BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18860.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906822 jgi|Araly1|906822|Al_scaffold_0003_3950 1101 0.0
Ahg491727 jgi|Araly1|491727|fgenesh2_kg.7__1160__AT4G30240.1 291 1e-77
> Ahg906822 jgi|Araly1|906822|Al_scaffold_0003_3950
Length=918
Score = 1101 bits (596), Expect = 0.0
Identities = 812/908 (89%), Gaps = 47/908 (5%)
Strand=Plus/Plus
Query 118 ATGATGGTAGTGAACAGCTTTGATCTATGGCAAAAAGATGTTTTCTTCTCTGCAGCTGAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGGTAGTGAACAGCTTTGATCTATGGCAAAAAGATGTTTTCTTCTCTGCAGCTGAA 60
Query 178 GAGGTTCAAAAATCTACAGATATAATGGAGTCTGCTTATAGATTGTGGATTAGAGAGAAG 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGGTTCAAAAATCTGCAGATATAATGGAGTCTGCTTATAGATTGTGGATTAGAGAGAAG 120
Query 238 AAAGATGAGATTTGTAAGGAACTTCAAGCAGCTTTAGGTACAGCTAAATGGCAGTTGGAG 297
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGATGAGATCTGTAAAGAACTTCAAGCAGCTTTAGGTACAGCTAAATGGCAGTTGGAG 180
Query 298 GAGTTTGAGAAGGCAGTGAGATTGAGTCATAAACGGTGTGGGGATAATGATTCTTCATCC 357
||||||| |||||| || ||||||||||||||||| ||||||| | |||||||||||||
Sbjct 181 GAGTTTGTGAAGGCTGTAAGATTGAGTCATAAACGTTGTGGGGGTGATGATTCTTCATCG 240
Query 358 ACACGGCATAAACAGTTTGTTACCGCTATTGAAAACCAGATTCATCGCGTAGAAACTTCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACACGGCATAAACAGTTTGTTACCGCTATTGAAAACCAGATTCATCGCGTAGAAACTTCT 300
Query 418 CTGCAAGAAGCTTATAGTGAAAATGGGAAAA-AGCCTCTCCGTTGGGTTGATCTTAATGA 476
|||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 301 CTGCAAGAGGCTTATAGTGAGAATGG-AAAAGAGCCTCTCCGTTGGGTTGATCTTAATGA 359
Query 477 AGAAGAGCGTGATGACTTAGCAATGTTTCTCTCTGGATCTTCTCGAACTTCACAGAGTTT 536
|||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||
Sbjct 360 AGAAGAGCGTGATGACTTGGCCATGTTTCTCTCTGGATCTTCTCCAACTTCAGAGAGTTT 419
Query 537 TAGTGGTGAGAGCAGCATCAAGTCGAGAGAGTCTACTAATAGTTCTCTAGTTGAAAA-CG 595
|||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |
Sbjct 420 TAGTGGTGAGAGCAGCATTGAGTCGAGAGATTCTACTAATAGTTCCCTAGTTGAAAATC- 478
Query 596 TT--ATGGAAGTTTCAGC-T--AA--A----GTAA--------CATTCAAGAAAGCT-AA 635
|| | ||||| ||| | || | |||| |||||||||||| | ||
Sbjct 479 TTCCAGGGAAGAA-CAGAATGGAAGTAAACTGTAAAAAAGAGACATTCAAGAAAG-TGAA 536
Query 636 AGTTTATGGTGATGGCTCTGAGTGTGTCATAGACATTGAAGAAAGAGTGACACCTGG--- 692
|| || ||| |||||||||| ||||| ||||| ||| |||||||||| ||||| ||
Sbjct 537 AGGTTGCGGTAATGGCTCTGAATGTGTTATAGATATTAAAGAAAGAGTAACACCGGGAAA 596
Query 693 --C-----C-A--A---GC-A-G-AGA-AA-TCAGTTGGGCTGAGAAGAATATGGAGTTC 734
| | | | || | | ||| || |||| |||| |||||||||||||||||||
Sbjct 597 TGCAGATGCGAGGATTCGCCAAGTAGAGAAATCAGCTGGGATGAGAAGAATATGGAGTTC 656
Query 735 ACCAAATTTCAATTCTTTGAGAATTATAGTTCCTGGTGGTGATAATGAAGAAGAAAAGGA 794
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 657 ACCAAATTTCAATTCTTTGAGGATTATAGTTCCTGGTGGTGATAATCAAGAAGAAAAGGA 716
Query 795 GACATTGGTGGCACAAATAGAAGCGACGCCTAAAGTTAAAGGAACTAAGTCTGTATTGTG 854
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 GACATTGGTGGCACAAATCGAAGCGACGCCTAAAGTGAAAGGAACTAAGTCTGTATTGTG 776
Query 855 GATGCAGAGACTTCCTGATCATAATCAGCTCTTTGACAAGACCGGTTGCTTTCAAAATCC 914
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 GATGCAGAGACTTCCTGATCATAATCAGCTCTTTGACAAGACCGGTTGCTTCCAAAATCC 836
Query 915 GATACGCTTACCGTTTAATCACCCGATCAAGTTTATTGTTTCCTTATTGCTAATGGTGTT 974
|| ||||||||| |||||||||||||||||| | | ||||||| || |||||||||||||
Sbjct 837 GACACGCTTACCATTTAATCACCCGATCAAGCTCACTGTTTCCGTAATGCTAATGGTGTT 896
Query 975 TCTACTAT 982
||| ||||
Sbjct 897 TCTTCTAT 904
> Ahg491727 jgi|Araly1|491727|fgenesh2_kg.7__1160__AT4G30240.1
Length=1449
Score = 291 bits (157), Expect = 1e-77
Identities = 364/456 (80%), Gaps = 45/456 (10%)
Strand=Plus/Plus
Query 114 GAAGATGATGGTAG-TGAACAGCTTTGATCTATGGCAAAAAGATGTTTTCTTCTCTGCAG 172
|||||||||||||| | || ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 209 GAAGATGATGGTAGCT-AATAGCTTCGATCTATGGCAAAAAGATGTTTTTTTCTCTGCAG 267
Query 173 CTGAAGAGGTTCAAAAATCTACAGATATAATGGAGTCTGCTTATAGATTGTGGATT---- 228
|||| ||||||||| ||||| | ||||||||||| ||||| ||||| |||||| ||
Sbjct 268 CTGAGGAGGTTCAAGAATCTGCTGATATAATGGAATCTGCGTATAGGTTGTGGTTTAAAC 327
Query 229 AG-AGAGA-A-----GA--AA-----G-AT--GA-GA--TTTGTAAGGAACTTCAAGCAG 268
|| ||||| | || || | || || || | || || ||||| ||||| |
Sbjct 328 AGAAGAGAGACGGTCGAGTAACCGTCGAATCAGACGAGCTCTGCAAAGAACTCCAAGCTG 387
Query 269 CTTTAG-GTACAGCTAAATGGCAGTTGGAGGAGTTTGAGAAGGCAGTGAGATTGAGTCAT 327
|||| | | || ||||||||||||||||| |||||||||| ||||||||| ||||| |||
Sbjct 388 CTTT-GAGCACTGCTAAATGGCAGTTGGAAGAGTTTGAGAGGGCAGTGAGGTTGAGCCAT 446
Query 328 --AAACGGTGTGGGGATAATGATTCTTCATCCAC-ACGGCATAAACAGTTTGTTACCGCT 384
||| | || || |||| || | | || | |||||||||||||||||||||||
Sbjct 447 GGAAA---T-TGTCGA-GATGACACTACCTTAACTA-GGCATAAACAGTTTGTTACCGCT 500
Query 385 ATTGAAAACCAGATTCATCGCGTAGAAACTTCTCTGCAAGAAGC-TTATAGTGAAAATGG 443
||||||||||||||| |||| ||||| ||||||||||||| || ||| || || |||||
Sbjct 501 ATTGAAAACCAGATTTATCGAGTAGAGTCTTCTCTGCAAGAGGCGTTA-AGCGAGAATGG 559
Query 444 GAAA-AAGCCTCTCCGTTGGGTTGATCTTAATGAAGAAGAGCGTGATGAC-TTAGCAATG 501
|||| || ||| | |||||||| |||||||| ||||||||||||||||| || || |||
Sbjct 560 GAAACAA-CCTTTGCGTTGGGTGGATCTTAACAAAGAAGAGCGTGATGACCTT-GCCATG 617
Query 502 TTTCTCTCTGGATCTTCTC-GAACTTCACAGAGTTT 536
||||| ||||||||||||| || | ||| |||||||
Sbjct 618 TTTCTATCTGGATCTTCTCAGA-CATCAGAGAGTTT 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5