BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18915.2
Length=2284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343571 jgi|Araly1|343571|fgenesh1_pg.C_scaffold_3003334 2892 0.0
Ahg921495 jgi|Araly1|921495|scaffold_102776.1 418 9e-116
Ahg930924 jgi|Araly1|930924|scaffold_303381.1 411 2e-113
Ahg906699 jgi|Araly1|906699|Al_scaffold_0003_3827 388 7e-107
> Ahg343571 jgi|Araly1|343571|fgenesh1_pg.C_scaffold_3003334
Length=1824
Score = 2892 bits (1566), Expect = 0.0
Identities = 1742/1828 (95%), Gaps = 8/1828 (0%)
Strand=Plus/Plus
Query 241 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATGAAGTGGCGGAGGATGGATGG 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATGAAGTGGCGGAGGATGGATGG 60
Query 301 TTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGCACGGCGCCG 360
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTCGGCGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGAACGGCGCCG 120
Query 361 TGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAACCCTATCATTTATGTTAACACT 420
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAACCCTATCATTTATGTTAACACT 180
Query 421 GTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGTTATTGGTCGAAATTGCCGTTTC 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 181 GTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGTTATTGGTCGAAATTGCCGGTTC 240
Query 481 TTGCAATGTAGAGGGCCATTTACTAAAAGAAGGCATCC-AATGGTAGATTCTACAATTGT 539
|| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 241 TTACAATGTAGAGGGCCATTTGCTAAAAGAAGGCATCCAAAT-GTAGATTCTACAATTGT 299
Query 540 AG-CGAAGATGCGACAATGTCTAGAAAATGGCATCGAGTTTCAAGGCGAGTTGCTCAACT 598
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 -GACGAAGATGCGGCAATGTCTAGAAAATGGCATCGAGTTTCAAGGCGAGTTGCTCAACT 358
Query 599 TTCGGAAAGATGGATCTCCCTTGATGAACAAGCTGCGTCTAGTCCCTATCCGTGAAGAAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTCGGAAAGATGGATCTCCCTTGATGAACAAGCTGCGTCTAGTCCCTATCCGTGAAGAAG 418
Query 659 ACGAAATCACTCATTTCATAGGCGTTCTCTTATTTACAGATGCAAAAATTGATCTTGGCC 718
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 419 ACGAAATCACTCATTTCATAGGCGTTCTTTTATTCACAGATGCAAAAATTGATCTTGGCC 478
Query 719 CATCTCCTGATTTATCTGCAAAAGAAATTCCTAGAATATCTCGCTCATTTACTTCTGCTT 778
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 CATCTCCTGATTTATCTGCAAAAGAAATTCCAAGAATATCTCGCTCATTTACTTCTGCTT 538
Query 779 TACCAATCGGAGAGCGTAATGTTTCTCGTGGACTCTGTGGGATATTCGAACTGAGTGATG 838
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 TACCAATCGGAGAGCGTAATGTTTCTCGTGGACTTTGTGGGATATTCGAACTGAGTGATG 598
Query 839 AAGTAATAGCTATCAAGATATTGTCACAGTTGACTCCTGGTGATATTGCATCGGTTGGTT 898
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGGTCATAGCTATCAAGATATTGTCACAGTTGACTCCTGGTGATATTGCATCGGTTGGTT 658
Query 899 GTGTATGTAGGCGGCTCAATGAGTTGACAAAGAATGATGATGTGTGGAGAATGGTCTGTC 958
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 659 GTGTATGTCGGCGGCTCAATGAGTTGACAAAGAATGATGATGTATGGAGAATGGTCTGTC 718
Query 959 AAAACACATGGGGTACCGAGGCAACACGTGTTCTTGAGAGTGTTCCCGGTGCAAAAAGGA 1018
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 719 AAAACACATGGGGTACAGAGGCAACACGTGTTCTTGAGAGTGTTCCTGGTGCAAAGAGGA 778
Query 1019 TTGGTTGGGTGCGACTGGCCCGAGAGTTCACCACTCACGAAGCAACAGCATGGAGGAAGT 1078
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 779 TCGGTTGGGTGCGACTGGCCCGAGAGTTTACCACACACGAAGCAACAGCATGGAGGAAGT 838
Query 1079 TTTCAGTTGGAGGTACTGTTGAGCCTTCTCGGTGTAATTTCAGCGCATGTGCAGTTGGGA 1138
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 839 TTTCGGTTGGAGGTACTGTTGAGCCTTCCCGGTGTAATTTCAGTGCATGTGCAGTTGGGA 898
Query 1139 ACAGGATTGTTATCTTTGGCGGGGAAGGTGTGAATATGCAGCCGATGAATGATACATTTG 1198
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 ACAGGATTGTTATCTTTGGCGGGGAAGGTGTAAATATGCAGCCGATGAATGATACATTTG 958
Query 1199 TGTTGGACCTTGGCTCGAGTAGTCCCGAGTGGAAATCTGTTCTGGTCAGCTCTCCTCCTC 1258
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 959 TGTTGGACCTTGGCTCGAGTAGCCCCGAGTGGAAATCCGTTCTGGTCAGCTCTCCTCCAC 1018
Query 1259 CGGGTCGCTGGGGTCACACACTTTCTTGTGTCAACGGTTCCCGTTTAGTAGTGTTTGGAG 1318
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1019 CGGGGCGCTGGGGTCACACACTTTCTTGTGTCAATGGATCCCGTTTAGTAGTGTTTGGAG 1078
Query 1319 GTTACGGGAGCCACGGATTACTCAATGATGTGTTCTTATTAGACCTTGATGCAGACCCAC 1378
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1079 GTTACGGGAGCCACGGATTACTCAACGATGTGTTCTTATTAGACCTTGATGCAGACCCGC 1138
Query 1379 CAAGCTGGAGGGAAGTATCCGGATTGGCCCCTCCAATACCAAGATCATGGCACAGTTCGT 1438
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 CAAGCTGGAGAGAAGTATCCGGATTGGCTCCTCCAATACCAAGATCATGGCACAGTTCGT 1198
Query 1439 GCACACTTGATGGCACTAAGCTGATTGTATCTGGTGGTTGTGCTGATTCAGGAGCTCTAC 1498
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1199 GCACACTTGATGGCACTAAGCTGATTGTATCAGGTGGTTGTGCTGATTCAGGAGCTCTAC 1258
Query 1499 TCAGCGATACATTCCTGCTTGACCTATCGATGGATATACCTG-CTTGGAGGGAGATACCG 1557
||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 1259 TCAGCGATACATTCCTGCTTGACCTTTCGATGGATATACC-GACTTGGAGGGAGATACCA 1317
Query 1558 GTTCCATGGACTCCCCCATCTCGCCTCGGGCATACTCTAACTGTCTATGGTGACCGCAAG 1617
|||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1318 GTTCCATGGACTCCTCCATCTCGCCTCGGACATACACTAACCGTCTATGGTGACCGCAAG 1377
Query 1618 ATTCTTATGTTTGGCGGTCTAGCTAAAAACGGTACTTTGAGATTCCGCTCTAACGATGTA 1677
|| || |||||||||||||| || |||| |||| || |||||||||||||||||||||||
Sbjct 1378 ATCCTCATGTTTGGCGGTCTTGCCAAAAGCGGTTCTCTGAGATTCCGCTCTAACGATGTA 1437
Query 1678 TACACGATGGATCTTAGCGAGGATGAACCGAGTTGGAGACCTGTGATTGGGTATGGATCT 1737
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1438 TACACGATGGATCTTAGCGAGGATGAGCCAAGTTGGAGACCCGTGATTGGGTATGGATCT 1497
Query 1738 AGCCTCCCCGGAGGCATGGCAGCTCCACCACCAAGGCTGGACCATGTGGCAATCAGCCTT 1797
|||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct 1498 AGCCTCCCGGGAGGCATGGCAGCTCCGCCATCAAGGCTGGATCATGTGGCAATCAGCCTT 1557
Query 1798 CCCGGTGGTAGAATCTTGATCTTTGGTGGTTCGGTTGCAGGGCTTGACTCGGCTTCTCAG 1857
|| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 1558 CCTGGTGGTAGAATCTTGATCTTTGGTGGTTCAGTTGCAGGGCTTGACTCAGCATCTCAG 1617
Query 1858 CTTTATCTTCTTGATCCAA-ATGAGGAGAAACCGGCATGGAGAATACTGAATGTTCAGGG 1916
||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 1618 CTTTATCTTCTTGATCCAACA-GAGGAGAAACCAGCATGGAGAATACTGAATGTTCAGGG 1676
Query 1917 AGGTCCGCCGAGGTTTGCATGGGGACACACAACATGTGTGGTCGGAGGAACTCGATTGGT 1976
|||||||||||||||||| ||||||||||| || ||||| |||||||||||||| |||||
Sbjct 1677 AGGTCCGCCGAGGTTTGCGTGGGGACACACCACTTGTGTAGTCGGAGGAACTCGGTTGGT 1736
Query 1977 CGTATTAGGTGGTCAGACCGGTGAAGAGTGGATGTTAAATGAAGCACATGAACTGTTACT 2036
||| ||||||||||| |||||||||||||||||| |||||||||| |||||||| ||| |
Sbjct 1737 CGTCTTAGGTGGTCAAACCGGTGAAGAGTGGATGCTAAATGAAGCTCATGAACTATTATT 1796
Query 2037 AGCAACTTCTACCACTGCAAGTACTTGA 2064
|||||| ||||| |||||||| ||||||
Sbjct 1797 AGCAACGTCTACTACTGCAAGCACTTGA 1824
> Ahg921495 jgi|Araly1|921495|scaffold_102776.1
Length=279
Score = 418 bits (226), Expect = 9e-116
Identities = 244/253 (96%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 221 GGGTGTGTATGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATG 280
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GGGTGTGTAAGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATG 60
Query 281 AAGTGGCGGAGGATGGATGGTTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTA 340
||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 61 AAGTGGCGGAGGATGGATGGTTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGGTA 120
Query 341 GTCTTCCTGGCACGGCGCCGTGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAACC 400
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 121 GTCTTCCTGGAACGGCGCCGTGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAACC 180
Query 401 CTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGTTA 460
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 CTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGTTA 240
Query 461 TTGGTCGAAATTG 473
|||||||||||||
Sbjct 241 TTGGTCGAAATTG 253
> Ahg930924 jgi|Araly1|930924|scaffold_303381.1
Length=281
Score = 411 bits (222), Expect = 2e-113
Identities = 244/255 (96%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 219 GTGGGTGTGTATGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGA 278
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGGGTGTGTAAGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGA 60
Query 279 TGAAGTGGCGGAGGATGGATGGTTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGG 338
||| ||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct 61 TGAGGTGGCGGAGGATGGATGGTTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGG 120
Query 339 TAGTCTTCCTGGCACGGCGCCGTGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAA 398
|||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 121 TAGTCTTCCTGGAACAGCGTCGTGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAA 180
Query 399 CCCTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGT 458
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CCCTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGT 240
Query 459 TATTGGTCGAAATTG 473
|||||||||||||||
Sbjct 241 TATTGGTCGAAATTG 255
> Ahg906699 jgi|Araly1|906699|Al_scaffold_0003_3827
Length=288
Score = 388 bits (210), Expect = 7e-107
Identities = 226/234 (97%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 241 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATGAAGTGGCGGAGGATGGATGG 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATGAAGTGGCGGAGGATGGATGG 60
Query 301 TTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGCACGGCGCCG 360
||||| |||| |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGGTAGTCTTCCTGGAACGGCGCCG 120
Query 361 TGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAACCCTATCATTTATGTTAACACT 420
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAACCCTATCATTTATGTTAACACT 180
Query 421 GTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGTTATTGGTCGAAATTGC 474
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGTTATTGGTCGAAATTGC 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86007773210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5