BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18840.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480849 jgi|Araly1|480849|fgenesh2_kg.3__3550__AT2G18840.1 1426 0.0
Ahg491725 jgi|Araly1|491725|fgenesh2_kg.7__1158__AT4G30260.1 697 0.0
> Ahg480849 jgi|Araly1|480849|fgenesh2_kg.3__3550__AT2G18840.1
Length=890
Score = 1426 bits (772), Expect = 0.0
Identities = 865/907 (95%), Gaps = 18/907 (2%)
Strand=Plus/Plus
Query 35 TTTGGCCCTAAATCACTTTCCCGGGAAAATCAAACTCTGGGGAAAGAGTTGAAACAATGT 94
||| |||||||||||||||||||||||||||||||||| ||| || | |||| |||||
Sbjct 1 TTTTGCCCTAAATCACTTTCCCGGGAAAATCAAACTCT-GGG-AA-A---GAAA-AATGT 53
Query 95 CACAAGGCGATACAGTACCGCTTCATCCATCGTCTCAATCAGACATTGACGAGATCGAGA 154
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 54 CACAAGGCGATACAGTACCGCTTCATTCATCGTCTCAATCAGACATTGACGAGATCGAGA 113
Query 155 ATCTGATTAACGAAAGCGTCCAATCAGGTCCCGGAACCGTTCTCGCCGCTCGTCCACCGA 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ATCTGATTAACGAAAGCGTCCAATCAGGTCCCGGAACCGTTCTCGCCGCTCGTCCACCGA 173
Query 215 GCCCAACCAGACCTTCGATTCCAGTAtcttcttcttcttcttcttctCCGTTTATGCAAT 274
||||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 174 GCCCAACCAGACCGTCGATTCCAG--------T-TTCTTCTTCTTCTCCGTTTATGCAAT 224
Query 275 CGAATCTTCCACCGCTTCATCCGTCGTCATCAGCTCAGAAAGTGACACATGTCCCCGTTC 334
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 225 CGAATCTTCCTCCGCTTCATCCGTCGTCATCAGCTCAGAAAGTGACACCTGTCCCCGTTC 284
Query 335 CTCCGCCTCTTCCGGCGGTAAGTAACTCCAGCAATTTCCAAGGAGCGAGTGCTTTTGGAT 394
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 285 CTCCGCCTCTTCCGGCGGTAAGTAATTCTAGCAATTTCCAAGGAGCGAGTGCGTTTGGAT 344
Query 395 CTCCGCCTAATACGTTGACGGAGCCTGTGTGGGATACTGTGAAGCGAGATCTGTCTCGGA 454
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 345 CTCCGCCTAATACGTTGACGGAGCCTGTGTGGGATACTGTGAAACGAGATCTGTCTCGGA 404
Query 455 TCGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAATCCGTATAGGGAAGATCCTGGGAAGG 514
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 405 TTGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAATCCGTATAGAGAAGATCCTGGGAAGG 464
Query 515 CTCTTAGAGATTGGGATCTTTGGGGTCCGTTTTTCTTCATTGTGTTCTTGGGTCTT-ACT 573
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 465 CTCTTAGAGATTGGGATCTTTGGGGTCCGTTTTTCTTCATTGTGTTCTTGGG-ATTGACT 523
Query 574 CTTTCATGGTCAGCTTCCGTCAAGAAGTCCGAGGTATTTGCAGTGGCATTTGCACTATTA 633
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 524 CTTTCATGGTCAGCTTCCGTTAAGAAGTCCGAGGTATTTGCAGTGGCATTTGCACTATTA 583
Query 634 GCAGCCGGGGCGGTGATCCTTACACTAAACGTGCTTCTCCTGGGTGGACATATAATCTTC 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GCAGCCGGGGCGGTGATCCTTACACTAAACGTGCTTCTCCTGGGTGGACATATAATCTTC 643
Query 694 TTCCAAAGCTTGAGCCTTCTAGGTTACTGTTTATTTCCGCTAGACGTTGGAGCCGTGATC 753
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 644 TTCCAAAGCTTGAGCCTTCTAGGTTACTGTTTATTTCCACTAGACGTTGGAGCTGTGATC 703
Query 754 TGCATGTTGAAAGACAATGTGATACTGAAGATGGTGGTTGTGTCTGTAACCCTTGCCTGG 813
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 704 TGCATGTTGAAAGACAATGTGATACTGAAGATTGTGGTTGTGTCGGTAACGCTTGCATGG 763
Query 814 AGCTCATGGGCTGCTTACCCTTTTATGAGCTCAGCGGTTAACCCAAGAAGAAAAGCACTC 873
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 764 AGCTCATGGGCTGCTTACCCTTTCATGAGCTCAGCGGTTAACCCAAGAAGAAAAGCACTC 823
Query 874 GCTCTATACCCCGTCTTCCTCATGTATGTGTCAGTCGGTTTTCTCATCATAGCCATCAAT 933
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 824 GCTCTATACCCCGTCTTCCTCATGTATGTATCAGTCGGTTTCCTCATCATCGCCATCAAT 883
Query 934 TGAATCC 940
| |||||
Sbjct 884 TAAATCC 890
> Ahg491725 jgi|Araly1|491725|fgenesh2_kg.7__1158__AT4G30260.1
Length=1220
Score = 697 bits (377), Expect = 0.0
Identities = 720/879 (82%), Gaps = 49/879 (6%)
Strand=Plus/Plus
Query 85 GAAACAATGT--CACAAGGCGATACAG-TACCGCTTCATCCATCGTCTCAATCAGACATT 141
|||| ||||| ||||| |||||| | | |||||| ||| ||| ||||||||||||||
Sbjct 115 GAAA-AATGTCGCACAA--CGATAC-GATTCCGCTTTATCAATCATCTCAATCAGACATC 170
Query 142 GACGAGATCGAGAATCTGATTAACGAAAGCGTCCAATCAGGTCCCGGAACCGTTC-TCGC 200
|||||||| |||||| |||| ||||| || |||||||||||||||||||||||| || |
Sbjct 171 GACGAGATTGAGAATATGATGAACGATAGTTTCCAATCAGGTCCCGGAACCGTTCTTC-C 229
Query 201 CGCTCGTCCACCGAG-CCCAACCAGACCTTCGATTCCAGTAtcttcttcttcttcttctt 259
||||| |||||||| || | || | || || ||||| | | ||| || | || | |
Sbjct 230 AGCTCGACCACCGAGTCCGATCC-GTCCGTCAATTCCCG--T-TTCATC--C-TCACCGT 282
Query 260 ctCCGTTTATGCAATCGAATCTTCCACCGCT-TCATCCGTCG---TCATCAGCTCAGAAA 315
| || | | ||||| ||||| |||||||| || |||||| || || |||||||
Sbjct 283 -T-CG--T-T-CAATCCAATCTCCCACCGCTACCA-CCGTCGTCTTCTTCCTCTCAGAAG 335
Query 316 GTGACACATGTCCCCGTTCCTCCGCCTCTTCCGGCGGTAAGTAACT-C--CAG---CAAT 369
|||| | ||| || | |||||| || || ||| ||||| |||||| | ||| | ||
Sbjct 336 GTGATGCCTGTTCCAGCTCCTCCACCGCTCCCGTCGGTAGGTAACTCCAACAGCTCCGAT 395
Query 370 --T-TC-----CA-AGGAGCGAGTGCTTTTGGATCTCCGCCTAATACGTTGACGGAGCCT 420
| | || |||| ||||| || ||||||||||| ||||| ||||||||||||
Sbjct 396 GGTAACAAGAGCATTGGAGGGAGTGGATTCGGATCTCCGCCAAATACATTGACGGAGCCT 455
Query 421 GTGTGGGATACTGTGAAGCGAGATCTGTCTCGGATCGTGAGTAATTTGAAGCTTGTGGTG 480
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 456 GTATGGGATACTGTGAAGCGCGATCTGTCACGGATCGTGAGTAATTTGAAGCTTGTGGTG 515
Query 481 TTTCCTAATCCGTATAGGGAAGATCCTGGGAAGGCTCTTAGAGATTGGGATCTTTGGGGT 540
||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||||
Sbjct 516 TTTCCGAATCCGTATAGGGAAGATCCTGGGAAAGCACTTAGGGATTGGGATCTATGGGGA 575
Query 541 CCGTTTTTCTTCATTGTGTTCTTGGGTCTTACTCTTTCATGGTCAGCTTCCGTCAAGAAG 600
|||||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||
Sbjct 576 CCGTTTTTCTTCATTGTGTTCTTGGGGCTTACTCTTTCGTGGTCTGCTTCTGTTAAGAAG 635
Query 601 TCCGAGGTATTTGCAGTGGCATTTGCACTA-TTAGCAGCCGGGGCGGTGATCCTTACACT 659
|| || |||||||| ||||||||||||||| || ||||| ||||| || ||||| |||||
Sbjct 636 TCTGAAGTATTTGCCGTGGCATTTGCACTACTT-GCAGCTGGGGCAGTTATCCTCACACT 694
Query 660 AAACGTGCTTCTCCTGGGTGGACATATAATCTTCTTCCAAAGCTTGAGCCTTCTAGGTTA 719
||| ||||| || ||||| |||||||||||||| ||||||||| | ||||||||||||||
Sbjct 695 AAATGTGCTGCTTCTGGGAGGACATATAATCTTTTTCCAAAGCCTAAGCCTTCTAGGTTA 754
Query 720 CTGTTTATTTCCGCTAGACGTTGGAGCCGTGATCTGCATGTTGAAAGACAATGTGATACT 779
|||| ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 755 CTGTCTATTTCCACTGGACGTTGGAGCAGTGATCTGCATGTTGAAGGACAATGTGATACT 814
Query 780 GAAGATGGTGGTTGTGTCTGTAACCCTTGCCTGGAGCTCATGGGCTGCTTACCCTTTTAT 839
|| ||| | ||||||||||| || |||||||||||||| ||||||||||| ||||| ||
Sbjct 815 CAAAATGATCGTTGTGTCTGTGACTCTTGCCTGGAGCTCTTGGGCTGCTTATCCTTTCAT 874
Query 840 GAGCT-CAGCGGTTAACCCAAGAAGAAAAGCACTCGCTCTATACCCCGTCTTCCTCATGT 898
||| | | || || ||||| ||||||||||| || || || ||||| || ||||||||||
Sbjct 875 GAG-TGCTGCAGTGAACCCGAGAAGAAAAGCTCTAGCACTTTACCCGGTTTTCCTCATGT 933
Query 899 ATGTGTCAGTCGGTTTTCTC-ATCATAGCCATCAATTGA 936
|||| || || || || || ||||| ||||| |||||
Sbjct 934 ATGTCTCTGTTGGCTT-CTTGATCATTGCCATTGATTGA 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5