BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G18930.1

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg347293 jgi|Araly1|347293|fgenesh1_pg.C_scaffold_5000685           244    2e-64


> Ahg347293 jgi|Araly1|347293|fgenesh1_pg.C_scaffold_5000685
Length=474

 Score =  244 bits (132),  Expect = 2e-64
 Identities = 183/208 (88%), Gaps = 2/208 (1%)
 Strand=Plus/Plus

Query  2    TGGGAGAGCCACCAAACAAGTGGAATGAAAGCAATAGATGGGTTGACCATTCACATGTCA  61
            ||||||||||| ||||||||||| | ||||||| |||||||| || ||||| ||||| ||
Sbjct  56   TGGGAGAGCCATCAAACAAGTGGCAGGAAAGCAGTAGATGGGATGGCCATTTACATGACA  115

Query  62   CTGAGGTGGTCGAGACTTTGCCGG-AGAAAACCAGTAAATCGGCTGATGCAAATCTGGAG  120
            |||||  ||||||||| ||||||| || ||| ||||| ||||| |||||||||| | |||
Sbjct  116  CTGAGCAGGTCGAGACCTTGCCGGAAG-AAAGCAGTAGATCGGTTGATGCAAATGTAGAG  174

Query  121  TCCTTGGATGAAAATCACAAGGAAGCGAATGAAGAGGAGGGAGCGAATGAAACGATGGGA  180
            |||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct  175  TCCTCGGATAAAAATCACAATGAAGCGAATGAAGAGGAGGGAGCGAATGAAACGGTGGGA  234

Query  181  GTGAATGAACAAGAGGGAGCGAATGAAA  208
            | ||||||| |||| |||||||||||||
Sbjct  235  GCGAATGAAGAAGATGGAGCGAATGAAA  262



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7828593505


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5