BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18850.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319874 jgi|Araly1|319874|fgenesh1_pm.C_scaffold_3002890 2591 0.0
> Ahg319874 jgi|Araly1|319874|fgenesh1_pm.C_scaffold_3002890
Length=1626
Score = 2591 bits (1403), Expect = 0.0
Identities = 1555/1629 (95%), Gaps = 7/1629 (0%)
Strand=Plus/Plus
Query 76 ATGTCAGAGACTGGTGATTTATGTGTAGAACTTCCCAAAGATGATCCCTTTTATCACCAC 135
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAGAGACTGGTGATTTATGTCTAGAACTTCCCAAAGATGATCCCTTTTATCACCAT 60
Query 136 AAAAAGAAGTTCTTGAGTTGCAAAGGTTTATGCGTAAAGGAAACATTGAACCTCAGTGGA 195
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 61 AAAAAGAAGTTCTTGAGTTGCAAAGGTGTAGGCGTAAAGGAAACATTGAACCTCAGTGGA 120
Query 196 TCATTATCTCAACAACTGTTGAATGCTGCATTGGAAAAGTTGCTTCATTTTGGACGAATA 255
|||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TCATTATCTCAACAGCTTTTGTATGCTGCATTGGAAAAGTTGCTTCAGTTTGGACGAATA 180
Query 256 GTTAATCTCGATAAGGTGGAAGTTTACTTTGGTGAGGATGCTTGCACTCCTGCAGGAATT 315
||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 181 GTTAACCTCGATAAGGTGGAAGTTTACTTTGGTGAGGATGCTTTTACTCCAGCAGGAATT 240
Query 316 TACAGTGTTAGAAACGAAATCTCAGCTCTCAGCTGGATCCTTTCGCTTATACCGGTTTCT 375
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TACAGTGTTAGAAACGAAATCTCAGCTCTCAGCTGGATCCTTTCGCTCATACCGGTTTCT 300
Query 376 TGT-AAGATGCAAACACAAGTTGATACCTTTGAAGCTCTACGAGCTGCTTTAAAAGGTAG 434
||| || |||||||||||||| |||||||| |||||||||||||||||| ||||| ||||
Sbjct 301 TGTGAA-ATGCAAACACAAGTCGATACCTTGGAAGCTCTACGAGCTGCTGTAAAAAGTAG 359
Query 435 AATCAATGAGGTTGTTGGAGCTGAAAAGGAGAAAGCTAGAGTTGTTGATAGCTATAGATG 494
||||| ||||||||||||||| |||| ||||| |||||||||| ||||||||||||||||
Sbjct 360 AATCAGTGAGGTTGTTGGAGCGGAAACGGAGAGAGCTAGAGTTTTTGATAGCTATAGATG 419
Query 495 CGAAAAGGAAAGCAAATTAGTAGAATGGGGTCAGGACAATGGAGTCAAAACCAAATTGCA 554
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGAAAAGGAAAGCAGATTAGTAGAATGGGGTCAGGACAATGGAGTCAAAACCAAATTGCA 479
Query 555 GATAGCTCAAATTGATGGCTATGGACGAGGAGCTATAGCTAGCGAAGACTTGAAATTTGG 614
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 GATAACTCAAATTGATGGCTATGGACGAGGAGCTGTAGCTAGCGAAGACTTGAAATTTGG 539
Query 615 CGATGTTGCTTTAGAGATTCCAGTCTCAAGTATCATTTCGGAGGAGTATGTGTACAACTC 674
|||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 540 CGATGTTGCTCTAGAGATTCCAATCTCAAGTATCATTTCTGAGGAGTATGTGTACAACTC 599
Query 675 CGACATGTACCCAATATTGGAGACGTTTGATGGCATTACATCTGAGACAATGCTGCTCTT 734
||||||||||||||||||||||| | ||||||| |||||||||||||||||| |||| ||
Sbjct 600 CGACATGTACCCAATATTGGAGAAGATTGATGGGATTACATCTGAGACAATGGTGCTATT 659
Query 735 ATGGACCATGAGGGAAAAGCATAACCTGGACTCGAAATTCAAACCATACTTTGACTCTCT 794
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 ATGGACCATGAGGGAGAAGCATAACCCGGACTCGAAATTCAAACCATACTTTGACTCTCT 719
Query 795 GCAAGAGAATTTTTGTACCGGTTTGAGTTTTGGGGTTGATGCAATCATGGAGCTTGATGG 854
||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 720 GCAGGAGAATTTTTGTACTGGTTTGAGTTTCGGGGTTAATGCAATCATGGAGCTTGATGG 779
Query 855 TACATTGCTTTTAGATGAAATAATGCAAGCTAAAGAGCTTTTGCGTGAGAGGTATGATGA 914
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 TACATTGCTTTTAGATGAAATAATGCAAGCTAAAGAACTTTTGCGTGAGAGGTATGATGA 839
Query 915 ATTGATTCCTCTTTTATCGAACCACCGGGAAGTATTTCCACCGGAGCTCTATACATGGGA 974
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 840 ATTGATTCCTCTTTTATCGAACCACCGGCATGTATTTCCACCGGAGCTCTATACATGGGA 899
Query 975 ACATTACTTATGGGCTTGTGAGTTGTATTACTCAAATAGCATGCAAATCAAATTCCCAGA 1034
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 ACATTACTTATGGGCTTGCGAGTTGTATTACTCAAATAGCATGCAAATCAAATTCCCTGA 959
Query 1035 TGGAAAGCTGAAGACTTGCTTGATTCCTGTCGCCGGTTTTCTCAACCATTCTATATACCC 1094
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 TGGAAAGCTGAAGACTTGCTTGATTCCTGTCGCCGGTTTTCTCAACCATTCGATATACCC 1019
Query 1095 ACACATAGTGAAATATGGAAAAGTA-GACATTGAGACGAGTTCCTTGAAGTTCCCAGTCT 1153
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 1020 ACACATAGTGAAATATGGAAAAGTATG-CGTTGAGACGAGTTCCTTGAAGTTCCCAGTCT 1078
Query 1154 CAAGGCCTTGCAACAAAGGGGAACAATGTTTTCTTAGCTACGGAAACTACTCTAGTTCGC 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAAGGCCTTGCAACAAAGGGGAACAATGTTTTCTTAGCTACGGAAACTACTCTAGTTCGC 1138
Query 1214 ATCTGTTAACATTTTACGGATTTCTACCAAAAGGGGATAACCCGTATGATGTCATTCCCT 1273
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1139 ATCTGTTAACATTTTACGGATTTCTACCAAAAGGCGATAATCCGTATGATGTCATTCCCT 1198
Query 1274 TAGATTTTGATGTCATTGATGATGAAGACA-TCGAGACCGAGTTTTCTTGGACAACTCAC 1332
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 1199 TAGATTTTGATGTCATTGATGATGAAGACACT-GAGACTGAGTTTTCTTGGACAACTCAC 1257
Query 1333 ATGTTACGCGGGACTTGGCTATCGAGTAATCACAACATCTTCCACTACGGCTTGCCTACT 1392
||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1258 ATGGTACACGGGACTTGGCTATCGAGCAATCACAACATCTTCCACTACGGCTTTCCTACT 1317
Query 1393 CCATTGTTGAACTACTTGCGCAAAGCTCATGGTCTTGTTCATCATTCTGAAACAGATTTA 1452
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1318 CCATTGTTGAACTACTTGCGCAAAGCTCATGGACTTGATCATCATTCTGAAACAGATTTA 1377
Query 1453 TGGAAGAACTTGGAAGTTGAGATAGGAGTACTTGAGAATCTCCAATCCACATTCGACGAC 1512
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||
Sbjct 1378 TGGAAGAACTTGGAAGTTGAGATGGGAGTACTCGAGAATCTCCAATCCACATTCGACAAC 1437
Query 1513 ATGATGCAAAATCTTGGCGATGCAGATTCTATCGACAGAGAAAACGCGGATTGGGATGTT 1572
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1438 ATGATGCAAAATCTTGGCGATGCGGATTCTATCGACAGAGAAAACGCGGATTGGGATGTT 1497
Query 1573 AAACTAGCGATGGAGTTCAAAGAGCGGCAGAGAAAGATTGTCTCATCCATTCTTGATTCA 1632
||| ||||||||||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 1498 AAAATAGCGATGGAGTTCAAAGAGCAGCAGAGAAAGATTGTGTCTTCCATTCTTGATTCA 1557
Query 1633 TGTTCTGCAGGTATCAAACTAGTTCAAGAATCCATAACTAACCCACCGGTTT-AGCTAAG 1691
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1558 TGTTCTGCAGGTATCAAACTAGTTCAAGAATTCATAACTAACCCACCGGTTTTAGCCAAG 1617
Query 1692 GTAGAATGA 1700
||||||||
Sbjct 1618 CTAGAATGA 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5