BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18740.1
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931887 jgi|Araly1|931887|scaffold_304344.1 501 3e-141
> Ahg931887 jgi|Araly1|931887|scaffold_304344.1
Length=307
Score = 501 bits (271), Expect = 3e-141
Identities = 296/308 (96%), Gaps = 2/308 (1%)
Strand=Plus/Plus
Query 94 GATTTCCAACTACGTTAGCCATGGCGAGCACCAAAGTTCAAAGGATTATGACCCAACCTA 153
|||| ||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTACCAGCTCCGGCAGCCATGGCGAGCACCAAAGTTCAAAGGATTATGACCCAACCTA 60
Query 154 TCAACTTGATTTTTAGGTTTCTTCAAAGTAAAGCTAGGATCCAGATTTGGCTATTTGAGC 213
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCAACTTGATTTTTAGGTTTCTTCAAAGTAAAGCTAGGATCCAGATTTGGCTGTTTGAGC 120
Query 214 AGAAAGATTTGAGGATTGAAGGAAGAATCACTGGTTTTGACGAATACATGAATCTAGTTT 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 121 AGAAAGATTTGAGGATTGAAGGAAGAATCACTGGTTTTGACGAATACATGAATCTGGTGT 180
Query 274 TGGATGAGGCTGAAGAAGTGAGCATCAAGAAGAACACCAGGAAACCACTTGGAAGGATTT 333
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TGGATGAGGCCGAAGAAGTGAGCATCAAGAAAAACACCAGGAAACCACTTGGAAGGATTT 240
Query 334 TACTCAAAGGAGACAACATAACTCTGATGATGAACACGGGAAAGTGATGTCTGTCTCAAA 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACTCAAAGGAGACAACATAACTCTGATGATGAACACGGGAAAGTGATGTCTGTCTCAA- 299
Query 394 CAA-CTCT 400
||| ||||
Sbjct 300 CAAACTCT 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24741773133
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5