BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18800.1
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343582 jgi|Araly1|343582|fgenesh1_pg.C_scaffold_3003345 1487 0.0
Ahg950444 jgi|Araly1|950444|scaffold_802331.1 222 3e-57
> Ahg343582 jgi|Araly1|343582|fgenesh1_pg.C_scaffold_3003345
Length=915
Score = 1487 bits (805), Expect = 0.0
Identities = 883/920 (96%), Gaps = 7/920 (1%)
Strand=Plus/Plus
Query 36 ATGGTTTCT-AGTACACTTTTGGTTATGTCAATATCTCTCTTTCTTGGTTTAAGCATATT 94
||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1 ATGGTTTCTCA-TACACTTTTGGTTATGTCAATATCTCTCTTTCTTTGTTTAAACATATT 59
Query 95 GCTTGTTGTACACGGTAAAGATTTCAACCAAGACATTGACATAACCTGGGGTGATGGTAG 154
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 GCTTGTTGTACACGCTAAAGATTTAAACCAAGACATTGACATAACCTGGGGTGATGGTAG 119
Query 155 AGGAAATATTTTGAACAATGGTACTCTTCTAAATCTCGGTCTTGATCAATCTTCGGGTTC 214
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 120 AGGAAATATTTTGAGCAATGGTACTCTTCTAAATCTCGTTCTTGATCAATCTTCGGGATC 179
Query 215 AGGGTTTCAATCGAAAGCCGAGTATTTGTACGGAAAAGTT-GATATGCAGATCAAACTTG 273
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 180 AGGGTTTCAATCGAAAGCCGAGTATTTGTACGGAAAA-TTCGATATGCAGATCAAACTTG 238
Query 274 TCCCGGGAAATTCAGCCGGGACCGTGACCACCTTCTACTTGAAGTCTCAAGGATTAACAT 333
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 TCCCGGGAAATTCAGCCGGGACCGTGACCACCTTCTATTTGAAGTCTCAAGGATTAACAT 298
Query 334 GGGACGAGATAGATTTCGAGTTTTTGGGGAATGTTAGTGGAGATCCATACATTGTTCACA 393
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 299 GGGACGAGATAGATTTCGAGTTTTTGGGTAATGTTAGTGGAGATCCTTACATTGTTCACA 358
Query 394 CTAATGTTTACACTCAAGGCAAGGGTGATAGAGAGCAACAATTCTACCTTTGGTTCGATC 453
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 CTAATGTTTACACTCAAGGCAAAGGTGATAGAGAGCAACAATTCTACCTTTGGTTCGATC 418
Query 454 CAACAGCCGCGTTCCACAACTACTCTATTCTATGGAATCCGAGTCACATAGTGTTCTATA 513
||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 CAACAGCTGAGTTCCACAACTACTCCATTCTATGGAATCCGAGTCACATAGTGTTCTATA 478
Query 514 TTGATGGGAAGCCAATCAGAGAATTCAAGAACTTGGAAGTATTGGGTGTGGCTTATCCAA 573
|||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 479 TTGATGGGAAGCCAATTAGAGAATTCAAGAATTTGGAAGCATTGGGTGTGGCTTATCCAA 538
Query 574 AGAACCAACCCATGAGAATGTATGGAAGTCTATGGAACGCAGACGATTGGGCCACGAGGG 633
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 AAAACCAACCCATGAGAATGTATGGTAGTCTATGGAACGCAGACGATTGGGCCACGAGGG 598
Query 634 GAGGGCTGGTAAAGACAAACTGGTCACAGGGACCATTCGTAGCCTCTTTCATGAACTACA 693
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGGGCTGGTTAAGACAAACTGGTCACAGGGACCATTCGTAGCCTCTTTCATGAACTACA 658
Query 694 ACTCCGAGAATGCTTGTGTTTGGTCCATCGTTAATGGAACCACAACTACTTCTCCTTGTA 753
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 ACTCCGAGAATGCTTGTGTTTGGTCCATCGTTAATGGAACCACAACTATTTCTCCTTGTA 718
Query 754 GCCCCGGTGACTCGACTTCTTCTTCTTCGAGCAGTACTAGCGAGTGGTTTTCGCAGAGAG 813
||||||||| |||| | |||||||||||||||||| ||||||||||||||| |||||||
Sbjct 719 GCCCCGGTGGCTCG--T-CTTCTTCTTCGAGCAGTAGTAGCGAGTGGTTTTCACAGAGAG 775
Query 814 GGATGGATTCTTCAAGCAAGAAAGTTCTTAGATGGGTTCAGAGGAAGTTCATGGTTTACA 873
|||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 776 GGATGGATTCTTCAAGTAAGAAAGTTCTTAGATGGGTTCAGAAGAAGTTTATGGTTTACA 835
Query 874 ATTATTGTAAGGACAAGAAGCGATTCTCTAATGGTTTGCCTGTTGAATGCACTGCTAAGA 933
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 ATTATTGTAAGGACAAGAAGCGATTCTCTAAGGGTTTGCCTGTTGAATGCACTGCTAAGA 895
Query 934 ACAAGAACACAAAGTCTTGA 953
||||| ||||||| ||||||
Sbjct 896 ACAAGGACACAAACTCTTGA 915
> Ahg950444 jgi|Araly1|950444|scaffold_802331.1
Length=890
Score = 222 bits (120), Expect = 3e-57
Identities = 405/539 (75%), Gaps = 33/539 (6%)
Strand=Plus/Plus
Query 125 AGACATTGACATAACCTGGGGTGATGGTAGAGGAAATATTTTGAACAATGGTA-CTCTTC 183
|||| |||| || || |||||||||||| | ||| | || ||||||||| | ||||
Sbjct 93 AGACGTTGAGATCACTTGGGGTGATGGTCGTGGACAGATCAAGAACAATGG-AGAGCTTC 151
Query 184 TAAATCTCGGTCTTGATCAATCTTCGGGTTCAGGGTTTCAATCGAAAGCCGAGTATTTGT 243
| | | | ||| ||| |||| || ||||| || || ||||| ||| ||| || ||||
Sbjct 152 TTACTTTATCTCTAGATAAATCCTCTGGTTCTGGATTCCAATCCAAAAACGAATACTTGT 211
Query 244 ACGG-AAAAGT-TGATATGCAGATCAAACTTGTCCCGGGAAATTCAGCCGGGACCGTGAC 301
||| |||| | | ||||| || || |||||||| ||||| || || || ||||| ||
Sbjct 212 TCGGTAAAA-TCT-CCATGCAAATGAAGCTTGTCCCTGGAAACTCCGCAGGAACCGTCAC 269
Query 302 CAC-CTTCTACTTGAAGTCTCAAGGATTAACATGGGACGAGATAGATTTCGAGTTTTTGG 360
|| | |||||||||| || | ||| ||||||||||||||||||||||||||||||||
Sbjct 270 AACAC-TCTACTTGAAATCACCTGGAACAACATGGGACGAGATAGATTTCGAGTTTTTGG 328
Query 361 GGAATGTTA-GTGGAGATCCATACATTGTTCACACTAATGTTTACACTCAAGGCAAGGGT 419
| ||| | | |||||||||| |||| ||||||| ||||| ||||| |||||||| ||
Sbjct 329 GTAAT-TCAAGTGGAGATCCTTACACACTTCACACAAATGTCTACACGCAAGGCAAAGGA 387
Query 420 GATAGAGAGCAACAATTCTACCTTTGGTTCGATCCAACAGCCGCGTTCCACAACT-ACTC 478
|| | ||| ||||||||| | || ||||| ||||||||||| | ||||||| || || |
Sbjct 388 GACAAAGAACAACAATTCAAACTCTGGTTTGATCCAACAGCTGATTTCCACA-CTTACAC 446
Query 479 TATTCTATGGAATCCGAGTCACATAGTGTTCTAT-AT--T-GATGGGAAG-CCAATCAGA 533
||||| ||||| || | || | | | ||| | | | ||||| || ||||| |||
Sbjct 447 CATTCTCTGGAACCC-A--CAAAGAATCATCT-TCACCGTCGATGG-AACTCCAATTAGA 501
Query 534 GAATTCAAGAACTTGGAAGTAT-TGGG---TGTGGCTTATCCAAAGAACCAACCCATGAG 589
|||||||||||| |||| || | | || | || || ||| |||||| |||| |||||
Sbjct 502 GAATTCAAGAACATGGA-GTCTCTAGGCACTCTG--TT-TCCCAAGAACAAACCAATGAG 557
Query 590 AATGTA-TGGAAGTCTATGGAACGCAGACGATTGGGCCACGAGGGGAGGGCTGGT-AAA 646
||||| | | |||| |||||||| || |||||||| ||||| || || |||| |||
Sbjct 558 GATGTACTCTA-GTCTTTGGAACGCTGATGATTGGGCAACGAGAGGTGGTTTGGTCAAA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35378066976
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5