BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18890.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931869 jgi|Araly1|931869|scaffold_304326.1 2049 0.0
> Ahg931869 jgi|Araly1|931869|scaffold_304326.1
Length=1228
Score = 2049 bits (1109), Expect = 0.0
Identities = 1189/1228 (97%), Gaps = 3/1228 (0%)
Strand=Plus/Plus
Query 111 CTTCTTCTTCTGTTCCATTCCAAAAGAATGAAGTACATTCGAAGCAACAGCTTGAAACGT 170
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 3 CTTCTTCTTCTGTTCCATT-CAAAAAAATGAAGTACATTCGTAGCAACAGCTTGAAACGT 61
Query 171 CTCTTCTCCTTCAAACGACGCAGTTTCGACTCCGACTCCTCAGAAAACTCTTCTCCTCTC 230
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 62 CTCTTCTCCTTTAAACGACGCAGTTTCGACTCCGACTCTTCAGAAAACTCAACTCCTCAC 121
Query 231 GCTGCTTCTTCCACCAAATGCGTCGAGGGTTTTCAAGAAACAGACCAGTTTCAAAGACCC 290
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 122 ACTGCTTCTTCCACCAAATGCGTCGAGGGTTTTCAAGAAACAGAGCAGTTTCAAAGACCC 181
Query 291 AAATGGAAATGTTTCTCCTTTCAAGAAATCTA-TGACGCAACCAACGGTTTTAGCTCAGA 349
||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||||||
Sbjct 182 AAATGGAAATGTTTCTCCTTTGAAGAAATCTACT-ACGCAACCAACGGTTTCAGCTCAGA 240
Query 350 GAATTTGGTAGGTAGAGGTGGATTTGCAGAGGTGTATAAAGGGATATTGGGTAAAAACGG 409
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 241 GAATTTGGTAGGTAGAGGTGGATTTGCAGAGGTGTATAAAGGAATATTGAGTAAAAATGG 300
Query 410 tgaagagatagcagtgaagaggataacaagaggaggaagagatgatgagaggagagagaa 469
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAAGAAATAGCAGTGAAGAGGATAACAAGAGGAGGAAGAGATGATGAGAGGAGAGAGAA 360
Query 470 agagTTTTTAATGGAGATTGGAACAATAGGACATGTCTCACATCCTAATGTCTTGTCTCT 529
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 AGAGTTTTTAATGGAGATTGGAACAATTGGACATGTCTCACATCCTAATGTCTTGTCTCT 420
Query 530 TCTTGGTTGTTGTATTGACAATGGTCTCTATCTTGTTTTCATCTTCTCTTCTAGAGGCTC 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTTGGTTGTTGTATTGACAATGGTCTCTATCTTGTTTTCATCTTCTCTTCTAGAGGCTC 480
Query 590 CCTTGCTTCTCTCCTTCATGATTTGAATCAAGCACCATTGGAGTGGGAGACAAGGTATAA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTTGCTTCTCTCCTTCATGATTTGAATCAAGCACCATTGGAGTGGGAGACAAGGTATAA 540
Query 650 GATTGCAATTGGGACAGCAAAAGGGCTTCATTATTTACACAAAGGTTGTCAGAGAAGGAT 709
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 GATTGCAATTGGGACAGCAAAAGGTCTTCATTATTTACACAAAGGTTGTCAGAGAAGGAT 600
Query 710 CATACACAGAGACATTAAATCCTCCAATGTTCTCTTAAACCAAGATTTTGAACCACAGAT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATACACAGAGACATTAAATCCTCCAATGTTCTCTTAAACCAAGATTTTGAACCACAGAT 660
Query 770 ATCTGATTTTGGATTGGCAAAATGGCTGCCTTCTCAATGGTCTCATCATTCCATTGCTCC 829
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCTGATTTTGGATTAGCAAAATGGCTGCCTTCTCAATGGTCTCATCATTCCATTGCTCC 720
Query 830 AATTGAAGGCACATTTGGGCACTTAGCACCAGAGTACTATACACATGGGATTGTGGATGA 889
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 721 AATTGAAGGCACATTTGGGCACTTAGCACCAGAGTACTATACACATGGGATTGTAGATGA 780
Query 890 GAAGACTGATGTGTTTGCCTTTGGAGTGTTCTTGCTTGAACTCATTTCTGGTAAAAAACC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAAGACTGATGTGTTTGCCTTTGGAGTGTTCTTGCTTGAACTCATTTCTGGTAAAAAACC 840
Query 950 TGTTGATGCTTCTCACCAAAGCCTACACAGCTGGGCAAAACTGATAATCAAAGATGGAGA 1009
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 841 TGTTGATGCTTCTCATCAAAGCCTACACAGCTGGGCAAAATTGATAATCAAAGATGGAGA 900
Query 1010 GATTGAGAAGCTGGTGGATCCGAGGATCGGTGAAGAATTTGATCTGCAACAACTTCATCG 1069
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 901 GATTGAGAAGCTGGTGGATCCGAGGATCGGTGGAGAATTTGATCTCCAACAACTTCATCG 960
Query 1070 CATTGCTTTCGCCGCGTCTCTCTGCATCCGATCTTCTTCTCTATGTCGACCTTCCATGAT 1129
||| |||||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 961 CATAGCTTTCGCTGCGTCTCTCTGTATTCGATCTTCGTCTCTATGTCGACCTTCCATGAT 1020
Query 1130 CGAGGTCTTagaagtactacaaggagaagatatagagaaagagaaatggaaaatggaaga 1189
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1021 CGAGGTATTAGAAGTACTACAAGGAGAAGATATAGAGAAAGAAAAATGGAAAATGGAAGA 1080
Query 1190 ggaagaagaagttaaagaagagTTTTGGGGATATGAAGATCTTGAGGATTGTGAATGTGA 1249
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGAAGAAGAAGTGAAAGAAGAGTTTTGGGGATATGAAGATCTTGAGGATTGTGAATGTGA 1140
Query 1250 TTCTTCAATCTCACTTTCTCCTCCTGACTCTATCTCTAATAGAAGTTCTTCGCATCGTAG 1309
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1141 TTCTTCAATCTCACTTTCTCCTCCTGACTCTATCTCTAATCGAAGCTCTTCGCATCGTAG 1200
Query 1310 TCGCTAGATCTAAATTTAGTTGTAAAAT 1337
||||||||||||||||||||||||||||
Sbjct 1201 TCGCTAGATCTAAATTTAGTTGTAAAAT 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5