BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18770.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480853 jgi|Araly1|480853|fgenesh2_kg.3__3554__AT2G18770.1 1572 0.0
Ahg893406 jgi|Araly1|893406|Al_scaffold_0006_1402 549 1e-155
> Ahg480853 jgi|Araly1|480853|fgenesh2_kg.3__3554__AT2G18770.1
Length=1081
Score = 1572 bits (851), Expect = 0.0
Identities = 1014/1092 (93%), Gaps = 14/1092 (1%)
Strand=Plus/Plus
Query 12 AACAACAACAATTTCGCCGGCGTCGTCGTCGTCGTCTCTCCATCACCGTCTCTGCTGCAT 71
||||||||||||||||||||||||||| || | || ||||||||||||| ||||||| |
Sbjct 1 AACAACAACAATTTCGCCGGCGTCGTC-TC--C-TC-CTCCATCACCGTCGCTGCTGCTT 55
Query 72 TGATTCGCAGCACTGAGTCCTAAATT-TCCAGTGTaaaaaaaaT-CA-GAAAATGGACAA 128
|||||||||||| |||||||| ||| | | ||| || | || ||||||||| ||
Sbjct 56 TGATTCGCAGCAGTGAGTCCT-CATTGT-TA-TGTTTTGAAGGTGCACGAAAATGGATAA 112
Query 129 CTTGGAAGATTTGAAGATTGTGGCAGAGCAGTGGTCTAAACAAGGACTTGAATTTGTTCA 188
||||||||| |||||||||||| |||||||||||| ||||||||| |||||||||||||
Sbjct 113 CTTGGAAGACTTGAAGATTGTGACAGAGCAGTGGTGGAAACAAGGAATTGAATTTGTTCA 172
Query 189 AAAAATACCACCACCTCAGCTTTATACTGCCATTGGTGTTCTCTTATTAGCTACCATTTG 248
| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 173 ACAGATACCACCGCCTCAGCTTTATACTGCTATTGGTGTTCTCTTATTAGCTACCATTTG 232
Query 249 GCTCTTATCTATTCGTTTGTTTAGACGTACAAAATCCAATACTGTACTCCTCTCTGGGCT 308
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 233 GCTCTTATCTATTCGTTTGTTTAGGCGTACAAAGTCCAATACTGTACTCCTCTCTGGGCT 292
Query 309 AAGTGGAAGTGGCAAAACAGTTCTCTTCTATCAACTACGAGATGGATCTTCCCATCAGGG 368
||||||||||||||||||| | ||||||| ||||||||| ||||||||||| || || ||
Sbjct 293 AAGTGGAAGTGGCAAAACAATGCTCTTCTTTCAACTACGTGATGGATCTTCGCACCAAGG 352
Query 369 TGCTGTAACGTCAATGGAACCGAACGAAGGCACCTTTGTGCTTCACAATGAAAACAACAC 428
||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 353 TGCTGTAACGTCAATGGAACCAAACGAAGGCACCTTTGTGCTTCACAATG--AA-AACAC 409
Query 429 TAAGAAAGGAAAAGTAAAGCCTGTTCATCTTATTGATGTTCCTGGACACTCTCGGCTTAT 488
|| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 410 TATGAAAGGAAAAATAAAGCCTATTCATCTTGTTGATGTTCCTGGACACTCTCGGCTTAG 469
Query 489 ATCTAAGCTAGAAGAATACTTGCCTCGAGCCGCCGCTGTTGTGTTTGTAGTAGATGCATT 548
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 470 ATCTAAGCTAGAAGAATACTTGCCTCGAGCAGCCGCTGTTGTGTTTGTAGTAGATGCATT 529
Query 549 GGAGTTCCTCCCAAATATCCGGGCAGCTTCAGAGTACCTTTACGACATTCTGACCAATGC 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 530 GGAGTTCCTCCCAAATATCCGGGCAGCTTCAGAGTACCTTTACGACATTCTGACAAATGC 589
Query 609 TAGCGTTATTAAGAATAAGACCCCGGTTCTGCTTTGCTGTAACAAGACAGATAAAGTAAC 668
||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 590 TAGCGTTGTTAAGAATAAGATCCCGGTTCTGCTTTGCTGTAACAAGACAGACAAAGTAAC 649
Query 669 TGCACACACCAAAGAGTTCATCCGCAAGCAGATGGAGAAAGAAATAGATAAACTTAGGGT 728
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 650 TGCACACACCAAAGAGTTCATCCGCAAGCAGATGGAGAAAGAAATAGAGAAACTTAGGGT 709
Query 729 TTCGAGGAGCGCAATATCAACAGCTGATATAGCGAATGACTTCACTCTTGGGATTGAAGG 788
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 710 TTCGAGGAGCGCGATATCAACAGCTGATATAGCGAATGACTTCACTCTCGGGATTGAAGG 769
Query 789 AGAAGTGTTTTCCTTTTCGCATTGCCATAACAAAGTCACGGTCGCTGAGGCGTCTGGACT 848
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 770 AGAAGTGTTTTCCTTTTCGCATTGCCAGAACAAAGTCACGGTCGCTGAGGCGTCTGGACT 829
Query 849 AACAGGAGAAACAGATCAGGTACAAGAGTTCATCAGAGAACACGTAAAGCCATGAGGATT 908
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 830 AACAGGAGAAACAGATCAGGTACAAGAGTTCATCAGAGAACACGTTAAGCCATGAGAAAT 889
Query 909 GTGTAAGCATCTCAGAGAATGTACTTAAATGTCTTTTCATTTGTTTGTAAATGAAATTAT 968
|||| ||||| |||||||||| |||||||||||||||||||| |||||| ||||||||||
Sbjct 890 GTGTGAGCATATCAGAGAATGAACTTAAATGTCTTTTCATTTTTTTGTACATGAAATTAT 949
Query 969 AATTTGAGAACTTAGATGATATTCGTTGGAAGGATTTTTGGATGTTGAAAACGTGTTTAC 1028
|||||||||| |||||||||||| ||||||||||||| ||||||| |||||| ||||||
Sbjct 950 AATTTGAGAATTTAGATGATATTTGTTGGAAGGATTTCTGGATGTCGAAAACTTGTTTAA 1009
Query 1029 TGCATCGACTGGATCTTTTAGCGTTTCATCCAAGCAACCTCACTATCAATAAATTGTTTA 1088
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 1010 TGCATCGACTGGATCTTTTAGCGTTTTGTCCAAGCAACCTCACTATAAATAAATTGTTAA 1069
Query 1089 CAAAGACAGTTT 1100
|| |||||||||
Sbjct 1070 CACAGACAGTTT 1081
> Ahg893406 jgi|Araly1|893406|Al_scaffold_0006_1402
Length=762
Score = 549 bits (297), Expect = 1e-155
Identities = 544/651 (84%), Gaps = 65/651 (10%)
Strand=Plus/Plus
Query 313 GGAAGTGGC--AA--AACAGTTCTCTTCTATCAACTACGAGATGGATCTTCCCATCAGGG 368
||||||||| || |||||| |||||| ||| ||| ||||||| || ||| |||| |||
Sbjct 132 GGAAGTGGCAAAATTAACAGTGCTCTTCAATCGACTCCGAGATGAATATTCGCATCGGGG 191
Query 369 TGCTGTAACGTCAATGGAACCGAACGAAGGCACCTTTGTGCTTCACAATGAAAA-CAAC- 426
|| ||||||||||||||||||||||||| |||||| ||||||||||| | |||| | ||
Sbjct 192 TGTTGTAACGTCAATGGAACCGAACGAAAGCACCTCTGTGCTTCACACT-AAAATC-ACT 249
Query 427 A--CTA-AGAAAG---G--A-----A----A--AG-TAAA-G---CCTGTTCATCTTATT 462
| || |||||| | | | | | ||| | |||||||||||| ||
Sbjct 250 ATGGTAGAGAAAGATCGTCATTTTGAGTGGATCGGAAAAACGAAACCTGTTCATCTT-TT 308
Query 463 -GATGTTCCTGGACACTCTCGGCTTATATCTAAGCTAGAAGAATACTTGCCTCGAGCCGC 521
||||||||||| |||||| | |||||||||||||||||||||||| ||| |
Sbjct 309 GGATGTTCCTGGGCACTCT---C------CTAAGCTAGAAGAATACTTGCCTCTAGCAAC 359
Query 522 CGCTGTTGTGTTTGTAGTAGATGC-ATTGGAGTTCCTCCCAAA-TATCCGGGCAGCTTCA 579
| || |||||||||| | |||||| | |||||||||||||||| | | ||||||||||||
Sbjct 360 CACTCTTGTGTTTGTCGCAGATGCGA-TGGAGTTCCTCCCAAATTGT-CGGGCAGCTTCA 417
Query 580 GAGTACCTTTACGACATTCTGACCAATGCTAGCGTTATTA-AGAATAAGACCCCGGTTCT 638
||||||||||||||||||||||||||||| ||||| ||| | ||||||| |||||||||
Sbjct 418 GAGTACCTTTACGACATTCTGACCAATGCGGGCGTTGTTACA-AATAAGATCCCGGTTCT 476
Query 639 GCTTTGCTGTAACAAGACAGATAAAGTAACTGCACACACCAAAGAGTTCATCCGCAAGCA 698
|||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct 477 GCTTTGCTGTAACAAGACAGATAAAGTAACTGCATACACCAAAGATTTCATCAGCAAGCA 536
Query 699 GATGGAGAAAGAAATAGATAAACTTAGGGTTTCGAGGAGCGCAATATCAACAGCTGATAT 758
|||||||||| ||||||| |||||||||||||||||||||||||||||| |||| || ||
Sbjct 537 GATGGAGAAACAAATAGAGAAACTTAGGGTTTCGAGGAGCGCAATATCATCAGC-GA-AT 594
Query 759 AGCGAATGACTTCACTCTTGGGATTGAAGGAGAAGTGTTTTCCTTTTCGCATTGCCATAA 818
| | ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 595 -G--A----CTTCACTCTCGGGATTGAAGGAGAAGTGTTTTCTTTTTCGCATTGCCATAA 647
Query 819 CAAAGTCACGGTCGCTGAGGCGTCTGGACTAACAGGAGAAACAGATCAGGTACAAGAGTT 878
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 648 CAAAGTCACGGTCGCTGAGACGTCTGGACTAACAGGAGAAACAGATCAGCTACAAGAGTT 707
Query 879 CATCAGAGAACACGT-A-AAGCCATGAGGATTGTGTAAGCATCTCAGAGAA 927
|||||||||||||| | || ||| | || |||| ||||||||| ||||
Sbjct 708 CATCAGAGAACACGCCAGAA-CCAA-A--AT-GTGTGAGCATCTCAAAGAA 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5