BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18870.1
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906820 jgi|Araly1|906820|Al_scaffold_0003_3948 728 0.0
> Ahg906820 jgi|Araly1|906820|Al_scaffold_0003_3948
Length=600
Score = 728 bits (394), Expect = 0.0
Identities = 539/606 (89%), Gaps = 22/606 (4%)
Strand=Plus/Plus
Query 97 GCTGCAAGTAACTCTAATTTGAGTGATGATAAAAAGAAACGAAGGAAAAACCCTAAGCCT 156
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GCTGCAAGTAACTCAAATTTGAGTGATGATAAAAAGAAAGGAAGGAAAAACCCTAAGCCT 60
Query 157 CGGCACTTAAGTTCGTATGGGAAGCGTAATAACA-CT--CCAGTTCAACCCTCAGAAACT 213
|| || |||||||| |||||||||| |||||| | || ||||||||||| || |||
Sbjct 61 CGTCATTTAAGTTCCTATGGGAAGCCTAATAATACCTCACCAGTTCAACCTTC---AACA 117
Query 214 GAAACCAAGAGCCAAGGCAAAAGAGTTTGCTTCAACAA-C--T-CTGATGTAAGACAGAT 269
|||||||||||| |||||||||||||||||||||| || | | |||| |||||||||||
Sbjct 118 GAAACCAAGAGCGAAGGCAAAAGAGTTTGCTTCAA-AACCGATGCTGACGTAAGACAGAT 176
Query 270 GAAGCAAAACA---CTTCTTCTAGAGAAAATCAGTTTG-GCATAAAAGAAACTGTCTTGG 325
||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 177 GAAGCAAAACACTTCTTCTTCTAGAGAAAATCAG-TTGATCATAAAAGAAACTGTCATGG 235
Query 326 AGAATTTCCCCAAC-GTCACTCCTCAGTTTATGTCAGACCAAATCAATGGCCATCAAGAT 384
||||||| ||| || ||||| |||| |||| ||||||||||||||||| || ||||| |
Sbjct 236 AGAATTTGCCC-ACTGTCACAACTCAATTTAGGTCAGACCAAATCAATGACCGTCAAGTT 294
Query 385 AAACCTGAGAAGGCGAAGAAGAATCCGGAAAGCTATGGTTTAGGGCTTGAGCAATGTGTG 444
|||||||||||| ||||||||||| ||||||| ||| |||||||| ||||||||||||||
Sbjct 295 AAACCTGAGAAGTCGAAGAAGAATGCGGAAAGTTATTGTTTAGGGTTTGAGCAATGTGTG 354
Query 445 AAGATCATAAGAAAGCTTGAGTGTTCAGGTTATGTTGAGAGCACTTTTAGACAAAAGTTT 504
|||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 355 AAGATCATAAGACAGCTTGAGTGTTCAGGTAATGTTGAGAGCAGTTTTAGACAAAAGTTT 414
Query 505 TTGACTTGGTTTAGCCTACGAGCTACGAG-TCAGGAGAGAAATACTGTCACGACATTCAT 563
|||||||||||||||||| |||| || || |||||||| |||||||||| |||||||||
Sbjct 415 TTGACTTGGTTTAGCCTAAGAGCGAC-AGCTCAGGAGATCAATACTGTCAAGACATTCAT 473
Query 564 GA-ATGCTTTCAATGATGATTCAATGGCTCTGGCTGAGCAGCTCGTTGACACATTCTCTG 622
| |||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 474 -ACATGCTTTCAAGGATGATTCAACGGCTCTGGCTGAACAGCTCGTTGACACATTCTCTG 532
Query 623 ATTGTATATGGAGCAAGGGTTCTGTGATTGGCGATCGCGATGGAGGTGGCAGTAGTGGTG 682
|||| |||||||| |||||| ||| |||||||||| |||||||||||||||||| |||
Sbjct 533 ATTGCATATGGAGAAAGGGTCCTGCGATTGGCGATGGCGATGGAGGTGGCAGTAACGGTA 592
Query 683 TCTCAT 688
||||||
Sbjct 593 TCTCAT 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5