BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18770.1 Length=1103 Score E Sequences producing significant alignments: (Bits) Value Ahg480853 jgi|Araly1|480853|fgenesh2_kg.3__3554__AT2G18770.1 1572 0.0 Ahg893406 jgi|Araly1|893406|Al_scaffold_0006_1402 549 1e-155 > Ahg480853 jgi|Araly1|480853|fgenesh2_kg.3__3554__AT2G18770.1 Length=1081 Score = 1572 bits (851), Expect = 0.0 Identities = 1014/1092 (93%), Gaps = 14/1092 (1%) Strand=Plus/Plus Query 12 AACAACAACAATTTCGCCGGCGTCGTCGTCGTCGTCTCTCCATCACCGTCTCTGCTGCAT 71 ||||||||||||||||||||||||||| || | || ||||||||||||| ||||||| | Sbjct 1 AACAACAACAATTTCGCCGGCGTCGTC-TC--C-TC-CTCCATCACCGTCGCTGCTGCTT 55 Query 72 TGATTCGCAGCACTGAGTCCTAAATT-TCCAGTGTaaaaaaaaT-CA-GAAAATGGACAA 128 |||||||||||| |||||||| ||| | | ||| || | || ||||||||| || Sbjct 56 TGATTCGCAGCAGTGAGTCCT-CATTGT-TA-TGTTTTGAAGGTGCACGAAAATGGATAA 112 Query 129 CTTGGAAGATTTGAAGATTGTGGCAGAGCAGTGGTCTAAACAAGGACTTGAATTTGTTCA 188 ||||||||| |||||||||||| |||||||||||| ||||||||| ||||||||||||| Sbjct 113 CTTGGAAGACTTGAAGATTGTGACAGAGCAGTGGTGGAAACAAGGAATTGAATTTGTTCA 172 Query 189 AAAAATACCACCACCTCAGCTTTATACTGCCATTGGTGTTCTCTTATTAGCTACCATTTG 248 | | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 173 ACAGATACCACCGCCTCAGCTTTATACTGCTATTGGTGTTCTCTTATTAGCTACCATTTG 232 Query 249 GCTCTTATCTATTCGTTTGTTTAGACGTACAAAATCCAATACTGTACTCCTCTCTGGGCT 308 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 233 GCTCTTATCTATTCGTTTGTTTAGGCGTACAAAGTCCAATACTGTACTCCTCTCTGGGCT 292 Query 309 AAGTGGAAGTGGCAAAACAGTTCTCTTCTATCAACTACGAGATGGATCTTCCCATCAGGG 368 ||||||||||||||||||| | ||||||| ||||||||| ||||||||||| || || || Sbjct 293 AAGTGGAAGTGGCAAAACAATGCTCTTCTTTCAACTACGTGATGGATCTTCGCACCAAGG 352 Query 369 TGCTGTAACGTCAATGGAACCGAACGAAGGCACCTTTGTGCTTCACAATGAAAACAACAC 428 ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| Sbjct 353 TGCTGTAACGTCAATGGAACCAAACGAAGGCACCTTTGTGCTTCACAATG--AA-AACAC 409 Query 429 TAAGAAAGGAAAAGTAAAGCCTGTTCATCTTATTGATGTTCCTGGACACTCTCGGCTTAT 488 || |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 410 TATGAAAGGAAAAATAAAGCCTATTCATCTTGTTGATGTTCCTGGACACTCTCGGCTTAG 469 Query 489 ATCTAAGCTAGAAGAATACTTGCCTCGAGCCGCCGCTGTTGTGTTTGTAGTAGATGCATT 548 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 470 ATCTAAGCTAGAAGAATACTTGCCTCGAGCAGCCGCTGTTGTGTTTGTAGTAGATGCATT 529 Query 549 GGAGTTCCTCCCAAATATCCGGGCAGCTTCAGAGTACCTTTACGACATTCTGACCAATGC 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 530 GGAGTTCCTCCCAAATATCCGGGCAGCTTCAGAGTACCTTTACGACATTCTGACAAATGC 589 Query 609 TAGCGTTATTAAGAATAAGACCCCGGTTCTGCTTTGCTGTAACAAGACAGATAAAGTAAC 668 ||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 590 TAGCGTTGTTAAGAATAAGATCCCGGTTCTGCTTTGCTGTAACAAGACAGACAAAGTAAC 649 Query 669 TGCACACACCAAAGAGTTCATCCGCAAGCAGATGGAGAAAGAAATAGATAAACTTAGGGT 728 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 650 TGCACACACCAAAGAGTTCATCCGCAAGCAGATGGAGAAAGAAATAGAGAAACTTAGGGT 709 Query 729 TTCGAGGAGCGCAATATCAACAGCTGATATAGCGAATGACTTCACTCTTGGGATTGAAGG 788 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 710 TTCGAGGAGCGCGATATCAACAGCTGATATAGCGAATGACTTCACTCTCGGGATTGAAGG 769 Query 789 AGAAGTGTTTTCCTTTTCGCATTGCCATAACAAAGTCACGGTCGCTGAGGCGTCTGGACT 848 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 770 AGAAGTGTTTTCCTTTTCGCATTGCCAGAACAAAGTCACGGTCGCTGAGGCGTCTGGACT 829 Query 849 AACAGGAGAAACAGATCAGGTACAAGAGTTCATCAGAGAACACGTAAAGCCATGAGGATT 908 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | Sbjct 830 AACAGGAGAAACAGATCAGGTACAAGAGTTCATCAGAGAACACGTTAAGCCATGAGAAAT 889 Query 909 GTGTAAGCATCTCAGAGAATGTACTTAAATGTCTTTTCATTTGTTTGTAAATGAAATTAT 968 |||| ||||| |||||||||| |||||||||||||||||||| |||||| |||||||||| Sbjct 890 GTGTGAGCATATCAGAGAATGAACTTAAATGTCTTTTCATTTTTTTGTACATGAAATTAT 949 Query 969 AATTTGAGAACTTAGATGATATTCGTTGGAAGGATTTTTGGATGTTGAAAACGTGTTTAC 1028 |||||||||| |||||||||||| ||||||||||||| ||||||| |||||| |||||| Sbjct 950 AATTTGAGAATTTAGATGATATTTGTTGGAAGGATTTCTGGATGTCGAAAACTTGTTTAA 1009 Query 1029 TGCATCGACTGGATCTTTTAGCGTTTCATCCAAGCAACCTCACTATCAATAAATTGTTTA 1088 |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| | Sbjct 1010 TGCATCGACTGGATCTTTTAGCGTTTTGTCCAAGCAACCTCACTATAAATAAATTGTTAA 1069 Query 1089 CAAAGACAGTTT 1100 || ||||||||| Sbjct 1070 CACAGACAGTTT 1081 > Ahg893406 jgi|Araly1|893406|Al_scaffold_0006_1402 Length=762 Score = 549 bits (297), Expect = 1e-155 Identities = 544/651 (84%), Gaps = 65/651 (10%) Strand=Plus/Plus Query 313 GGAAGTGGC--AA--AACAGTTCTCTTCTATCAACTACGAGATGGATCTTCCCATCAGGG 368 ||||||||| || |||||| |||||| ||| ||| ||||||| || ||| |||| ||| Sbjct 132 GGAAGTGGCAAAATTAACAGTGCTCTTCAATCGACTCCGAGATGAATATTCGCATCGGGG 191 Query 369 TGCTGTAACGTCAATGGAACCGAACGAAGGCACCTTTGTGCTTCACAATGAAAA-CAAC- 426 || ||||||||||||||||||||||||| |||||| ||||||||||| | |||| | || Sbjct 192 TGTTGTAACGTCAATGGAACCGAACGAAAGCACCTCTGTGCTTCACACT-AAAATC-ACT 249 Query 427 A--CTA-AGAAAG---G--A-----A----A--AG-TAAA-G---CCTGTTCATCTTATT 462 | || |||||| | | | | | ||| | |||||||||||| || Sbjct 250 ATGGTAGAGAAAGATCGTCATTTTGAGTGGATCGGAAAAACGAAACCTGTTCATCTT-TT 308 Query 463 -GATGTTCCTGGACACTCTCGGCTTATATCTAAGCTAGAAGAATACTTGCCTCGAGCCGC 521 ||||||||||| |||||| | |||||||||||||||||||||||| ||| | Sbjct 309 GGATGTTCCTGGGCACTCT---C------CTAAGCTAGAAGAATACTTGCCTCTAGCAAC 359 Query 522 CGCTGTTGTGTTTGTAGTAGATGC-ATTGGAGTTCCTCCCAAA-TATCCGGGCAGCTTCA 579 | || |||||||||| | |||||| | |||||||||||||||| | | |||||||||||| Sbjct 360 CACTCTTGTGTTTGTCGCAGATGCGA-TGGAGTTCCTCCCAAATTGT-CGGGCAGCTTCA 417 Query 580 GAGTACCTTTACGACATTCTGACCAATGCTAGCGTTATTA-AGAATAAGACCCCGGTTCT 638 ||||||||||||||||||||||||||||| ||||| ||| | ||||||| ||||||||| Sbjct 418 GAGTACCTTTACGACATTCTGACCAATGCGGGCGTTGTTACA-AATAAGATCCCGGTTCT 476 Query 639 GCTTTGCTGTAACAAGACAGATAAAGTAACTGCACACACCAAAGAGTTCATCCGCAAGCA 698 |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| Sbjct 477 GCTTTGCTGTAACAAGACAGATAAAGTAACTGCATACACCAAAGATTTCATCAGCAAGCA 536 Query 699 GATGGAGAAAGAAATAGATAAACTTAGGGTTTCGAGGAGCGCAATATCAACAGCTGATAT 758 |||||||||| ||||||| |||||||||||||||||||||||||||||| |||| || || Sbjct 537 GATGGAGAAACAAATAGAGAAACTTAGGGTTTCGAGGAGCGCAATATCATCAGC-GA-AT 594 Query 759 AGCGAATGACTTCACTCTTGGGATTGAAGGAGAAGTGTTTTCCTTTTCGCATTGCCATAA 818 | | ||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 595 -G--A----CTTCACTCTCGGGATTGAAGGAGAAGTGTTTTCTTTTTCGCATTGCCATAA 647 Query 819 CAAAGTCACGGTCGCTGAGGCGTCTGGACTAACAGGAGAAACAGATCAGGTACAAGAGTT 878 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 648 CAAAGTCACGGTCGCTGAGACGTCTGGACTAACAGGAGAAACAGATCAGCTACAAGAGTT 707 Query 879 CATCAGAGAACACGT-A-AAGCCATGAGGATTGTGTAAGCATCTCAGAGAA 927 |||||||||||||| | || ||| | || |||| ||||||||| |||| Sbjct 708 CATCAGAGAACACGCCAGAA-CCAA-A--AT-GTGTGAGCATCTCAAAGAA 753 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41096504526 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5