BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G18910.1

Length=911
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931867 jgi|Araly1|931867|scaffold_304324.1                        717    0.0  


> Ahg931867 jgi|Araly1|931867|scaffold_304324.1
Length=441

 Score =  717 bits (388),  Expect = 0.0
 Identities = 420/436 (96%), Gaps = 0/436 (0%)
 Strand=Plus/Plus

Query  185  tctctcAATTTAACACTTTCAAGATGCCGATCAACAAAGACCCATCAACACCTCCTCCTG  244
            ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TCTCTCAATCTCTCACTTTCAAGATGCCGATCAACAAAGACCCATCAACACCTCCTCCTG  60

Query  245  TTATCGGAAAAATCGGTCCTTACACTGTCTTTATGACTCCTCCTGCGACTCCTAAACCAC  304
            ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct  61   TTATCGGAAAAATCGGTCCTTACACTGTCTTTATGACTCCTCCAGCAAATCCTAAACCAC  120

Query  305  CTGAATCTCCCTCCGCTGTGTCTCAGAAGCCTGTGATGGCACCACCGGTTCTTCCTCCGC  364
            |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTGAATCTCCCTCCGCCGTCTCTCAGAAGCCTGTGATGGCACCACCGGTTCTTCCTCCGC  180

Query  365  CGCAGCAGTTTAAATCGGTGGCTTCTTCTGACCAGGACGGCTCAGTTTTGGGGTTCTTTA  424
            ||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct  181  CGCAGCAGTTTAAGTCGGTGGCTTCCTCTGAACAAGACGGCTCAGTTTTGGGGTTCTTTA  240

Query  425  AAAACGCCGTCACAAAGGTTCAAAATGCACATTCAAGTGTGGATGATCATTTGGTGAGGT  484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  241  AAAACGCCGTCACAAAGGTTCAAAATGCACATTCAAGTGTGGATGATCATTTGGTGAGAT  300

Query  485  GGTTTGGGTTAAACCAATCTAAGTATCAGTGGGCTTTGGATGAGTACTACGAAAGCAAAG  544
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct  301  GGTTTGGGTTAAACCAATCAAAGTATCAGTGGGCTTTGGATGAGTACTACGAAACCAAAG  360

Query  545  AATCAGATATGAAGACCGTGAAAGCAAAGGAGATGCCGGGGAAAGTACAGAGTGTATAAG  604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AATCAGATATGAAGACCGTGAAAGCAAAGGAGATGCCGGGGAAAGTACAGAGTGTATAAG  420

Query  605  CAACCATGTATAAACT  620
            ||||||| ||||||||
Sbjct  421  CAACCATATATAAACT  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33776904462


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5