BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18950.1
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906811 jgi|Araly1|906811|Al_scaffold_0003_3939 1989 0.0
> Ahg906811 jgi|Araly1|906811|Al_scaffold_0003_3939
Length=1182
Score = 1989 bits (1077), Expect = 0.0
Identities = 1148/1183 (97%), Gaps = 2/1183 (0%)
Strand=Plus/Plus
Query 150 ATGGAGTCTCTGCTCTCTAGTTCTTCTCTTGTTTCCGCTGCTGGTGGGTTTTGTTGGAAG 209
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGAGTCGCTGCTCTCTAGTTCTTCTCTTGTTTCCGCTGCTGGTGGGTTTTGTTGGAGG 60
Query 210 AAGCAGAATCTAAAGCTCCACTCTTTATCAGAAATCCGAGTTCTGCGTTGTGATTCGAGT 269
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCAGAATCTAAAGCTCCAATCTTTATCAGAAATCCGAGTTCTGCGTTGTGATTCGAGT 120
Query 270 AAAGTTGTCGCAAAACCGAAGTTTAGGAACAATCTTGTTAGGCCTGATGGTCAAGGATCT 329
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 121 AAAGTTGTCGCAAAACCGAAGTTTAGGAACAATCTTGTTAGGCTTGATGGTCAAGAATCT 180
Query 330 TCATTGTTGTTGTATCCAAAACATAAGTCGAGATTTCGGGTTAATGCCACTGCGGGTCAG 389
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCATTGTTGTTGTATCCGAAATATAAGTCGAGATTTCGGGTTAATGCCACTGCGGGTCAG 240
Query 390 CCTGAGGCTTTCGACTC-GAATAGCAAACAGAAGTCTTTTAGAGACTCGTTAGATGCGTT 448
|| ||||||||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 CCCGAGGCTTTCGA-TCCGAATAGCAAACATAAGTCTTTTAGAGACTCGTTAGATGCGTT 299
Query 449 TTACAGGTTTTCTAGGCCTCATACAGTTATTGGCACAGTGCTTAGCATTTTATCTGTATC 508
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TTACAGGTTTTCTAGGCCTCATACAGTTATCGGCACAGTGCTTAGCATTTTATCTGTATC 359
Query 509 TTTCTTAGCAGTAGAGAAGGTTTCTGATATATCTCCTTTACTTTTCACTGGCATCTTGGA 568
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 360 TTTCTTAGCAGTAGAGAAGGTTTCTGATATATCTCCATTACTTTTTACTGGCATCTTGGA 419
Query 569 GGCTGTTGTTGCAGCTCTCATGATGAACATTTACATAGTTGGGCTAAATCAGTTGTCTGA 628
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 420 GGCTGTTGTTGCAGCTCTCATGATGAACATATACATAGTTGGGCTAAATCAGCTGTCTGA 479
Query 629 TGTTGAAATAGATAAGGTTAACAAGCCCTATCTTCCATTGGCATCAGGAGAATATTCTGT 688
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 480 TGTTGAAATAGATAAGGTCAACAAGCCATATCTTCCATTGGCATCAGGGGAATATTCTGT 539
Query 689 TAACACCGGCATTGCAATAGTAGCTTCCTTCTCCATCATGAGTTTCTGGCTTGGGTGGAT 748
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TAACACCGGCATTGCAATAGTAGCTTCCTTCTCCATCATGAGTTTCTGGCTCGGGTGGAT 599
Query 749 TGTTGGTTCATGGCCATTGTTCTGGGCTCTTTTTGTGAGTTTCATGCTCGGTACTGCATA 808
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 TGTTGGTTCATGGCCATTGTTCTGGGCTCTTTTCGTGAGTTTCATGCTCGGTACTGCATA 659
Query 809 CTCTATCAATTTGCCACTTTTACGGTGGAAAAGATTTGCATTGGTTGCAGCAATGTGTAT 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 CTCTATCAATTTGCCACTTTTACGGTGGAAAAGATTTGCATTGGTTGCAGCAATTTGTAT 719
Query 869 CCTCGCTGTCCGAGCTATTATTGTTCAAATCGCCTTTTATCTACATATTCAGACACATGT 928
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 720 CCTCGCTGTCCGAGCTATTATTGTTCAAATCGCCTTTTATCTCCATATTCAGACCCATGT 779
Query 929 GTTTGGAAGACCAATCTTGTTCACTAGGCCTCTTATTTTCGCCACTGCGTTTATGAGCTT 988
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 GTTTGGAAGACCAATCTTGTTCACGAGGCCTCTTATTTTCGCCACTGCGTTTATGAGCTT 839
Query 989 TTTCTCTGTCGTTATTGCATTGTTTAAGGATATACCTGATATCGAAGGGGATAAGATATT 1048
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 TTTCTCTGTCGTTATCGCATTGTTTAAGGATATACCTGATATTGAAGGGGATAAGATATT 899
Query 1049 CGGAATCCGATCATTCTCTGTAACTCTGGGTCAGAAACGGGTGTTTTGGACATGTGTTAC 1108
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 900 CGGGATCCGGTCATTCTCTGTAACTCTGGGTCAGAAACGGGTGTTTTGGACATGTATTTC 959
Query 1109 ACTACTTCAAATGGCTTACGCTGTTGCAATTCTAGTTGGAGCCACATCTCCATTCATATG 1168
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 960 ACTACTTCAAATGGCTTACGCTGTTGCGATTCTTGTTGGAGCCACATCTCCATTCATATG 1019
Query 1169 GAGCAAAGTCATCTCGGTTGTGGGTCATGTTATACTCGCAACAACTTTGTGGGCTCGAGC 1228
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 GAGCAAAGTCATCTCGGTTGTGGGTCATGTTATACTCGCAACAACTTTGTGGACTCGAGC 1079
Query 1229 TAAGTCCGTTGATCTGAGTAGCAAAACCGAAATAACTTCATGTTATATGTTCATATGGAA 1288
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 TAAGTCCGTTGATCTGAGTAGCAAAACCGAAATAACTTCATGTTATATGTTCATTTGGAA 1139
Query 1289 GCTCTTTTATGCAGAGTACTTGCTGTTACCTTTTTTGAAGTGA 1331
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GCTCTTTTATGCAGAGTACTTGCTGTTACCTTTTTTGAAGTGA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65553311645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5