAAGGGGACTTAGGAACATAATGAAAATTCACATCAAAAAGGTTAACTGCTCTC-AGT 1224
|||||||||||| || |||||||||||||| ||||| ||||||| || ||||| | | |
Sbjct 1035 TTTAAGGGGACTAAGAAACATAATGAAAATCCACATTAAAAAGGCAAATTGCTC-CGAAT 1093
Query 1225 GGGAAGAGATCGCA-GTCCCGAAAAATGTGAGATCAATTGTCGCATTGAATCTTCACAGC 1283
||||||||||| || ||||| |||| ||||||||| ||||| | |||||||||| | | |
Sbjct 1094 GGGAAGAGATC-CATGTCCCTAAAAGTGTGAGATCGATTGTGGTATTGAATCTTTATAAC 1152
Query 1284 TATGGAAGTGGAAGCCATCCTTGGGGCAATCTAAAACCGGACTATCTAGAGAAG-AGAG- 1341
|||||||||||||| ||||| ||||| ||||| | ||| | ||| |||||||| ||||
Sbjct 1153 TATGGAAGTGGAAGACATCCATGGGGTAATCTCAGACCAAAATATTTAGAGAAGCAGAGA 1212
Query 1342 GC-TTTGTGGAAGCACATTGTGATGATGGTTTGATAGAGATTTTCGGTTTTAAGCAAGGA 1400
| |||||||| || |||||||| || || |||||||||| |||||||| ||||||||
Sbjct 1213 GGATTTGTGGAGGCGCATTGTGACGACGGGCTGATAGAGATATTCGGTTTAAAGCAAGGT 1272
Query 1401 TGGCACGCGTCATTTGTCATGGCTGAGCTCATCTCTGCCAAGCACATAGCTCAGGCTGCT 1460
||||| || |||||||| |||||| | ||||||| || |||||||| |||||||| |||
Sbjct 1273 TGGCATGCTTCATTTGTAATGGCTCAAATCATCTCAGCTAAGCACATTGCTCAGGCGGCT 1332
Query 1461 GCGGTAAGATTTGAGCTAAGAGGAGGTGACTGGAGAGACGCATTCTTGCAAATGGATGGT 1520
|| | |||||||| |||||||||||||| |||| | | || ||||||||||||||||||
Sbjct 1333 GCTATTAGATTTGAACTAAGAGGAGGTGATTGGAAAAATGCGTTCTTGCAAATGGATGGT 1392
Query 1521 GAGCCATGGAAGCAACCAATGA-GCACTGAGTACTCAACATTTGTGGAGATCAAGAAGGT 1579
||||||||||| ||||| |||| | | ||| || || || ||||| ||||| || |||||
Sbjct 1393 GAGCCATGGAAACAACCGATGAAG-AGTGATTATTCGACTTTTGTAGAGATAAAAAAGGT 1451
Query 1580 TCCTTATCAATC 1591
||||| ||||||
Sbjct 1452 TCCTTTTCAATC 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69438516635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5