BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18780.1
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480852 jgi|Araly1|480852|fgenesh2_kg.3__3553__AT2G18780.1 1456 0.0
Ahg479142 jgi|Araly1|479142|fgenesh2_kg.3__1843__AT3G16740.1 468 5e-131
Ahg929516 jgi|Araly1|929516|scaffold_301973.1 130 3e-29
Ahg929515 jgi|Araly1|929515|scaffold_301972.1 65.8 8e-10
> Ahg480852 jgi|Araly1|480852|fgenesh2_kg.3__3553__AT2G18780.1
Length=1323
Score = 1456 bits (788), Expect = 0.0
Identities = 1000/1102 (91%), Gaps = 15/1102 (1%)
Strand=Plus/Plus
Query 37 CAACGACGATGCTCTCGGATCTTCCAAAGGATGTGGCGGAGGAGGTGCTCTCGAAGTTTC 96
|||||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 1 CAACGACGATGCTCTCCGATCTTCCAAAGGATTTGGCAGAGGAGGTGCTCTCTAAGTTTC 60
Query 97 CAGTGACATCTCTGAGAAGAGTACGATTCACATGCAA-AAAGTTGAACACTTTATCCAAA 155
| |||||||||||||||||||| |||||||| ||||| ||| | |||||| |||||||||
Sbjct 61 CGGTGACATCTCTGAGAAGAGTGCGATTCACTTGCAAGAAA-TGGAACACATTATCCAAA 119
Query 156 GATATGTCTTTTACAAGGAAGCACATCGATAAAGAAGAAGCAAAGAAGAAGCAG-AGTAA 214
||| ||||||||||||||||||||| |||||||||||||||||||||| |||| || ||
Sbjct 120 GATGGGTCTTTTACAAGGAAGCACATTGATAAAGAAGAAGCAAAGAAGAGGCAGAAG-AA 178
Query 215 GGAGTTTCATGTTGTGATGATGCTCGATTTTAGGGTTTCTTTATTCAGTCTCAATCTACT 274
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 179 GGAGTTTCACGTTGTGATGATGCTCGATTTTAGGGTTTCTTTATTCAGCCTCAATCTTCT 238
Query 275 -AAACCCTAATCCCATAGAGCGTTTAGGTCAACTTGTTAGCTTAGACGGTGGTGCA-CAA 332
||| |||||| | |||||||||||||||||||| ||||| |||| | || || | |||
Sbjct 239 CAAA-CCTAATTGCGTAGAGCGTTTAGGTCAACTTATTAGCCTAGATGATGCTG-ATCAA 296
Query 333 GTCGACATATCTAACATTTTTCACTGCGAGGGTTTCTTGTTATGCACCACTAAAGACATA 392
|||||||| |||||||| ||||||||||| ||||||||| | |||||||| ||||||||
Sbjct 297 GTCGACATTTCTAACATCTTTCACTGCGATGGTTTCTTGCTGTGCACCACCAAAGACATG 356
Query 393 TCTAGGGTTGTTGTTTGGAACCCTTGTGTTGGGCAAACAATTTGGATCAAACCCAGAAAC 452
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 TCTAGGCTTGTTGTTTGGAACCCTTGTGTTGGGCAAACAATTTGGATCAACCCCAGAAAA 416
Query 453 TCTTTCAACAAATGGGATAGGTATGCTCTGGGCTACGATGTGATGAAGAATCATAAAGTT 512
||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 417 TCTTTCAACAAATTGGATAGGTACGCTTTGGGTTACGATGTGATGAAGAATCATAAAGTT 476
Query 513 TTGAGATTTGTGGATGACGGTGAGTATGGAA-GGAGACACTTACTTTGTGAGTTTGAAAT 571
||||||||||||||| || || | ||| ||| || || ||||||| |||||||||||||
Sbjct 477 TTGAGATTTGTGGATCACTGTAACTATAGAACTGA-ACCCTTACTTCGTGAGTTTGAAAT 535
Query 572 CTACAGTTTTGAGTCTGATTCATGGGAGGTTCTTGATGTGAATCCGGATTGGGAGATAGA 631
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 536 CTATAGTTTTGAGTCTGATTCATGGAAGGTTCTTGATGTGAATCCGGATTGGGAGGTAGA 595
Query 632 TTTTGTTCACCGTGGTTTGTCTATCGATGGAAACAGTTACTGGTTTGC-ACGAGACAAGG 690
|||||||||||||||||||||| | ||||| |||||||| |||||||| | |||||||||
Sbjct 596 TTTTGTTCACCGTGGTTTGTCTGTTGATGGGAACAGTTATTGGTTTGCTA-GAGACAAGG 654
Query 691 TTGTTCCATATGGAGGACAAGATCCTTCTTATTTCTTGCTGTGTTTTGATTTCACAACGG 750
| ||| |||||| || || || ||| |||||||||||||||||||||||||||||||
Sbjct 655 -T-TTCTATATGG-GGGGGAGGTCATTCGTATTTCTTGCTGTGTTTTGATTTCACAACGG 711
Query 751 AGAGATTTAGACCGCCTCTGCCTCTGCCATTTCAGCCTTACTTTGGTGATACTGTGGCTC 810
|||||||| |||||| |||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct 712 AGAGATTTGGACCGCGTCTGGCTCTGCCTTTTCAGCCTTTCTTTGGTGATACTGTGGCTC 771
Query 811 TATCTAGCGTTGGGGATAACCAGATTGCGGTCTTGTGTCAGCGGTCTTCTTCGCCGTATA 870
||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 772 TATCTAGTGTTGGGGATAACCAGATTGCGGTGTTGTGTCAGCTGTCTTCTTCTCCGTATA 831
Query 871 CCTTGAAGATATGGATTAGCAGCAAGGTTGAGCCCAATGCAGTGTCGTGGAACAAGTTGT 930
| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 832 CATTGAAGATATGGATTAGCAGCAAGATTGAACCCAATGCAGTGTCGTGGAACAAGTTGT 891
Query 931 TCTTAAAGGTTGACATGAAACCTCTCACTGGTAATTCCTTCTCTTATTCGGGTGGGAGTT 990
||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 892 TCTTAAAGGTTGATATGAAACCTCTCACTGGTGTTTCGTTCTCTTATTCGGGTGGGAGTT 951
Query 991 TCTTTGTTGACGAGGAGAAGAAGATGGCTGTGGTTCTTGATAAAAACATAGGTGGTGGAT 1050
|||| ||||| |||||||||||| | || ||||||||||||||||| || ||||||||||
Sbjct 952 TCTTCGTTGATGAGGAGAAGAAGGTTGCCGTGGTTCTTGATAAAAAAATTGGTGGTGGAT 1011
Query 1051 TTGACCCGACTCGCAACATAGCTTACATCATTGGAAAGGAGGGCTACTTCAAGAAAGTTG 1110
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1012 TTGACCCAACTCGAAACATAGCTTATATCATTGGAAAGGAGGGCTACTTCAAGAAAGTTG 1071
Query 1111 ATCTTGGCGAATCTAGGCACCT 1132
||||||||||||||||| ||||
Sbjct 1072 ATCTTGGCGAATCTAGGAACCT 1093
Score = 110 bits (59), Expect = 4e-23
Identities = 95/111 (86%), Gaps = 7/111 (6%)
Strand=Plus/Plus
Query 1132 TCTAGGCACCTAACTTGTTGGCCACTTGGGTGCTCTTATATTCCCAGCTCTCTGCAAATC 1191
|||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 1213 TCTAGGAACCTAACTTGTTGGCCACTTGGGTGCTCTTATGTTCCCAGCTCTGTCCAAATC 1272
Query 1192 AATCAGAATACAGCCTAATC-------CAACGTCTTTGTCTAGTAGATTTT 1235
|| || || ||||||||||| | |||||||||||| |||||||||
Sbjct 1273 AACCACAAAACAGCCTAATCTTTGTGTCCACGTCTTTGTCTTGTAGATTTT 1323
> Ahg479142 jgi|Araly1|479142|fgenesh2_kg.3__1843__AT3G16740.1
Length=1369
Score = 468 bits (253), Expect = 5e-131
Identities = 855/1133 (75%), Gaps = 92/1133 (8%)
Strand=Plus/Plus
Query 51 TCGGATCTTCCAAAGGATGTGGCGGAGGAGGTGCTCTCGAAGTTTCCAGTGACATCTCTG 110
|||||||||||| |||| || | |||||||||||||| | | |||| ||||||||| ||
Sbjct 81 TCGGATCTTCCACGGGATTTGACAGAGGAGGTGCTCTCTAGGCTTCCGGTGACATCTATG 140
Query 111 AGAAG-AGTACGATTCACATGCAAAAAGTT-GAACACTTTATCCAAAGATATG-TCTTTT 167
|| || ||| ||||| || |||||||| || ||| | |||||| |||||| | | |||
Sbjct 141 AG-AGCAGTGCGATTTACTTGCAAAAA-TTGGAATAGTTTATCGAAAGATCGGAGC-TTT 197
Query 168 ACAAGGAAGCACAT-C---GA-TAA-AGAAGAAGCAAAGAAGAAGCAGA-GTAAGGAGTT 220
| || ||||||| | | || || | || ||| ||||||||||||| | ||||||||
Sbjct 198 AGAAAGAAGCACCTGCGTGGAGCAATATCAGCAGCGAAGAAGAAGCAGACG-AAGGAGTT 256
Query 221 TCATGTTG-TGATGATG-CTCGATTTTAGGGTTTCTTTATTCAGTC-TCAATCTACTAAA 277
||| | || | |||||| || | | |||||||| ||||||||| | ||||||| || ||
Sbjct 257 TCA-GGTGATCATGATGATTC-AATATAGGGTTTATTTATTCAG-CGTCAATCTCCTCAA 313
Query 278 CCCTAATCCCATAGAGCGTTTAGGTCAACTTGTTAGCTTAGACGGTGGTGCA-CAAGTCG 336
|| || | ||||||||| ||||| ||||| ||||| |||||| || | | | ||||
Sbjct 314 TCC--AT-CTATAGAGCGTATAGGTAAACTTATTAGCCTAGACGTTGAAG-ATCGTGTCG 369
Query 337 ACATATCTAACATTTTTCACTGCGAGGGTTTCTTGTTATGCACCACTAAAGACATATCTA 396
| |||||||| || ||||||||| | ||||| |||||||||| ||| |||||||||||||
Sbjct 370 ATATATCTAAAATCTTTCACTGCCACGGTTTATTGTTATGCATCACCAAAGACATATCTA 429
Query 397 GGGTTGTTGTTTGGAACCCTTGTGT-TGGGCAAACAATTTGGATCAAACCCAGAAACTCT 455
|| |||| ||||||||||||| | ||||||||| | |||||| |||| ||||| |||
Sbjct 430 GGCTTGTGGTTTGGAACCCTT-ACTCTGGGCAAACTAGGTGGATCCAACCTAGAAATTCT 488
Query 456 TTCAACAAATGGGATAGGTATGCTCTGGGCTACGATGTGATGAA-GA---A--TC--A-- 505
| | ||| || ||| ||||| ||| | || || || | || ||| | | || |
Sbjct 489 TACCACAGATTGGACAGGTACGCTTTAGGATATGAAGAGAAGAACAATTCATGTCGTAGC 548
Query 506 T--AAAGTTTTGAGATTTGTGGATGACGGTGAGTATGG-AAGGAGACA-CTTA-CT--TT 558
| ||| | ||||||||| ||||| | | | | || | | || | || || ||
Sbjct 549 TACAAAATCTTGAGATTTATGGAT-A--ATTACCAGGGCGACAACCCACCGTACCTAGTT 605
Query 559 -GTGAGTTTGAAATCTACAG-TTTTGAGTCTGATTCATGGGAGGTTCTTGATGTGAATCC 616
||||||||||||||||| | || | |||||||||||| ||||| ||||||| |||
Sbjct 606 CGTGAGTTTGAAATCTAC-GACTTAAACTCTGATTCATGGAAGGTTGTTGATGTCCCTCC 664
Query 617 GGATTGGGAGATAGA-TTTTGTTCACCGTGGTTTGTCTATCGATGGAAACAGTTACTGGT 675
|| ||||| ||||| | || ||||||||| |||||| || | || || | ||||||||
Sbjct 665 TGACTGGGAAATAGAGTATT-ATCACCGTGGCTTGTCTCTCAAGGGGAATACTTACTGGT 723
Query 676 TTGCACGAGACAAG-GT----TGTT-CCATAT-GGAGGACAAG-ATC--CT-T--CTTAT 722
|||| | ||| ||| | | || ||| | ||| || | ||| | | || ||
Sbjct 724 TTGCTCAAGAGAAGCTTCCAATATTCCCA-CTCGGAAGAGTGGTATCAGATATGGCTGAT 782
Query 723 TTCTTGCTGTGTTTTGATTTCACAACGGAGAGATTTAGACCGCCTCTGCCTCTGCCATTT 782
||||| || ||||||||||| |||| |||||| ||| |||||| |||||||||||| |||
Sbjct 783 TTCTTACTCTGTTTTGATTTTACAAGGGAGAGGTTTGGACCGCGTCTGCCTCTGCCTTTT 842
Query 783 CAGC-CTTACT-TTGGTGATACTGTGGCTCTATCTAGCGTTGGGGATAACCAGA-TTGCG 839
|| | ||| | ||| ||||||||| |||||||||| ||| | ||||| || | ||||
Sbjct 843 CA-CTCTT-TTGTTGAAGATACTGTGACTCTATCTAGTGTTAGAGATAAGCA-ACTTGCA 899
Query 840 GTCTTGTGTCAGCGGTCTTCTTCGCCGTATACCTTGAAGATATGGATTAGCAGCAAGGTT 899
|| || | ||||| | || | | | | |||| |||||||||||||||| |||||| ||
Sbjct 900 GTGTTATTTCAGCCATGTT-AT-G-CATCTACCGTGAAGATATGGATTAGTAGCAAGATT 956
Query 900 GAGCCCAATGCAGTGTCGTGGAACAA-GTTGTTCTTAAAGGTTGACATGAAACCTCTCAC 958
|||||||||||||||||||||| || ||| |||||| |||||| |||||||| |||||
Sbjct 957 GAGCCCAATGCAGTGTCGTGGAGGAAGGTT-TTCTTAGCGGTTGATATGAAACCACTCAC 1015
Query 959 TGGTAATTC--CTTCTC-TT-ATTCGGGTGGGAGTTTCTTTGTTGACGAGGAGAAGAAGA 1014
|||| ||| || | || | || ||||||||||||||||||| || |||| |||
Sbjct 1016 TGGT-TTTCAGTTTGACATTAACTC---TGGGAGTTTCTTTGTTGACCAGAAGAAAAAGG 1071
Query 1015 TGGCTGTGGTTCTTGATAAAAACATAGGTGGT-GGATTTGACCCGACTCGCAACATAGCT 1073
| || |||||||||||||| || || | | ||| | | |||||||||||||||
Sbjct 1072 TCGCCATGGTTCTTGATAAAGAC--AGAT--TCAGATCTAAATTAACTCGCAACATAGCT 1127
Query 1074 TACATCATTGGAAAGGAGGGCTACTTCAAGAAAGTTG-ATCTTGGCGAATCTA 1125
||||||||||||||| |||| || ||||| |||| || ||||||| |||||||
Sbjct 1128 TACATCATTGGAAAGAAGGGGTATTTCAA-AAAGGTGGATCTTGGAGAATCTA 1179
> Ahg929516 jgi|Araly1|929516|scaffold_301973.1
Length=1193
Score = 130 bits (70), Expect = 3e-29
Identities = 578/808 (72%), Gaps = 96/808 (12%)
Strand=Plus/Plus
Query 363 GGTTTCTTGTTATGCACCACTAAAG-ACAT-AT-CTAGGGTTGTTGTTTGGAACCCTTGT 419
||||| |||||||||| ||| |||| | || || | ||| |||| |||||||||||||||
Sbjct 360 GGTTTGTTGTTATGCATCACCAAAGAATATAATCCGAGGCTTGTGGTTTGGAACCCTTGT 419
Query 420 GT-TGGGCAAACAATTTGGATCAAACCCAGAAACTCTTTCAACAAATGGGATAGGTATGC 478
| ||| ||||||| |||||| |||| ||| |||| | ||||| | | | |||||
Sbjct 420 -TCTGGACAAACAAGGTGGATCGAACCTAGAGGTTCTTACCACAAAAAGAACAACTATGC 478
Query 479 TCTGGGCTACGATG-TGATGAA-GAA-----TC--A--TA-AAG-TTTTGAGAT-TTGTG 524
||| || ||||| | ||| ||| || || | || ||| ||||||||| || ||
Sbjct 479 TCTCGGATACGA-GATGAAGAACAAATCTTGTCGAAGCTACAAGATTTTGAGATATT-TG 536
Query 525 GATGACG-GTG--AGTA-TGGAAGGAGACACTTACT-TTGTGAGTTTGAAATCTACAGTT 579
|||| || || | || || || | || | || | |||||||||| ||||||||| ||
Sbjct 537 GATG-CGTATGACATTAGTGTAA-G-GATTC-TA-TATTGTGAGTTTCAAATCTACAATT 591
Query 580 TTGAGTCTGATTCATGGGAGGTTCTTGATGTGAATCC-GGATTGGGAGATAGATT-TTGT 637
|||| ||| | |||||| ||| | || | | | ||| | ||| | ||| ||| ||
Sbjct 592 TTGATTCTAACTCATGGAAGGCTGTTCAGGCCACTCCTCG-CTGGAATATACATTATT-A 649
Query 638 TCACCGTGGTTTGTCTATCGATGGAAACAGTTACTGGTTTGCACGAGACAAGGTTG-TTC 696
||| ||||| ||||| || | ||||| | |||||||||||| | | ||| | |
Sbjct 650 TCAACGTGGGGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTC---A-AAGCACGAAT- 704
Query 697 CATATGGAGGACA-AGATCCTTCTTATTTCTTGCTGTGTTTTGATTTCACAACGGAGAGA 755
| || |||||| | || | |||||| | | | ||||||||||| ||| | ||||||
Sbjct 705 C-TA-GGAGGATATAG-T--TTCTTA---C-T--T-TGTTTTGATTTTACAGCTGAGAGA 752
Query 756 TTTAGACCGCCTCTGCCTCTGCC-A-TTT-CAGCCTTACTTTGGTGATACTGTGGCTCTA 812
||| |||||||||||||| |||| | ||| || | || ||| ||||| ||| |||||
Sbjct 753 TTTGGACCGCCTCTGCCTATGCCTATTTTCCA-CGTT--GTTGAAGATACCGTGACTCTA 809
Query 813 TCTAGCGTTGGGGATAACCAGA-TTGCGGTCTTGTGTCAGCGGTCTTCTTCGCCGTATAC 871
||||| || | ||| | || | | || || || | | ||| | | | | | | | |||
Sbjct 810 TCTAGTGTCAGAGATGAGCA-ACTCGCAGTGTTATTTAAGC-GACGTGGT-G-CAT-TAC 864
Query 872 CT-TGAAGATATGGATTAGCAGCA--AGGTTGAGCCCA-ATGCA-GTGTCGTGGA--A-C 923
| || |||||||||||| | | | || ||| ||||| | | | |||||||||| | |
Sbjct 865 ATATGGAGATATGGATTA-C-GTATGAGATTGGGCCCAGA-G-AGGTGTCGTGGAGGAGC 920
Query 924 AAGTTGTTCTTAAAGGTTG-ACATGAAACC-TCTCACTGGT-AATTCCTTCTC-TTATTC 979
|||||||||||| || || | || ||||| | | ||| | || || | | | | |
Sbjct 921 AAGTTGTTCTTAGCGG-TGAATATAAAACCAT-TTACTTATCGATACC--CACGTGA-AC 975
Query 980 GGGTGGGAGTTTCTTTGTTGACGAGGAGAAGAA-GATGGCTGTGGTTCTTGATAAAAACA 1038
|||||||||||||||||||||||||||||| | | || |||||| ||| || | ||
Sbjct 976 --ATGGGAGTTTCTTTGTTGACGAGGAGAAGAAAG-TCGCCGTGGTTTTTGGTAGAGACT 1032
Query 1039 TAGGTGGTGGATTTGACC-CGACTCGCAACATAGCTTACATCATTGGAAAGGAGGGCTAC 1097
| || || | ||||| | | |||| || |||||| |||| |||||| || || |||
Sbjct 1033 T-GGA--TGAACCTGACCAC-ATTCGCGACGCAGCTTATATCACTGGAAAAGATGGATAC 1088
Query 1098 TTCAAGAAAGTTGATCTTGGCGAATCTA 1125
|| |||||||| |||||||| |||||||
Sbjct 1089 TTGAAGAAAGTGGATCTTGGAGAATCTA 1116
> Ahg929515 jgi|Araly1|929515|scaffold_301972.1
Length=943
Score = 65.8 bits (35), Expect = 8e-10
Identities = 113/147 (77%), Gaps = 19/147 (13%)
Strand=Plus/Plus
Query 877 AGATATGGATTAGCAG-C-AAGGTTGAGCCCAATGCA-GTGTCGT---GGAACAAGTTGT 930
|||||||||||| | | | || |||||||||| | | |||| || ||| ||||||||
Sbjct 763 AGATATGGATTA-C-GACTGAGATTGAGCCCAAAG-AGGTGTGGTGGGGGAGCAAGTTGT 819
Query 931 TCTTAAAGGTTG-ACATGAAA-CCTCTCACTGGTAATTC-CTTCTCTTATTCG--GGTGG 985
|||||| || || | || ||| || || ||| || | || ||| | ||| | ||||
Sbjct 820 TCTTAACGG-TGAATAT-AAATCCACTTACTTGTTA-TCAATTC-C-CATTTGAACGTGG 874
Query 986 GAGTTTCTTTGTTGACGAGGAGAAGAA 1012
|||||||||||||||||||||||||||
Sbjct 875 GAGTTTCTTTGTTGACGAGGAGAAGAA 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50932217112
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5