BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18890.1 Length=1427 Score E Sequences producing significant alignments: (Bits) Value Ahg931869 jgi|Araly1|931869|scaffold_304326.1 2049 0.0 > Ahg931869 jgi|Araly1|931869|scaffold_304326.1 Length=1228 Score = 2049 bits (1109), Expect = 0.0 Identities = 1189/1228 (97%), Gaps = 3/1228 (0%) Strand=Plus/Plus Query 111 CTTCTTCTTCTGTTCCATTCCAAAAGAATGAAGTACATTCGAAGCAACAGCTTGAAACGT 170 ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| Sbjct 3 CTTCTTCTTCTGTTCCATT-CAAAAAAATGAAGTACATTCGTAGCAACAGCTTGAAACGT 61 Query 171 CTCTTCTCCTTCAAACGACGCAGTTTCGACTCCGACTCCTCAGAAAACTCTTCTCCTCTC 230 ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | Sbjct 62 CTCTTCTCCTTTAAACGACGCAGTTTCGACTCCGACTCTTCAGAAAACTCAACTCCTCAC 121 Query 231 GCTGCTTCTTCCACCAAATGCGTCGAGGGTTTTCAAGAAACAGACCAGTTTCAAAGACCC 290 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 122 ACTGCTTCTTCCACCAAATGCGTCGAGGGTTTTCAAGAAACAGAGCAGTTTCAAAGACCC 181 Query 291 AAATGGAAATGTTTCTCCTTTCAAGAAATCTA-TGACGCAACCAACGGTTTTAGCTCAGA 349 ||||||||||||||||||||| |||||||||| | |||||||||||||||| |||||||| Sbjct 182 AAATGGAAATGTTTCTCCTTTGAAGAAATCTACT-ACGCAACCAACGGTTTCAGCTCAGA 240 Query 350 GAATTTGGTAGGTAGAGGTGGATTTGCAGAGGTGTATAAAGGGATATTGGGTAAAAACGG 409 |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || Sbjct 241 GAATTTGGTAGGTAGAGGTGGATTTGCAGAGGTGTATAAAGGAATATTGAGTAAAAATGG 300 Query 410 tgaagagatagcagtgaagaggataacaagaggaggaagagatgatgagaggagagagaa 469 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGAAGAAATAGCAGTGAAGAGGATAACAAGAGGAGGAAGAGATGATGAGAGGAGAGAGAA 360 Query 470 agagTTTTTAATGGAGATTGGAACAATAGGACATGTCTCACATCCTAATGTCTTGTCTCT 529 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 361 AGAGTTTTTAATGGAGATTGGAACAATTGGACATGTCTCACATCCTAATGTCTTGTCTCT 420 Query 530 TCTTGGTTGTTGTATTGACAATGGTCTCTATCTTGTTTTCATCTTCTCTTCTAGAGGCTC 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TCTTGGTTGTTGTATTGACAATGGTCTCTATCTTGTTTTCATCTTCTCTTCTAGAGGCTC 480 Query 590 CCTTGCTTCTCTCCTTCATGATTTGAATCAAGCACCATTGGAGTGGGAGACAAGGTATAA 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGTTGCTTCTCTCCTTCATGATTTGAATCAAGCACCATTGGAGTGGGAGACAAGGTATAA 540 Query 650 GATTGCAATTGGGACAGCAAAAGGGCTTCATTATTTACACAAAGGTTGTCAGAGAAGGAT 709 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 541 GATTGCAATTGGGACAGCAAAAGGTCTTCATTATTTACACAAAGGTTGTCAGAGAAGGAT 600 Query 710 CATACACAGAGACATTAAATCCTCCAATGTTCTCTTAAACCAAGATTTTGAACCACAGAT 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CATACACAGAGACATTAAATCCTCCAATGTTCTCTTAAACCAAGATTTTGAACCACAGAT 660 Query 770 ATCTGATTTTGGATTGGCAAAATGGCTGCCTTCTCAATGGTCTCATCATTCCATTGCTCC 829 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ATCTGATTTTGGATTAGCAAAATGGCTGCCTTCTCAATGGTCTCATCATTCCATTGCTCC 720 Query 830 AATTGAAGGCACATTTGGGCACTTAGCACCAGAGTACTATACACATGGGATTGTGGATGA 889 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 721 AATTGAAGGCACATTTGGGCACTTAGCACCAGAGTACTATACACATGGGATTGTAGATGA 780 Query 890 GAAGACTGATGTGTTTGCCTTTGGAGTGTTCTTGCTTGAACTCATTTCTGGTAAAAAACC 949 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GAAGACTGATGTGTTTGCCTTTGGAGTGTTCTTGCTTGAACTCATTTCTGGTAAAAAACC 840 Query 950 TGTTGATGCTTCTCACCAAAGCCTACACAGCTGGGCAAAACTGATAATCAAAGATGGAGA 1009 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 841 TGTTGATGCTTCTCATCAAAGCCTACACAGCTGGGCAAAATTGATAATCAAAGATGGAGA 900 Query 1010 GATTGAGAAGCTGGTGGATCCGAGGATCGGTGAAGAATTTGATCTGCAACAACTTCATCG 1069 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 901 GATTGAGAAGCTGGTGGATCCGAGGATCGGTGGAGAATTTGATCTCCAACAACTTCATCG 960 Query 1070 CATTGCTTTCGCCGCGTCTCTCTGCATCCGATCTTCTTCTCTATGTCGACCTTCCATGAT 1129 ||| |||||||| ||||||||||| || |||||||| ||||||||||||||||||||||| Sbjct 961 CATAGCTTTCGCTGCGTCTCTCTGTATTCGATCTTCGTCTCTATGTCGACCTTCCATGAT 1020 Query 1130 CGAGGTCTTagaagtactacaaggagaagatatagagaaagagaaatggaaaatggaaga 1189 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1021 CGAGGTATTAGAAGTACTACAAGGAGAAGATATAGAGAAAGAAAAATGGAAAATGGAAGA 1080 Query 1190 ggaagaagaagttaaagaagagTTTTGGGGATATGAAGATCTTGAGGATTGTGAATGTGA 1249 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GGAAGAAGAAGTGAAAGAAGAGTTTTGGGGATATGAAGATCTTGAGGATTGTGAATGTGA 1140 Query 1250 TTCTTCAATCTCACTTTCTCCTCCTGACTCTATCTCTAATAGAAGTTCTTCGCATCGTAG 1309 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1141 TTCTTCAATCTCACTTTCTCCTCCTGACTCTATCTCTAATCGAAGCTCTTCGCATCGTAG 1200 Query 1310 TCGCTAGATCTAAATTTAGTTGTAAAAT 1337 |||||||||||||||||||||||||||| Sbjct 1201 TCGCTAGATCTAAATTTAGTTGTAAAAT 1228 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53364433245 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5