BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18900.1
Length=2729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480841 jgi|Araly1|480841|fgenesh2_kg.3__3542__AT2G18900.1 4080 0.0
> Ahg480841 jgi|Araly1|480841|fgenesh2_kg.3__3542__AT2G18900.1
Length=2609
Score = 4080 bits (2209), Expect = 0.0
Identities = 2487/2620 (95%), Gaps = 23/2620 (1%)
Strand=Plus/Plus
Query 28 TTTCTTCTTCTCTTCCCAATTTCACCGCCTCTCTCTATCGCCGGAAAT-------TA--A 78
||||||||||||||||||||||| ||| | |||||||||||||||||| | |
Sbjct 1 TTTCTTCTTCTCTTCCCAATTTCTCCG-C-CTCTCTATCGCCGGAAATCAAACAAAACCA 58
Query 79 CCATGAAACGCGGCGGAAGAAGCTACGTAACTTCACCTCCATCATTCTCCAACGACGCTA 138
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CCATGATTCGCGGCGGGAGAAGCTACGTAACTTCACCTCCATCATTCTCCAACGACGCTA 118
Query 139 AAAAGCTTCTCGTCTGCACAGGAAACACTGTCTCTGTTTTCAGCGCCGCCACTGGCTTAC 198
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AAAGGCTTCTCGTCTGCACAGGAAACACTGTCTCTGTTTTCAGCGCCGCCACTGGCTTAC 178
Query 199 AGATTACTTCGCTTGAAGGTCATACAGCTCCAGTAACAACTCTAATTGTTGTTCCTGCAT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGATTACTTCGCTTGAAGGTCATACAGCTCCAGTAACAACTCTAATTGTTGTTCCTGCAT 238
Query 259 CAAGTCCTGCTCAAAAAATCCTTTGTTATTGTTGGACTGCTTCTCTTGATGGTACTATTC 318
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 239 CGAGTCCTGCTCAAAAAATCCTTTGTTATTGTTGGACTGCGTCTCTTGATGGTACAATTC 298
Query 319 GTCATTGGGATTTCTCTGGACCTGAGCTATTGAAAACTATTGATGCTCAGCTTCCGATTT 378
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 299 GTCATTGGGATTTCTCTGGACCTGAGCTTTTGAAAACCATTGATGCTCAGCTGCCGATTT 358
Query 379 ACTCTATGGTTATACCATCTCTTTTGAGCGAACCTCAACAAATTGATAAACGTCGTGAGT 438
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 359 ACTCTATGGTTATACCATCTCTTTTGAGTGAACCTCAACAAATTGATAAACGTCGTGAAT 418
Query 439 TGTCTGGTAAGTTGGTTGCTTATGTTTCCGTTGAGGATATAAGTGTGGTTAACCAAGGGT 498
| ||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 419 TATCTGGTAAGCTGGTTGCTTTTGTTTCGGTTGAGGATATAAGTGTGGTTAACGAAGGGT 478
Query 499 CTAAAGAGTTGCGTGGACATATCCGAAGATTTAACCTCGCTAAGTCGCGTATTCCTCGTG 558
||||||||||||||||||||||||| ||||||||||| ||||| | ||| |||||||||
Sbjct 479 CTAAAGAGTTGCGTGGACATATCCGGAGATTTAACCTTGCTAAACCTCGTGTTCCTCGTG 538
Query 559 GAGATACTTTAAAAGAGACGGCAGAACCAGAATCTATTGTTATTAGTCCCTCGGGAGAAT 618
|||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 539 GAGACACTTTGAAAGAGACGGCAGAACCAGAATCTATTGTTATCAGTCCCTCGGGAGAGT 598
Query 619 TTTTCGGAATCCGTCACAAGTGTAAAATTCATATATGGGATGTTCCTTCTGGAGGATCAA 678
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 TTTTCGGAATCCGTCACAAGTGTAAAATTCATATATGGGATATTCCTTCTGGAGGATCAA 658
Query 679 GGCATGCGGTTTCAAGGAAGATGACATTACATCACACAAAGGTTATCAATGCTTTTGCTT 738
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 659 GGCATGCTGTTTCAAGGAAGATGACACTACATCACACAAAGGTTATCAATGCTTTTGCTT 718
Query 739 TTCATCCCACGGAGAGAGTTATAGCTGCTGGAGATGTAACTGGAAGAGTGTTGATTTGGA 798
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 719 TTCATCCCACGGAGAGAGTTATAGCTGCTGGAGATGTAACGGGAAGAGTATTGATTTGGA 778
Query 799 GAGGATTTGGTAATAGAAAACTTGCCTTGGGTAATCAAAAGAAAAAAGTGAGAGCCATGG 858
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 779 GAGGATTCGGTAATAGAAAACTTGCCTTGGGTAATCAAAAGAAAAAAGTGAGAGCAACGG 838
Query 859 TTGATTTGGACAATGCTGGAGTGAGAGGTGAAGATGATGCTGAATCTTGCACTACATGGC 918
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 839 TTGATTTGGACAACGCTGGAGTGAGAGGTGAAGATGATACTGAATCTTGCACTACATGGC 898
Query 919 ACTGGCATTCTGCTGAAGTTAATGTCCTTAATTTCTCTTCCGATGGAGCATATTTGTATT 978
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 899 ACTGGCACTCTGCTGAAGTAAACGTCCTTAATTTCTCTTCCGATGGAGCATATTTGTATT 958
Query 979 CAGGGGGAAGGGAAGGGGTACTTGTCGTTTGGCAGCTAGACACAGGGAAAAAGAAATTCT 1038
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 CAGGGGGAAGGGAAGGGGTACTTGTCGTTTGGCAGCTAGACACAGGGAAGAAGAAATTCT 1018
Query 1039 TACCAAGGATAGGATCCCCCTTGCTGTATTTCATGTGGTCTCCAGATCCAACTCTTTCTT 1098
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 TACCAAGAATAGGATCTCCCTTGCTGTATTTCATGTGGTCTCCAGATCCAACTCTTTCAT 1078
Query 1099 CTGTGGTTTGTGCAGATAATCAGATCCATTTGCTTAAAATGCCTTCCATGGAGATCTTAA 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CTGTGGTTTGTGCAGATAATCAGATCCATTTGCTTAAAATGCCTTCCATGGAGATCTTAA 1138
Query 1159 GGACCATTTCTGGAATCAAGCCTCCCCCATCATTGCCTAGGATGTATGAAGGCTTGGCTA 1218
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1139 GGACCATTTCTGGAATCAAGGCTCCCCCATCATTGCCTAGGATGTATGAAGGCCTGGCTA 1198
Query 1219 GTACTGTTGCCTTTGATCGATCTTCTGGCATAGCTGCTTTGTGCACAGAGAATTATTGTG 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTACTGTTGCCTTTGATCGATCTTCTGGCATAGCTGCTTTGTGCACAGAGAATTATTGTG 1258
Query 1279 TACAGCTATATAATCTTCTCAATGACCGGGGAATTTCAGAGATTCAAGTTTGTGAGAGAA 1338
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TACAGCTATACAATCTTCTTAATGACCGGGGAATTTCAGAGATTCAAGTTTGTGAGAGAA 1318
Query 1339 ACCATCAACCAGGAGATGAGATCACAGTTGTGGTGACAGCGGTTGCTCTCTCCCTGGATG 1398
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACCATCAACCAGGCGATGAAATCACAGTTGTGGTGACAGCGGTTGCTCTCTCCCTGGATG 1378
Query 1399 GCTCAGTGATGAGTACAACCGAGGTGAAACTTCCGGAAGATGGAATAGGAGGCTTAGTGT 1458
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1379 GCTCAGTGATGAGTACAACCGAGGTGAAACTTCCGGAAGATGGCATAGGAGGCTTAGTGT 1438
Query 1459 CCCTCAAGTTTTGGGCGTCTGAACCAGACAGCAAAACTTTCACCTTATCCACAATCGTAT 1518
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CCCTCAAGTTTTGGGCGTGTGAACCAGACAGCAAAACTTTCACCTTATCCACAATCGTAT 1498
Query 1519 ATGAACCTCATAGGGATGCCGGTGTCTCAGCCATTGTGTTCCACCCTACCCGCTCCATGG 1578
|||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1499 ATGAACCTCACAGGGATGCCGGTGTGTCAGCCATTGCGTTCCACCCTACCCGCTCCATGG 1558
Query 1579 CAGTGAGTACATCATTCGGTGGTGACTTCAAGATTTGGGTATGCAACAGTGACAAGAACC 1638
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1559 CAGTTAGTACATCATTCGGTGGGGACTTCAAGATTTGGGTTTGCAACAGTGACAAAAACC 1618
Query 1639 AGACGGATAAAGACTCTAGCTGGATATGTCACGCTGTTGGCTCTTATAAGAAGAAACCAA 1698
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1619 AGACGGATAAGGACTCTAGCTGGATATGTCACGCTGTTGGCTCTTATAAGAAGAAGCCAA 1678
Query 1699 TGACTGCTGCTGCTTTCTCTGGGGATGGCACTGTTATGGCTGTTGCGGCTGAGAATGTTA 1758
||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 1679 TGACTGCTGCTGCTTTCTCTGGGGATGGCACTGTTCTGGCTGTTGCAGCTGAGACTGTTA 1738
Query 1759 TTACACTGTGGAATCCAGATAAGAACATTCTCTTGTCTGTTCTAGGATCGACACTCACGC 1818
|||| || ||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1739 TTACGCTTTGGAATCCAGACAAGAACATTCTCTTGTCTGTTCTAGGAGCGACACTCACGC 1798
Query 1819 CTATCACGAAGCTCTGTTTCGCTGGAAAGTCTGAGTTCCTTGTTGCTGCATCCCATATTC 1878
||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 1799 CTATCACAAAGCTCTGTTTCGCGGGAAAGTCTGAGTTTCTTGTTGCTGCATCCCATTTTC 1858
Query 1879 CAAGACCTGAACTATCTGTTTGGAATACATCAAAGTTATCTTTATCATGGTCATATGGGT 1938
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1859 CAAGACCTGAACTATCTGTTTGGAATACATCAAAGTTATCTATATCATGGTCATATGGAT 1918
Query 1939 TACGCA-TAGAAGCTGTCACCTCTGCAGTGGATTCGTCAGCATTTGCAGTCTTGGCTGTG 1997
|||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1919 TACG-AGTAGAAGCTGTCACCTCTGCAGTGGATTCATCAGCATTTGCAGTCTTGGCTGTG 1977
Query 1998 ATCCCAAAAACTTTTAAAACAGATGAATCTAAGGAGAACATCTTCCGTGGTAGAGATGGT 2057
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1978 ATCCCAAAAAGTTTTAAAACAGATAAATCTAAGGAGAACATCTTCCGTGGTAGAGATGGT 2037
Query 2058 GCCATTCTTTTGTTTAACGGATCAGATCCCAAGCCGGTATCTATATGGACTGTGATGAAG 2117
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 2038 GCCATTCTTTTGTTTAACGGATCAGATCCTAAGCCAGTATCTATATGGACTGTGATTAAG 2097
Query 2118 GCTAGGGGAGGATCAATCTCATTTTTAGAAGGAGATAAGTCTCAGCTTCGCCTTGCATAT 2177
|||| ||||||||||||||||||||||| | ||| ||||| ||||||||||| || |||
Sbjct 2098 GCTAAGGGAGGATCAATCTCATTTTTAG--G-AGACAAGTCGCAGCTTCGCCTAGCGTAT 2154
Query 2178 GTAAATGGAAGCCATGAATATGTTGTCTTTGATCCCAATAGTGATGAGTCACATGAGCGT 2237
||||||||||||| ||| |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 2155 GTAAATGGAAGCCGTGAGTATGTTGTTTTTGATCCCAATAGCGATGAGTCACACGAGCGT 2214
Query 2238 AGCGCTGTTGACTACGATGGTCTTGCTGGTCTGGAAGAGACAGGAGACGCCGGGTACACA 2297
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 AGCGCTGTTGACTACGACGGTCTTGCTGGTCTGGAAGAGACAGGAGACGCCGGGTACACA 2274
Query 2298 TCCTTATACGGGCAGTTACCTGATTATGACAAGAAGAGAATGGAGGATGTTGAGTCGTTG 2357
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2275 TCCTTGTATGGGCAGTTACCTGATTATGACAAGAAGAGAATGGAGGATGTTGACTCGTTA 2334
Query 2358 GGAACACCGTTTGTATCATCAGAAAGACCGTGGGAAACAATATTCAGCGGCTCCACACTA 2417
| |||||| ||| |||||||||| || || |||||||| |||||||||||||| ||||||
Sbjct 2335 GCAACACCATTTATATCATCAGAGAGGCCATGGGAAACGATATTCAGCGGCTCTACACTA 2394
Query 2418 AATTTCCCGCCACTTCAGAAATTATGTGCTGAGTTCTTTGAGTCCCTAATGGAGAAAAGA 2477
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2395 AATTTCCCGCCACTTCAGAAATTATGCGCTGAGTTCTTTGAGTCCCTAATGGAGAAAAGA 2454
Query 2478 ACGGCCGTTGTGGAATGAGAC-C-TTACACAAAAAGTTTTTTGTAAGGTTTATTATACAG 2535
||||||||||||||||||||| | |||||||||||| |||||| ||||||| | ||||||
Sbjct 2455 ACGGCCGTTGTGGAATGAGACACCTTACACAAAAAGGTTTTTGGAAGGTTT-T-ATACAG 2512
Query 2536 AAGAAGAGCTCATTTTTGCAGCCATCTTTGGTGAGCAAAGTTGTTGAGTTTGTTCAGGAA 2595
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2513 AAGG-GA--TCATTTTTGCAGCCATCTTTGGTGAGCAAAGTTGTTGAGTTTGTTCAGGAA 2569
Query 2596 ATTTTGTAGCTCTTTGTTGTGAGATTCGGTCCAGTTTATT 2635
||||||||||| ||||||||||||||||||||||||||||
Sbjct 2570 ATTTTGTAGCTTTTTGTTGTGAGATTCGGTCCAGTTTATT 2609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102957932235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5