BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18876.1
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480844 jgi|Araly1|480844|fgenesh2_kg.3__3545__AT2G18876.1 2169 0.0
> Ahg480844 jgi|Araly1|480844|fgenesh2_kg.3__3545__AT2G18876.1
Length=1457
Score = 2169 bits (1174), Expect = 0.0
Identities = 1373/1465 (94%), Gaps = 29/1465 (2%)
Strand=Plus/Plus
Query 25 ttttggattttggtgaaaaagtttaatttgtctctttctctATTTATCTCCGGCGTCAAT 84
||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||| ||
Sbjct 1 TTTTGGATTTTCGTGAAAAAGCTGAATTTGTCTCTTTCTCTATTTCTCTCCGGCGTCGAT 60
Query 85 TTCACGGCGGCTACACGACGGTTATCGATGTCATTGACTGTACCGGAGTTCGATTTCAGA 144
|||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 61 TTCACGGCGGCTACGCGACGGTCATCGATGTCATTGACTGTACCGGAATTCGATTTCAGA 120
Query 145 TTGACGCCACAGTTTGGTTTC-T--CACAG--TCACCG-A-----TC--GGGGAGCGTAA 191
| ||| | | | | |||| | ||| | ||| || | || |||||| |||
Sbjct 121 GT-ACGTCTC--TCTCATTTCTTAACACCGCTTCA-CGAATTCTCTCTAAGGGAGCATAA 176
Query 192 TTTCGCGGATGTTGATAATCTGGAGAACTGTATTAAGTATTTGAATCAGAGCTTAGTCAC 251
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 177 TTTCGCAGATGTTGATAATCTGGAGAACTGTATAAAGTACTTGAATCAGAGCTTAGTCAC 236
Query 252 CTCTGGATTCTCTGCTTCGCTTGACCTCTTCGCTACCGATCCTGTTTCGATTGCTAGAAC 311
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTATGGATTCTCTGCTTCGCTCGACCTCTTCGCTACCGATCCTGTTTCGATTGCTAGAAC 296
Query 312 TTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATC 371
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 TTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTCAGAGAATC 356
Query 372 TGCTAATGATCAGAGACAACGACTTTTATCCGATATGGCGAGACTCGAAGCAAAAGTTGA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGCTAATGATCAGAGACAACGACTTTTATCCGATATGGCGAGACTCGAAGCAAAAGTTGA 416
Query 432 AAGGCTTGAGACTCAATTGCAAGCTAAAGAAAGGGAACTTGGTTCGGTGACAAGAACGGA 491
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 AAGGCTTGAGACTCAATTGCAAGCTAAGGAAAGGGAACTTGGTTCGGTGACAAGAACGGA 476
Query 492 AGCAAAAAATACAGCGGCTTTAAAGACGCAGAATGAGAAGCTTCAAAAAGAGAGAGATGA 551
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 477 AGCAAAAAATACAGCGGCTTTAAAGACGCAGAATGAGAAGCTACAGAAAGAGAGAGATGA 536
Query 552 GTTTCAACGAATGGTGATTGCTAACCAGCAAGTCAAGACCCAACAATTACATGAAACaaa 611
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTTTCAACGAATGGTGATTGCCAACCAGCAAGTCAAGACCCAACAATTACATGAAACAAA 596
Query 612 -aaagaaagaaaaaGAGTACATAAAGTTACAGGAGAGGTTAAACCAAGTGTTGATGGAGA 670
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GAAA-AAAGAAAAGGAGTACATAAAGTTACAGGAGAGGTTAAACCAAGTGTTGATGGAGA 655
Query 671 AAAAGAAGGAAACGAGATCAGGCATGGAGATTATGAATCTACTCCAGAAAGAAGGGAGAC 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AAAAGAAGGAAACGAGATCAGGCATGGAGATTATGAATCTACTCCAGAAAGAAGGGAGAC 715
Query 731 AGCGTGGAACATGGAGTGGGAAGAAAACTGACTCTGATTTCTACaaaaaaaTTGTGGATG 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGCGTGGAACATGGAGTGGGAAGAAAACTGACTCTGATTTCTACAAAAAAATTGTGGATG 775
Query 791 CATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTAC 850
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 776 CATATGAGGCAAAAAATCAAGAGCTGATGGCAGAGAACACTGATCTGAGAGCGTTACTGC 835
Query 851 GATCAACGCAGGGTGACATGCGTTCTTTCTTGAATGCTTCTGGTGGATTAACCAACCAAT 910
|||| || ||||| |||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 836 GATCCACACAGGGAGACATGCGTTCTTTCTTGAATGCTTCCGGTGGATTACCCAATCAAT 895
Query 911 CTTTGGTAGCTAATGGAAGACACGGTGCAGACCCTTCTCAGTCTCCTTTGGGCGGGAAGA 970
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 896 CTTTGGTAGCTAATGGAAGACACGACGCAGACCCTTCTCAGTCTCCTTTGGGCGGGAAGA 955
Query 971 CGGACGTTTTTGACCTACCTTTTCGTATGGCACGAGGTCAAATAGAAGATAGTTTACGCT 1030
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 956 CGGATGTTTTCGACCTACCTTTTCGTATGGCTCGAGGTCAAATAGAAGATAGTTTACGCT 1015
Query 1031 CTAAGATGGTTTCCATCAAGGAACGTATGGGTCAGTTAGTAGATGCACAAAAAGAAGTAT 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTAAGATGGTTTCCATCAAGGAACGTATGGGTCAGTTAGTAGATGCACAAAAAGAAGTAT 1075
Query 1091 CCATTACTTCAGAAGCGTCAGAGAGGGAACTTGAACTTGAAGCACAACTCGTCGAGGCAC 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CCATTACTTCAGAAGCGTCAGAGAGGGAACTTGAACTTGAAGCACAACTCGTCGAGGCAC 1135
Query 1151 GCAGCATTATTCAAGAACAGGAATCTATAATGTCCAAACATTTACCTAAGACAGATCGGA 1210
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1136 GCAGCATAATTCAAGAACAGGAATCTATAATGTCCAAACATTTACCTAAGACAGATAGGA 1195
Query 1211 GAAGGAACTCAGCTCCTCCACATTCTTCTGTCAACGGACTGCGTGGCTGACTAATTAGAT 1270
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1196 GAAGGAACTCAGCTCCCCCACATTCT---GTCAACGGACTGCGTGGCTGACTAATTAGAT 1252
Query 1271 TGTGAATCTCAGGTTCAAAATATCAAATCTCTTCCTGTAATTT-GATCTTGCT-AAACAA 1328
||||||| |||||||| ||| |||||||| ||||||||||||| | ||||| | ||||||
Sbjct 1253 TGTGAATTTCAGGTTCCAAAGATCAAATCACTTCCTGTAATTTTGCTCTTGTTTAAACAA 1312
Query 1329 AGAAATGTTTTATGAACTTATaaaaaaaT-TTAAATGAATGTGGATTCGTATTTGTAACG 1387
|||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1313 AGAAATATTTTATGAATTTATAAAAAAAAATTAAATGAATGTGGATTCGTATTTGGAACG 1372
Query 1388 TTGTACAGAACACTTGCAGACAGCAAGCTGCAAGCTGTAGAGT--A-TTATAGATGGA-G 1443
|||||||||||||||||||||| |||| | || |||||||| | | ||||||||| | |
Sbjct 1373 TTGTACAGAACACTTGCAGACAACAAGTTTCAGGCTGTAGATTTTAATTATAGATGAATG 1432
Query 1444 AGATATGTTTTATATCATAATATAG 1468
| ||||||||||| |||||||||||
Sbjct 1433 AAATATGTTTTATTTCATAATATAG 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55992660150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5