BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18740.1 Length=674 Score E Sequences producing significant alignments: (Bits) Value Ahg931887 jgi|Araly1|931887|scaffold_304344.1 501 3e-141 > Ahg931887 jgi|Araly1|931887|scaffold_304344.1 Length=307 Score = 501 bits (271), Expect = 3e-141 Identities = 296/308 (96%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 94 GATTTCCAACTACGTTAGCCATGGCGAGCACCAAAGTTCAAAGGATTATGACCCAACCTA 153 |||| ||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATTACCAGCTCCGGCAGCCATGGCGAGCACCAAAGTTCAAAGGATTATGACCCAACCTA 60 Query 154 TCAACTTGATTTTTAGGTTTCTTCAAAGTAAAGCTAGGATCCAGATTTGGCTATTTGAGC 213 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 TCAACTTGATTTTTAGGTTTCTTCAAAGTAAAGCTAGGATCCAGATTTGGCTGTTTGAGC 120 Query 214 AGAAAGATTTGAGGATTGAAGGAAGAATCACTGGTTTTGACGAATACATGAATCTAGTTT 273 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 121 AGAAAGATTTGAGGATTGAAGGAAGAATCACTGGTTTTGACGAATACATGAATCTGGTGT 180 Query 274 TGGATGAGGCTGAAGAAGTGAGCATCAAGAAGAACACCAGGAAACCACTTGGAAGGATTT 333 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 TGGATGAGGCCGAAGAAGTGAGCATCAAGAAAAACACCAGGAAACCACTTGGAAGGATTT 240 Query 334 TACTCAAAGGAGACAACATAACTCTGATGATGAACACGGGAAAGTGATGTCTGTCTCAAA 393 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACTCAAAGGAGACAACATAACTCTGATGATGAACACGGGAAAGTGATGTCTGTCTCAA- 299 Query 394 CAA-CTCT 400 ||| |||| Sbjct 300 CAAACTCT 307 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24741773133 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5