BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18880.1
Length=2108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931870 jgi|Araly1|931870|scaffold_304327.1 1574 0.0
Ahg480844 jgi|Araly1|480844|fgenesh2_kg.3__3545__AT2G18876.1 176 6e-43
> Ahg931870 jgi|Araly1|931870|scaffold_304327.1
Length=1738
Score = 1574 bits (852), Expect = 0.0
Identities = 1146/1285 (89%), Gaps = 32/1285 (2%)
Strand=Plus/Plus
Query 292 GCTCTCTACTACTTTCTTTCATGGCTTCTTTTCATAAAGGAGCTGCAGGTGACTCAATGG 351
||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1 GCTCTCTACTAGTCTCTTTCATGGCGTCTTCTCATAAAGGAGCTGCAGGTGACTCAATGG 60
Query 352 GAAGCAGTAAAATGAGTTTTGATC-AAAGAAGACAACTTGTCTTGAAGCTGTCGAAAGAA 410
|||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||
Sbjct 61 GAAGCAGTAAAATGAGTTTTGATCAAAAG-AGACAGCTTGTCTGGAAGCTGTCGAAAGAA 119
Query 411 TCCGAGAGAGAATTTAAAGAAGTCTTGAAGGACTGGAGCTGCAACGAGATTCGAGAGCTC 470
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCCGAGAGAGCCTTCAAAGAAGTCTTGAAGGACTGGAGCTGCAACGAGATTCGAGAGCTC 179
Query 471 TTACGTGCAGAATCAAAGAAAGATATAAAGTACACCGGTTTGACGAAAGATGAGATCATC 530
||||||||||||||| |||| ||||||| ||||||||||| |||||||| |||||||||
Sbjct 180 TTACGTGCAGAATCAGGGAAATATATAAAATACACCGGTTTAACGAAAGAAGAGATCATC 239
Query 531 ACAAGGCTTTTCAACATTGTATCAAAGAAAAACACTAGAGATCATGAGGT---AGAAGAG 587
| |||||||||||||||||||||||||||||||||| ||| | ||||||| |||||||
Sbjct 240 ATAAGGCTTTTCAACATTGTATCAAAGAAAAACACTGGAGGTTATGAGGTAGAAGAAGAG 299
Query 588 ATAATTCCATCACCAAAAAGACAGA--AAAGA----GA-----T---CT-TGTGACTCCA 632
| || |||||||||||||||||||| ||||| || | || |||||||||
Sbjct 300 AGAAATCCATCACCAAAAAGACAGAGGAAAGATCTTGATCCTTTGCACTATGTGACTCCG 359
Query 633 TTAGCTAAAGCTAAAGGCAAGGGTAAAATGTATTGTCAGAACTTGGCTTGCCAGAATAAA 692
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 360 TTAGCTAAAGCTAAAGGCAAGGGTACAATGTATTGTCAGAACTTGGCTTGCCAGGCTAAA 419
Query 693 CTAAGAGAGGAAGCCACTTTTTGCAAAAGGTGCT-CTTGTTGTATCTGCTTTAAGTATGA 751
|||||||||||||||||||||||| ||||||| | | ||||||||||||| |||||||||
Sbjct 420 CTAAGAGAGGAAGCCACTTTTTGCCAAAGGTG-TACCTGTTGTATCTGCTATAAGTATGA 478
Query 752 TGACAATAAAGATCCTAGTCTCTGGTTAACCTGCAATTCAGATTCTCAATTCGACGGTGA 811
| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 479 TAACAATAAAGATCCTAGTCTCTGGTTAACCTGCAATTCAGATCCTCCATTGGACGGTGA 538
Query 812 ATCTTGTGGATTATCTTGCCATTTAAACTGCGCTTTCGACAGTGAGAAATCGGGTCTGAA 871
||||||||| ||||||||||| | ||||||||| ||| |||||| |||||||||||
Sbjct 539 ATCTTGTGGCTTATCTTGCCACCTGGTTTGCGCTTTCAACAATGAGAATTCGGGTCTGAA 598
Query 872 AGAGGATACGCCGAGTAGTGATATTGATGGATGCTTCAACTGTGTTTCCTGTGGGAA-AA 930
||||||||||||||||||| |||||||||||||||||| |||||||| |||||| || |
Sbjct 599 AGAGGATACGCCGAGTAGTAATATTGATGGATGCTTCAGCTGTGTTTTCTGTGGCAAGGA 658
Query 931 CAAATAGCAAAATAGAATGTTTGAAGAAGCAACTGATCATTGCAAATGAAGAAAGAAGAG 990
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 -AAACAGCAAGATAGAATGTTTGAAGAAGCAACTGATCATTGCAAATGAAGAAAGAAGAG 717
Query 991 TAGGCGTGTTTTGTTACCGCATTCTCTTGGCTCATAAGCTTCTCAAGGGCACAAAGAAGT 1050
|||| |||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 718 TAGGTGTGTTTTGTTTCCGCATTCTCATGGCTCATAAGCTTCTCAAGGGAACAAACAAGT 777
Query 1051 ACATAATAGTATCTGAAGAGGTGGAGAAAGCTGTGATGCATCT-GAAAAATGAATTTGGT 1109
||| | |||||||| ||||||||||| ||||||||| |||||| |||| |||||| |||
Sbjct 778 ACACACTAGTATCTAAAGAGGTGGAGGAAGCTGTGAAGCATCTAGAAAC-TGAATTCGGT 836
Query 1110 GTTCCCATTTCTTGTCTTCCATCGAAGATGAGTAGAGGGCTCGTTAACAGACTTTGCTGC 1169
||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 837 GTTCCTATTACTGGTCTTCCATCGGAGTTGAGTAGAGGGCTCGTTAACAGACTTTGCTGC 896
Query 1170 GCTGAGAAA-GTCAAGAAACATTGCTCTTCTGCTTTGAAAGAGCTTGATGGTCTTCCACT 1228
|| || ||| |||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 897 GC-GAAAAAAGTCAAGGGACATTGCTCTTCTGCTCTGAAAGAGCTTGATAGTCTTCCACT 955
Query 1229 GCCTTCTACTATCCAAGGATCAATGAAGATCAGAATTGAGTCTGTACTTGCAACTTCTGT 1288
|||||||||||| ||||||||| ||||||||| |||||||||||| || |||||||||||
Sbjct 956 GCCTTCTACTATTCAAGGATCATTGAAGATCAAAATTGAGTCTGTTCTAGCAACTTCTGT 1015
Query 1289 GACTTTCGAT-ATTGAAGCCGAAGAATCTTTCTCATGGGGAGATACCAATCATTACCGCA 1347
|||||| || || || | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1016 AACTTTC-ATTATGGATGTCGAAGAATCTTTCTCATGGGGAGATACCAATCATTACCGGA 1074
Query 1348 TGGTGTATCGTAAGGTCTCAGAGAAACATTCCTCAAAGGATTTGACTCGTGAGTTGTTCA 1407
|| | |||| |||| | |||||| | ||| ||| || |||||||||||||||||||||
Sbjct 1075 TGTTCCATCGAAAGGCCACAGAGAGATATTACTCGGAGCATTTGACTCGTGAGTTGTTCA 1134
Query 1408 GTACATCAAGTCACCAAAGGTTTACA-GTCATGGAACTTACTCCAGCTACAGAGTATTGG 1466
|| | ||||| ||| |||||||| | ||| ||||||| ||||||||||||||||||||
Sbjct 1135 GTGTAACAAGTTACCCAAGGTTTA-ATGTCTTGGAACTAACTCCAGCTACAGAGTATTGC 1193
Query 1467 TTCAAAATAGTTTCCTTTAGCGGCGTCGAAGAATTGAGCGTAGATGAATTCATAGTCTCT 1526
||||| || |||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1194 TTCAAGATTGTTTCCTTTAGCGGCGTCGAAGAAGTGAGCGTAGATGAATTCAGAGTCTCT 1253
Query 1527 ACAAAAACCCTCCAAGACGAAGAAG 1551
||| ||||||||||||| |||||||
Sbjct 1254 ACACAAACCCTCCAAGAAGAAGAAG 1278
> Ahg480844 jgi|Araly1|480844|fgenesh2_kg.3__3545__AT2G18876.1
Length=1457
Score = 176 bits (95), Expect = 6e-43
Identities = 109/115 (95%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 7 CAGGAATCTATAATGTCCAAACATTTACCTAAGACAGATCGGAGAAGGAACTCAGCTCCT 66
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1153 CAGGAATCTATAATGTCCAAACATTTACCTAAGACAGATAGGAGAAGGAACTCAGCTCCC 1212
Query 67 CCACATTCTTCTGTCAACGGACTGCGTGGCTGACTAATTAGATTGTGAATCTCAG 121
||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1213 CCACA---TTCTGTCAACGGACTGCGTGGCTGACTAATTAGATTGTGAATTTCAG 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79303890090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5