BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18900.1 Length=2729 Score E Sequences producing significant alignments: (Bits) Value Ahg480841 jgi|Araly1|480841|fgenesh2_kg.3__3542__AT2G18900.1 4080 0.0 > Ahg480841 jgi|Araly1|480841|fgenesh2_kg.3__3542__AT2G18900.1 Length=2609 Score = 4080 bits (2209), Expect = 0.0 Identities = 2487/2620 (95%), Gaps = 23/2620 (1%) Strand=Plus/Plus Query 28 TTTCTTCTTCTCTTCCCAATTTCACCGCCTCTCTCTATCGCCGGAAAT-------TA--A 78 ||||||||||||||||||||||| ||| | |||||||||||||||||| | | Sbjct 1 TTTCTTCTTCTCTTCCCAATTTCTCCG-C-CTCTCTATCGCCGGAAATCAAACAAAACCA 58 Query 79 CCATGAAACGCGGCGGAAGAAGCTACGTAACTTCACCTCCATCATTCTCCAACGACGCTA 138 |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 CCATGATTCGCGGCGGGAGAAGCTACGTAACTTCACCTCCATCATTCTCCAACGACGCTA 118 Query 139 AAAAGCTTCTCGTCTGCACAGGAAACACTGTCTCTGTTTTCAGCGCCGCCACTGGCTTAC 198 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 AAAGGCTTCTCGTCTGCACAGGAAACACTGTCTCTGTTTTCAGCGCCGCCACTGGCTTAC 178 Query 199 AGATTACTTCGCTTGAAGGTCATACAGCTCCAGTAACAACTCTAATTGTTGTTCCTGCAT 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AGATTACTTCGCTTGAAGGTCATACAGCTCCAGTAACAACTCTAATTGTTGTTCCTGCAT 238 Query 259 CAAGTCCTGCTCAAAAAATCCTTTGTTATTGTTGGACTGCTTCTCTTGATGGTACTATTC 318 | |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 239 CGAGTCCTGCTCAAAAAATCCTTTGTTATTGTTGGACTGCGTCTCTTGATGGTACAATTC 298 Query 319 GTCATTGGGATTTCTCTGGACCTGAGCTATTGAAAACTATTGATGCTCAGCTTCCGATTT 378 |||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 299 GTCATTGGGATTTCTCTGGACCTGAGCTTTTGAAAACCATTGATGCTCAGCTGCCGATTT 358 Query 379 ACTCTATGGTTATACCATCTCTTTTGAGCGAACCTCAACAAATTGATAAACGTCGTGAGT 438 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 359 ACTCTATGGTTATACCATCTCTTTTGAGTGAACCTCAACAAATTGATAAACGTCGTGAAT 418 Query 439 TGTCTGGTAAGTTGGTTGCTTATGTTTCCGTTGAGGATATAAGTGTGGTTAACCAAGGGT 498 | ||||||||| ||||||||| |||||| |||||||||||||||||||||||| |||||| Sbjct 419 TATCTGGTAAGCTGGTTGCTTTTGTTTCGGTTGAGGATATAAGTGTGGTTAACGAAGGGT 478 Query 499 CTAAAGAGTTGCGTGGACATATCCGAAGATTTAACCTCGCTAAGTCGCGTATTCCTCGTG 558 ||||||||||||||||||||||||| ||||||||||| ||||| | ||| ||||||||| Sbjct 479 CTAAAGAGTTGCGTGGACATATCCGGAGATTTAACCTTGCTAAACCTCGTGTTCCTCGTG 538 Query 559 GAGATACTTTAAAAGAGACGGCAGAACCAGAATCTATTGTTATTAGTCCCTCGGGAGAAT 618 |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 539 GAGACACTTTGAAAGAGACGGCAGAACCAGAATCTATTGTTATCAGTCCCTCGGGAGAGT 598 Query 619 TTTTCGGAATCCGTCACAAGTGTAAAATTCATATATGGGATGTTCCTTCTGGAGGATCAA 678 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 599 TTTTCGGAATCCGTCACAAGTGTAAAATTCATATATGGGATATTCCTTCTGGAGGATCAA 658 Query 679 GGCATGCGGTTTCAAGGAAGATGACATTACATCACACAAAGGTTATCAATGCTTTTGCTT 738 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 659 GGCATGCTGTTTCAAGGAAGATGACACTACATCACACAAAGGTTATCAATGCTTTTGCTT 718 Query 739 TTCATCCCACGGAGAGAGTTATAGCTGCTGGAGATGTAACTGGAAGAGTGTTGATTTGGA 798 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 719 TTCATCCCACGGAGAGAGTTATAGCTGCTGGAGATGTAACGGGAAGAGTATTGATTTGGA 778 Query 799 GAGGATTTGGTAATAGAAAACTTGCCTTGGGTAATCAAAAGAAAAAAGTGAGAGCCATGG 858 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 779 GAGGATTCGGTAATAGAAAACTTGCCTTGGGTAATCAAAAGAAAAAAGTGAGAGCAACGG 838 Query 859 TTGATTTGGACAATGCTGGAGTGAGAGGTGAAGATGATGCTGAATCTTGCACTACATGGC 918 ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 839 TTGATTTGGACAACGCTGGAGTGAGAGGTGAAGATGATACTGAATCTTGCACTACATGGC 898 Query 919 ACTGGCATTCTGCTGAAGTTAATGTCCTTAATTTCTCTTCCGATGGAGCATATTTGTATT 978 ||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 899 ACTGGCACTCTGCTGAAGTAAACGTCCTTAATTTCTCTTCCGATGGAGCATATTTGTATT 958 Query 979 CAGGGGGAAGGGAAGGGGTACTTGTCGTTTGGCAGCTAGACACAGGGAAAAAGAAATTCT 1038 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 959 CAGGGGGAAGGGAAGGGGTACTTGTCGTTTGGCAGCTAGACACAGGGAAGAAGAAATTCT 1018 Query 1039 TACCAAGGATAGGATCCCCCTTGCTGTATTTCATGTGGTCTCCAGATCCAACTCTTTCTT 1098 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1019 TACCAAGAATAGGATCTCCCTTGCTGTATTTCATGTGGTCTCCAGATCCAACTCTTTCAT 1078 Query 1099 CTGTGGTTTGTGCAGATAATCAGATCCATTTGCTTAAAATGCCTTCCATGGAGATCTTAA 1158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 CTGTGGTTTGTGCAGATAATCAGATCCATTTGCTTAAAATGCCTTCCATGGAGATCTTAA 1138 Query 1159 GGACCATTTCTGGAATCAAGCCTCCCCCATCATTGCCTAGGATGTATGAAGGCTTGGCTA 1218 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1139 GGACCATTTCTGGAATCAAGGCTCCCCCATCATTGCCTAGGATGTATGAAGGCCTGGCTA 1198 Query 1219 GTACTGTTGCCTTTGATCGATCTTCTGGCATAGCTGCTTTGTGCACAGAGAATTATTGTG 1278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 GTACTGTTGCCTTTGATCGATCTTCTGGCATAGCTGCTTTGTGCACAGAGAATTATTGTG 1258 Query 1279 TACAGCTATATAATCTTCTCAATGACCGGGGAATTTCAGAGATTCAAGTTTGTGAGAGAA 1338 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TACAGCTATACAATCTTCTTAATGACCGGGGAATTTCAGAGATTCAAGTTTGTGAGAGAA 1318 Query 1339 ACCATCAACCAGGAGATGAGATCACAGTTGTGGTGACAGCGGTTGCTCTCTCCCTGGATG 1398 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1319 ACCATCAACCAGGCGATGAAATCACAGTTGTGGTGACAGCGGTTGCTCTCTCCCTGGATG 1378 Query 1399 GCTCAGTGATGAGTACAACCGAGGTGAAACTTCCGGAAGATGGAATAGGAGGCTTAGTGT 1458 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1379 GCTCAGTGATGAGTACAACCGAGGTGAAACTTCCGGAAGATGGCATAGGAGGCTTAGTGT 1438 Query 1459 CCCTCAAGTTTTGGGCGTCTGAACCAGACAGCAAAACTTTCACCTTATCCACAATCGTAT 1518 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 CCCTCAAGTTTTGGGCGTGTGAACCAGACAGCAAAACTTTCACCTTATCCACAATCGTAT 1498 Query 1519 ATGAACCTCATAGGGATGCCGGTGTCTCAGCCATTGTGTTCCACCCTACCCGCTCCATGG 1578 |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1499 ATGAACCTCACAGGGATGCCGGTGTGTCAGCCATTGCGTTCCACCCTACCCGCTCCATGG 1558 Query 1579 CAGTGAGTACATCATTCGGTGGTGACTTCAAGATTTGGGTATGCAACAGTGACAAGAACC 1638 |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 1559 CAGTTAGTACATCATTCGGTGGGGACTTCAAGATTTGGGTTTGCAACAGTGACAAAAACC 1618 Query 1639 AGACGGATAAAGACTCTAGCTGGATATGTCACGCTGTTGGCTCTTATAAGAAGAAACCAA 1698 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1619 AGACGGATAAGGACTCTAGCTGGATATGTCACGCTGTTGGCTCTTATAAGAAGAAGCCAA 1678 Query 1699 TGACTGCTGCTGCTTTCTCTGGGGATGGCACTGTTATGGCTGTTGCGGCTGAGAATGTTA 1758 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| Sbjct 1679 TGACTGCTGCTGCTTTCTCTGGGGATGGCACTGTTCTGGCTGTTGCAGCTGAGACTGTTA 1738 Query 1759 TTACACTGTGGAATCCAGATAAGAACATTCTCTTGTCTGTTCTAGGATCGACACTCACGC 1818 |||| || ||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 1739 TTACGCTTTGGAATCCAGACAAGAACATTCTCTTGTCTGTTCTAGGAGCGACACTCACGC 1798 Query 1819 CTATCACGAAGCTCTGTTTCGCTGGAAAGTCTGAGTTCCTTGTTGCTGCATCCCATATTC 1878 ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||| Sbjct 1799 CTATCACAAAGCTCTGTTTCGCGGGAAAGTCTGAGTTTCTTGTTGCTGCATCCCATTTTC 1858 Query 1879 CAAGACCTGAACTATCTGTTTGGAATACATCAAAGTTATCTTTATCATGGTCATATGGGT 1938 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 1859 CAAGACCTGAACTATCTGTTTGGAATACATCAAAGTTATCTATATCATGGTCATATGGAT 1918 Query 1939 TACGCA-TAGAAGCTGTCACCTCTGCAGTGGATTCGTCAGCATTTGCAGTCTTGGCTGTG 1997 |||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1919 TACG-AGTAGAAGCTGTCACCTCTGCAGTGGATTCATCAGCATTTGCAGTCTTGGCTGTG 1977 Query 1998 ATCCCAAAAACTTTTAAAACAGATGAATCTAAGGAGAACATCTTCCGTGGTAGAGATGGT 2057 |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1978 ATCCCAAAAAGTTTTAAAACAGATAAATCTAAGGAGAACATCTTCCGTGGTAGAGATGGT 2037 Query 2058 GCCATTCTTTTGTTTAACGGATCAGATCCCAAGCCGGTATCTATATGGACTGTGATGAAG 2117 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct 2038 GCCATTCTTTTGTTTAACGGATCAGATCCTAAGCCAGTATCTATATGGACTGTGATTAAG 2097 Query 2118 GCTAGGGGAGGATCAATCTCATTTTTAGAAGGAGATAAGTCTCAGCTTCGCCTTGCATAT 2177 |||| ||||||||||||||||||||||| | ||| ||||| ||||||||||| || ||| Sbjct 2098 GCTAAGGGAGGATCAATCTCATTTTTAG--G-AGACAAGTCGCAGCTTCGCCTAGCGTAT 2154 Query 2178 GTAAATGGAAGCCATGAATATGTTGTCTTTGATCCCAATAGTGATGAGTCACATGAGCGT 2237 ||||||||||||| ||| |||||||| |||||||||||||| ||||||||||| |||||| Sbjct 2155 GTAAATGGAAGCCGTGAGTATGTTGTTTTTGATCCCAATAGCGATGAGTCACACGAGCGT 2214 Query 2238 AGCGCTGTTGACTACGATGGTCTTGCTGGTCTGGAAGAGACAGGAGACGCCGGGTACACA 2297 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2215 AGCGCTGTTGACTACGACGGTCTTGCTGGTCTGGAAGAGACAGGAGACGCCGGGTACACA 2274 Query 2298 TCCTTATACGGGCAGTTACCTGATTATGACAAGAAGAGAATGGAGGATGTTGAGTCGTTG 2357 ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2275 TCCTTGTATGGGCAGTTACCTGATTATGACAAGAAGAGAATGGAGGATGTTGACTCGTTA 2334 Query 2358 GGAACACCGTTTGTATCATCAGAAAGACCGTGGGAAACAATATTCAGCGGCTCCACACTA 2417 | |||||| ||| |||||||||| || || |||||||| |||||||||||||| |||||| Sbjct 2335 GCAACACCATTTATATCATCAGAGAGGCCATGGGAAACGATATTCAGCGGCTCTACACTA 2394 Query 2418 AATTTCCCGCCACTTCAGAAATTATGTGCTGAGTTCTTTGAGTCCCTAATGGAGAAAAGA 2477 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2395 AATTTCCCGCCACTTCAGAAATTATGCGCTGAGTTCTTTGAGTCCCTAATGGAGAAAAGA 2454 Query 2478 ACGGCCGTTGTGGAATGAGAC-C-TTACACAAAAAGTTTTTTGTAAGGTTTATTATACAG 2535 ||||||||||||||||||||| | |||||||||||| |||||| ||||||| | |||||| Sbjct 2455 ACGGCCGTTGTGGAATGAGACACCTTACACAAAAAGGTTTTTGGAAGGTTT-T-ATACAG 2512 Query 2536 AAGAAGAGCTCATTTTTGCAGCCATCTTTGGTGAGCAAAGTTGTTGAGTTTGTTCAGGAA 2595 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2513 AAGG-GA--TCATTTTTGCAGCCATCTTTGGTGAGCAAAGTTGTTGAGTTTGTTCAGGAA 2569 Query 2596 ATTTTGTAGCTCTTTGTTGTGAGATTCGGTCCAGTTTATT 2635 ||||||||||| |||||||||||||||||||||||||||| Sbjct 2570 ATTTTGTAGCTTTTTGTTGTGAGATTCGGTCCAGTTTATT 2609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102957932235 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5