BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18960.1
Length=3431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480836 jgi|Araly1|480836|fgenesh2_kg.3__3537__AT2G18960.1 5513 0.0
Ahg951055 jgi|Araly1|951055|scaffold_802942.1 1003 0.0
> Ahg480836 jgi|Araly1|480836|fgenesh2_kg.3__3537__AT2G18960.1
Length=3377
Score = 5513 bits (2985), Expect = 0.0
Identities = 3210/3316 (97%), Gaps = 26/3316 (1%)
Strand=Plus/Plus
Query 1 CAACCATTGATGATCACCAAATCATAATCAACGGTCGAAATG--AATGAAAAATAAAAGT 58
||||||||||||||||||||||||||||||||||| |||||| ||| ||||| ||||||
Sbjct 1 CAACCATTGATGATCACCAAATCATAATCAACGGTGGAAATGAAAAT-AAAAAAAAAAGT 59
Query 59 CTGAAACGGTGGAGAGTTTCGTCGTTTTGAGTGGTTATAAAAAGAGAAGGCGTATATCTC 118
|| ||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||
Sbjct 60 CTAAAACGGTGGAGAGTTTCGTCGTTTTAAGTGGTTATAAAAGGAGGAGGCG--TATCTC 117
Query 119 CTCTGCAACAGAAGCTCGCTTtctctctctctctctcgtgtgtgtgtgtgtgATCGAGTG 178
|| |||||||||||||||| | | |||||||||||| || |||||||||||||||||
Sbjct 118 CTTTGCAACAGAAGCTCGC--T-T-TCTCTCTCTCTC---TG-GTGTGTGTGATCGAGTG 169
Query 179 GTGAAACGACAGAGAGGGGCGTCGTTTTGTTGATTTCTTCTGGGTGAAGATGTCAGGTCT 238
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GTGAAACGACAGAGAGAGACGTCGTTTTGTTGATTTCTTCTGGGTGAAGATGTCAGGTCT 229
Query 239 CGAAGATATCAAGAACGAGACCGTTGATCTGGAAAAAATTCCGATTGAGGAAGTTTTCCA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CGAAGATATCAAGAACGAGACCGTTGATCTGGAAAAAATTCCGATTGAGGAAGTTTTCCA 289
Query 299 GCAG-CTAAAATGTACAAGGGAAGGATTGACAACGCAGGAAGGGGAAGACAGGATTGTGA 357
| || |||||||||||||||||||||||||| ||||||||||||||||| |||||| |
Sbjct 290 G-AGTCTAAAATGTACAAGGGAAGGATTGACGACGCAGGAAGGGGAAGAGAGGATTCAGC 348
Query 358 TATTTGGCCCCAACAAGCTCGAAGAGAAGAAGGAAAGCAAAATTCTGAAGTTTCTGGGGT 417
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TTTTTGGCCCCAACAAGCTCGAAGAGAAGAAGGAAAGCAAAATTCTGAAGTTTCTGGGGT 408
Query 418 TCATGTGGAATCCGCTTTCATGGGTTATGGAAGCTGCAGCTCTCATGGCCATTGCTTTGG 477
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 409 TCATGTGGAATCCGCTTTCATGGGTCATGGAAGCTGCAGCTATCATGGCCATTGCTTTGG 468
Query 478 CTAATGGTGATAATCGACCTCCGGATTGGCAAGATTTTGTGGGTATTATCTGTCTGCTTG 537
||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 469 CTAATGGTGATGGTAGACCTCCGGATTGGCAAGATTTTGTGGGTATCATCTGTCTGCTTG 528
Query 538 TTATCAACTCCACAATCAGTTTCATTGAAGAAAACAACGCCGGAAATGCTGCAGCTGCTC 597
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 529 TTATCAACTCCACAATCAGTTTCATTGAAGAAAACAATGCCGGAAATGCTGCAGCTGCTC 588
Query 598 TCATGGCTGGTCTTGCTCCTAAAACCAAGGTTCTTAGGGATGGAAAATGGAGTGAACAAG 657
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TAATGGCTGGTCTTGCTCCTAAAACCAAGGTTCTTAGGGATGGAAAATGGAGTGAACAAG 648
Query 658 AGGCTGCTATCCTTGTCCCAGGTGATATTGTTAGCATTAAACTTGGAGACATTATCCCAG 717
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AAGCTGCTATCCTTGTCCCAGGTGATATTGTTAGCATTAAACTTGGAGACATTATCCCAG 708
Query 718 CCGATGCCCGTCTTCTTGAAGGAGATCCTTTAAAGGTTGATCAGTCTGCTCTAACTGGAG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CCGATGCCCGTCTTCTTGAAGGAGATCCTTTAAAGGTTGATCAGTCTGCTCTAACTGGAG 768
Query 778 AGTCCCTTCCTGTGACCAAGCACCCTGGTCAAGAAGTTTTCTCTGGTTCAACTTGTAAAC 837
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGTCCCTTCCTGTAACCAAGCACCCTGGTCAAGAAGTTTTCTCTGGTTCAACTTGTAAAC 828
Query 838 AAGGAGAAATCGAAGCGGTTGTTATAGCCACTGGAGTTCACACCTTCTTTGGTAAAGCTG 897
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 829 AAGGAGAAATCGAAGCGGTTGTTATAGCCACAGGAGTTCACACCTTCTTCGGTAAAGCTG 888
Query 898 CTCACCTTGTGGACAGCACTAACCAAGTTGGGCACTTCCAGAAAGTTCTTACATCCATTG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTCACCTTGTGGACAGCACTAACCAAGTTGGGCACTTCCAGAAAGTTCTTACATCCATTG 948
Query 958 GAAACTTCTGTATCTGTTCTATTGCTATTGGTATAGCGATTGAAATAGTCGTCATGTACC 1017
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 949 GAAACTTCTGTATCTGTTCTATTGCTATTGGTATAGTGATTGAAATAATCGTCATGTACC 1008
Query 1018 CTATCCAACACCGAAAGTACAGAGATGGAATTGACAATCTCTTGGTCCTCTTGATCGGTG 1077
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CTATCCAACGCCGAAAGTACAGAGATGGAATTGACAATCTCTTGGTCCTCTTGATCGGTG 1068
Query 1078 GTATCCCCATTGCTATGCCCACGGTCTTGTCTGTGACTATGGCTATCGGGTCTCACAGGT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GTATCCCCATTGCTATGCCCACGGTCTTGTCTGTGACTATGGCTATCGGGTCTCACAGGT 1128
Query 1138 TGTCTCAGCAAGGTGCTATCACCAAACGTATGACAGCCATTGAAGAAATGGCGGGAATGG 1197
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TGTCTCAGCAAGGTGCCATCACCAAACGTATGACAGCCATTGAAGAAATGGCGGGAATGG 1188
Query 1198 ATGTCCTTTGCAGTGACAAAACCGGGACACTAACCCTTAATAAATTGAGTGTGGATAAAA 1257
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1189 ATGTCCTGTGCAGTGACAAAACCGGGACACTAACCCTCAATAAATTGAGTGTGGATAAAA 1248
Query 1258 ACTTGGTTGAGGTTTTCTGCAAGGGTGTGGAGAAAGATCAAGTTCTACTATTTGCAGCTA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ACTTGGTTGAGGTTTTCTGCAAGGGTGTGGAGAAAGATCAAGTTCTACTATTTGCAGCTA 1308
Query 1318 TGGCTTCTAGGGTGGAGAACCAGGACGCTATTGATGCAGCCATGGTTGGAATGCTTGCTG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 TGGCTTCTAGGGTGGAGAACCAGGACGCTATTGATGCAGCCATGGTTGGAATGCTTGCTG 1368
Query 1378 ATCCGAAAGAGGCCCGAGCTGGAATCAGAGAGGTTCACTTCCTTCCATTCAACCCTGTGG 1437
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1369 ATCCGAAAGAGGCCCGAGCTGGAATCAGGGAGGTTCACTTCCTTCCATTCAACCCGGTGG 1428
Query 1438 ATAAGAGAACTGCTTTGACTTACATCGACTCTGATGGTAACTGGCACAGAGTCAGCAAAG 1497
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 ACAAGAGAACTGCTTTGACTTACATCGACTCTGATGGTAACTGGCACAGAGTCAGCAAAG 1488
Query 1498 GTGCTCCCGAGCAGATCCTTGACCTTGCCAATGCCAGGCCTGACCTTAGGAAGAAGGTAC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GTGCTCCCGAGCAGATCCTTGACCTTGCCAATGCCAGGCCTGACCTTAGGAAGAAGGTAC 1548
Query 1558 TCTCTTGTATTGACAAGTACGCTGAGCGCGGTCTTAGGTCGTTGGCAGTAGCTCGTCAGG 1617
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1549 TCTCTTGTATTGACAAGTACGCTGAGCGCGGTCTTAGGTCATTGGCAGTAGCTCGTCAGG 1608
Query 1618 TGGTACCCGAGAAAACAAAAGAAAGCCCAGGTGGACCATGGGAATTTGTTGGCTTGTTGC 1677
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1609 TGGTCCCCGAGAAAACAAAAGAAAGCCCAGGTGGGCCATGGGAATTTGTTGGCTTGTTGC 1668
Query 1678 CTCTTTTTGACCCTCCAAGACACGACAGTGCCGAAACCATTCGTAGGGCGTTGAATCTAG 1737
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 1669 CTCTTTTTGACCCTCCAAGACATGACAGTGCTGAAACCATTCGTAGGGCGTTGAATCTCG 1728
Query 1738 GTGTTAATGTGAAGATGATCACTGGTGATCAACTTGCTATTGGTAAGGAAACCGGTCGCA 1797
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 GTGTTAATGTTAAGATGATCACTGGTGATCAACTTGCTATTGGTAAGGAAACCGGTCGCA 1788
Query 1798 GGCTTGGAATGGGAACCAATATGTATCCATCTGCGGCTCTTCTCGGTACCGACAAGGACT 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 GGCTTGGAATGGGAACCAATATGTATCCATCTGCGGCTCTTCTCGGTACCGACAAGGACT 1848
Query 1858 CGAACATTGCATCCATCCCTGTTGAGGAGTTGATCGAGAAGGCTGATGGGTTTGCCGGCG 1917
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1849 CGAACATTGCATCCATCCCTGTTGAGGAGTTGATTGAAAAGGCTGATGGGTTTGCCGGCG 1908
Query 1918 TCTTTCCAGAGCACAAATATGAAATTGTGAAAAAGCTGCAGGAGAGGAAGCACATTGTTG 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 TCTTTCCAGAGCACAAATATGAAATTGTGAAAAAGCTGCAGGAGAGGAAGCACATTGTTG 1968
Query 1978 GTATGACCGGTGATGGTGTTAATGATGCACCCGCTTTGAAGAAAGCAGATATCGGTATTG 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GTATGACCGGTGATGGTGTTAATGATGCACCCGCTTTGAAGAAAGCAGATATCGGTATTG 2028
Query 2038 CTGTGGCCGATGCTACAGATGCTGCTCGTGGTGCTTCAGATATCGTCCTCACGGAACCTG 2097
||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||
Sbjct 2029 CTGTGGCCGATGCTACAGATGCTGCTCGTGGGGCTTCCGATATCGTTCTCACAGAACCTG 2088
Query 2098 GGCTGAGTGTCATCATCAGTGCCGTTCTCACTAGCAGAGCTATCTTCCAGAGAATGAAGA 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2089 GGCTGAGTGTCATCATCAGTGCCGTTCTCACTAGCAGAGCTATCTTCCAGAGAATGAAGA 2148
Query 2158 ACTACACCATTTATGCAGTCTCAATCACAATCCGTATTGTGTTTGGTTTCATGCTTATTG 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2149 ACTACACCATTTATGCAGTCTCAATCACAATCCGTATTGTGTTTGGTTTCATGCTTATTG 2208
Query 2218 CTTTGATATGGGAATTTGACTTCTCAGCGTTCATGGTTCTGATTATTGCCATCCTTAATG 2277
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2209 CTCTGATATGGGAATTTGACTTCTCGGCATTCATGGTTCTGATTATTGCCATCCTTAATG 2268
Query 2278 ATGGTACTATCATGACAATCTCAAAGGACAGAGTCAAGCCATCTCCCACACCTGATAGCT 2337
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2269 ACGGTACTATCATGACAATCTCAAAGGACAGAGTCAAGCCATCTCCCACACCTGATAGCT 2328
Query 2338 GGAAGCTCAAAGAAATTTTCGCCACTGGAATTGTGCTGGGAGGCTACCAAGCCATTATGA 2397
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2329 GGAAGCTCAAAGAAATTTTCGCCACTGGAATTGTGCTGGGAGGCTATCAAGCCATTATGA 2388
Query 2398 GTGTTATTTTCTTCTGGGCTGCTCACAAGACCGACTTTTTCTCGGACAAGTTCGGTGTGA 2457
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2389 GTGTTATTTTCTTCTGGGCTGCTCACAAGACTGACTTTTTCTCGGACAAGTTTGGTGTGA 2448
Query 2458 GGTCAATCAGGGACAATAACGATGAACTAATGGGTGCTGTGTATCTACAAGTTAGTATCA 2517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2449 GGTCAATCAGGGACAATAACGATGAACTAATGGGTGCTGTGTATCTACAAGTTAGTATCA 2508
Query 2518 TCAGTCAAGCTCTAATCTTTGTCACCAGGTCAAGGAGTTGGTCATTTGTCGAACGTCCTG 2577
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2509 TCAGTCAAGCTCTAATCTTTGTCACCAGGTCAAGGAGTTGGTCATTTGTTGAACGTCCTG 2568
Query 2578 GGGCGCTTCTGATGATTGCATTCGTCATTGCACAACTGGTTGCAACTTTGATCGCAGTGT 2637
|||| ||||||||| |||||||||||||||||||||||||||| || ||||| || || |
Sbjct 2569 GGGCACTTCTGATGGTTGCATTCGTCATTGCACAACTGGTTGCGACATTGATTGCTGTCT 2628
Query 2638 ATGCCGACTGGACATTTGCAAAGGTGAAGGGTATCGGTTGGGGATGGGCAGGTGTGATTT 2697
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2629 ATGCCGACTGGACATTTGCAAAGGTGAAGGGTATCGGTTGGGGATGGGCTGGTGTGATTT 2688
Query 2698 GGATTTACAGTATCGTAACATACTTCCCACAGGACATTTTGAAGTTTGCCATTCGGTATA 2757
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2689 GGATTTACAGTATCGTAACATACTTCCCACAGGACATTTTGAAGTTTGCCATTCGATATA 2748
Query 2758 TCTTGAGTGGAAAGGCTTGGGCCAGCTTGTTTGACAACAGGACCGCTTTCACAACCAAGA 2817
|||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 2749 TCTTGAGTGGAAAGGCTTGGACCAGCTTGTTTGACAACAGGACTGCTTTCACGACCAAGA 2808
Query 2818 AAGATTACGGTATTGGAGAAAGAGAAGCTCAATGGGCACAAGCTCAAAGGACATTGCACG 2877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2809 AAGATTACGGTATTGGAGAAAGAGAAGCTCAATGGGCACAAGCTCAAAGGACATTGCACG 2868
Query 2878 GTCTGCAGCCAAAAGAAGATGTTAATATCTTCCCAGAGAAAGGAAGTTACAGAGAGCTGT 2937
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2869 GTCTGCAGCCAAAAGAAGATGTTAACATCTTCCCAGAAAAAGGAAGTTACAGAGAGCTGT 2928
Query 2938 CTGAGATCGCAGAGCAAGCCAAGAGAAGGGCCGAGATAGCTAGGCTTAGGGAGCTTCACA 2997
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2929 CTGAGATCGCAGAGCAAGCCAAGAGAAGGGCTGAGATAGCTAGGCTTAGGGAGCTTCACA 2988
Query 2998 CATTGAAGGGACATGTGGAATCAGTCGCAAAGCTAAAGGGATTGGACATTGATACAGCAG 3057
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2989 CACTGAAGGGACATGTGGAATCAGTCGCAAAGCTAAAGGGATTGGACATTGATACAGCAG 3048
Query 3058 GACATCACTACACTGTGTAGTTGGAGTTGCACAACAACACAAACATTTACCGAAAACCAA 3117
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 3049 GACATCACTACACTGTGTAGTTGCAGTTGCACAACAACACAAACATTTACCGA---CC-- 3103
Query 3118 CCCCATCATGACTCATCTTTTGTTTTGTCTTCACAAATCTCTCTTTAAAAGTCATTACAG 3177
|| |||||||||| |||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 3104 CC--ATCATGACTCTTCTTTTGTTTTGTCATCACAAATCTCTCTTTTAAAGTCATTACAG 3161
Query 3178 TAGAGGGAAGAGAACTCTTGTGTATTGCCATAACTCTTCCAAAACTCttttttcttt-tt 3236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 3162 TAGAGGGAAGAGAACTCTTGTGTATTGCCATAACTCTTCCAAAACTCTTTTTTTTTTCTT 3221
Query 3237 --GTTATTGTTAGTCATTGTTCTTAAAACTCCTACTCGATATGAGCTTTGCAAATTTGCC 3294
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 3222 CTGTTATTGTTAGTCATTGTTCT-AAAACTTGTACTCGATATGAGCTTTGCAAATTTGCC 3280
Query 3295 TTTGAAGAAACAAGGC 3310
||||||||||||||||
Sbjct 3281 TTTGAAGAAACAAGGC 3296
> Ahg951055 jgi|Araly1|951055|scaffold_802942.1
Length=2914
Score = 1003 bits (543), Expect = 0.0
Identities = 2086/2800 (75%), Gaps = 229/2800 (8%)
Strand=Plus/Plus
Query 369 AACAAGCTCGAAGAGAAGAAGGAAAGCAAAATTC-TGAAGTTTCTGGGGTTCATGTGGAA 427
|||||||||||||||||||||||||||||| ||| |||| ||||| || |||||||||||
Sbjct 177 AACAAGCTCGAAGAGAAGAAGGAAAGCAAA-TTCCTGAAATTTCTTGGTTTCATGTGGAA 235
Query 428 TCCGCTTTCATGGGTTATGGAAGCTGCAGCTCTCATGGCCATTGCT-TTGGCTAATGGTG 486
||| ||||| ||||||||||||||||| ||| ||||||| |||| | ||| |||| || |
Sbjct 236 TCCTCTTTCTTGGGTTATGGAAGCTGCTGCTATCATGGCTATTGTTCTTG-CTAACGGAG 294
Query 487 -AT--AATCGACCTCCGGATTGGCAAGATTTTGTGGGTATTATCTG-TCTGCTTGTTATC 542
| || | ||||| ||||||||||| ||||| |||||||| | ||| ||||| |||
Sbjct 295 GAGGGAA--G-CCTCCTGATTGGCAAGACTTTGTTGGTATTAT-TACTCTTCTTGTGATC 350
Query 543 AACTCCACAATCAGTTTCATTGAAGAAAACAACGCCGGAAATGCTGCAGCTGCTCTCATG 602
|| ||||| ||||||||||| || || |||||||| || |||||||| |||||||| |||
Sbjct 351 AATTCCACCATCAGTTTCATAGAGGAGAACAACGCAGGGAATGCTGCTGCTGCTCTTATG 410
Query 603 GCTGGTCTTGCTCCTAAAACCAAGGTTCTTAGGGATGGAAAATGGAGTGAACAAGAGGCT 662
|| ||||||| || ||| | ||||||||| | ||||||| ||| |||| || || |||
Sbjct 411 GCACGTCTTGCCCCCAAAGCAAAGGTTCTTCGAGATGGAAGGTGGGGTGAGCAGGATGCT 470
Query 663 GCTATCCTTGTCCCAGGTGATATTGTTAGCATTAAACTTGGAGACATTATCCCAGCCGAT 722
|| || ||||| || ||||| || || ||||| || ||||| || ||| | ||||| |||
Sbjct 471 GCAATTCTTGTTCCTGGTGACATAGTCAGCATCAAGCTTGGGGATATTGTTCCAGCTGAT 530
Query 723 GCCCGTCTTCTTGAAGGAGATCCT-TTAAAGGTTGATCAGTCTGCTCTAACTGGAGAGTC 781
|| || ||||| || || ||||| |||| | | ||||||||| |||| ||||| || ||
Sbjct 531 GCTCGCCTTCTCGAGGGTGATCCCCTTAA-GATCGATCAGTCTTCTCTTACTGGTGAATC 589
Query 782 CCTTCCTGTGACCAA-GCACCCTGGTCAAGAAGT-T-TTCTCTGGTTCAACTTGTAAACA 838
|| || || ||||| | || || | | || | ||| | || || ||||| |||||
Sbjct 590 TCTCCCAGTAACCAAAGGTCCAGGGG-ATGGTGTGTATTC-C-GGCTCCACTTGCAAACA 646
Query 839 AGGAGAAATCGAAGCGGTTGTTATAGCCACTGGAGTTCACACCTTCTTTGGTAAAG-CTG 897
||||| | ||||| ||||| || || || ||||| || ||||||||||| |||| | |
Sbjct 647 GGGAGAGCTTGAAGCAGTTGTGATCGCAACGGGAGTCCATACCTTCTTTGG-AAAGGCCG 705
Query 898 CTCACCTTGTGGACA-GCACTAACCAAGTTGGGCACTTCCAGAAAGTTCTTA-CAT-CCA 954
| || ||||| || | | || ||||||||||| ||||| || | || | ||| | | |||
Sbjct 706 CACATCTTGTTGATACG-ACCAACCAAGTTGGCCACTTTCA-ACAGGTGTTAAC-TGCCA 762
Query 955 TTGGAAACTTCTGTATCTGTTCTATTGCTATTGGT-ATAGCGA-TTGAAATAGTCGTCAT 1012
|||| || ||||| ||||| |||||||| | ||| || | | |||| || ||||| ||
Sbjct 763 TTGGGAATTTCTGCATCTGCTCTATTGC-AGTGGGGAT-GATAATTGAGATTGTCGTTAT 820
Query 1013 GTA-CCCTATCCAACACCGAA-AGTA-CAGAGATGGAATTGACAATCT-CTTGGTCCT-C 1067
||| ||| || ||||||||| | || | | ||||||||| || || |||| | || |
Sbjct 821 GTATCCC-ATTCAACACCGAGCA-TATC-GTCCTGGAATTGATAACCTTCTTG-TGCTTC 876
Query 1068 TTGATCGGTGGTATCCCCATTGCTATGCCCACGGT-CTTGTCTGTGACTATGGCTATCGG 1126
| || || |||||||| ||||||||||| || || || |||||||| ||||| || ||
Sbjct 877 TC-ATTGGCGGTATCCCAATTGCTATGCCTACAGTTCTC-TCTGTGACCATGGCCATTGG 934
Query 1127 GTCTCACAGGTTGTCTCAGCAAGGTGCTATCACCAA-ACGTATGACAGCCATTGAAGAAA 1185
|| || ||||| |||||||| || || || ||||| | | |||||||| ||||| ||||
Sbjct 935 CTCGCATAGGTTATCTCAGCAGGGAGCAATAACCAAGAGG-ATGACAGCGATTGAGGAAA 993
Query 1186 TGGCGGGAATGGATGTCCTTTGCAGTGACAAAACCGGGACACTAACCCTT-AATAAA-TT 1243
|||| || |||||||| |||||||| ||||||||||| || |||| || |||||| ||
Sbjct 994 TGGCTGGCATGGATGTGCTTTGCAGCGACAAAACCGGAACTTTAACA-TTGAATAAACTT 1052
Query 1244 GAGTGTGGATAAAAA-CTTGGTTGAGGTTTTCT-GCAAGGGTGTGGA-GAAAGAT-CA-- 1297
| ||| || ||||| ||| ||||||||||| | |||| ||||| | | ||| ||
Sbjct 1053 -ACTGTTGACAAAAATCTTA-TTGAGGTTTTCACGAAAGGA-GTGGATGCA-GATACAGT 1108
Query 1298 AGTTCTACTATTTGCAGCT-ATGGCTTCTAGGGTGGAGAACCAGGACGCTATTGATGCAG 1356
|||||| || |||||| | | || |||| |||| ||||| || || |||||||| |
Sbjct 1109 AGTTCTG--ATG-GCAGCTCAAGCCT-CTAGACTGGAAAACCAAGATGCCATTGATGCTG 1164
Query 1357 CCATGGTTGGAATGCTTGCTGATCCGAAAGAGGCCCGAGCTGGAAT-CAGAGAGGTTCAC 1415
| || ||||| ||||||||||| || |||||||| |||||||| | | |||||||||||
Sbjct 1165 CTATAGTTGGGATGCTTGCTGACCCTAAAGAGGCACGAGCTGGTGTTC-GAGAGGTTCAC 1223
Query 1416 TTCCTTCCATTCAA-CCCTGTGGATAAGAGAACTGCT-TTGACTTACATCGACTCTGATG 1473
|| ||||||||||| ||| || ||||||| || ||| || || || || ||| |||||
Sbjct 1224 TTTCTTCCATTCAATCCCACTG-ATAAGAGGACGGCTCTT-ACATATATTGACAGTGATG 1281
Query 1474 GTAAC-TGGCACAGAGTCAGCAAAGGTGCTCCCGAGCAGATCCTTGACCTTGC-CA-A-T 1529
|||| || || || |||||||||||||| || ||||| ||||| | ||||| || | |
Sbjct 1282 GTAAAATG-CATAGGGTCAGCAAAGGTGCACCTGAGCAAATCCTAAATCTTGCGCACAAT 1340
Query 1530 GCCAGGCCTGACCTT-AG-GAAGAAGGT-ACTCTCTTGTATT-GACAAGTACGCTGAGCG 1585
|| | || || || | ||| | | | | || ||| | ||||||| |||||| ||
Sbjct 1341 AA-AG-CA-GAGATTGAGCGGAGA-GTTCA-TG-CT-GTAATAGACAAGTTCGCTGAACG 1393
Query 1586 CGGTCTTAGG-TCG-TTGGCAGTAGC-T-CGTCAGGTGGTACCCGA-GAAAACAAAAGAA 1640
||| ||| | || ||| | || || | | |||| || || || | | | || |||
Sbjct 1394 GGGT-TTACGATCTCTTGCC-GTGGCATAC--CAGGAAGTTCCGGAAGGGA-CGAAGGAA 1448
Query 1641 AGCCCAGGTGGACCATGGGAATTTGTTGG-CTTGTTGCCTCTTTTTGACCCTCCAAGACA 1699
|| | || || || ||| ||||| | || || | |||||||||||||||| || || ||
Sbjct 1449 AGTGCTGGAGGCCCTTGGCAATTTATGGGTCT-GATGCCTCTTTTTGACCCACCTAGGCA 1507
Query 1700 CGACAGTGCCGAAACCATTCGTAGGGCGTTGAATCTAGGTGTTAATGTGAAGATGATCAC 1759
||||||||||| || ||| | ||||| || ||||| || || ||||| || ||||||||
Sbjct 1508 TGACAGTGCCGAGACAATTAGAAGGGCTTTAAATCTTGGGGTGAATGTCAAAATGATCAC 1567
Query 1760 TGGTGATCAACTTG-CTATTGGTAAGGAAACCGGTCGCAGGCTT-GGAATGGGAACCAAT 1817
|| ||||| ||| | || || || || || || ||| | || || |||||||||||
Sbjct 1568 AGGGGATCAG-TTGGCAATAGGAAAAGAGACTGGACGCCGT-TTAGGGATGGGAACCAAC 1625
Query 1818 ATGTATCCATC-TGCGGCTCTT-CTCGGTACCG-ACAAGGACTCGAA-C-ATTGCAT-CC 1871
||||| || || | | ||| || ||||| || | ||||||| | || | || | | ||
Sbjct 1626 ATGTACCCTTCAT-CTGCT-TTACTCGG-ACAGCACAAGGA-T-GAGTCTATAGG-TGCC 1679
Query 1872 AT-CCCTGTTGAGGAGT-TGATCGAGAAGGCTGATGGGTTTGCCGGCGTCTTTCCAGAGC 1929
| ||| | || || | | || || ||||| ||||| ||||| ||||| ||||| ||||
Sbjct 1680 TTACCCA-TCGATGA-TCTCATAGAAAAGGCCGATGGCTTTGCTGGCGTTTTTCCTGAGC 1737
Query 1930 ACAAATATGAAATTGTGAAAA-AGCTGCAGGAGAGGAAGCACATT-GTTGGTATGACCGG 1987
| |||||||| || || || | || || | ||||||||| ||| || || ||||| ||
Sbjct 1738 ATAAATATGAGATAGTTAAGCGA-CTACAAGCGAGGAAGCATATTTGT-GGAATGACAGG 1795
Query 1988 TGATGGTGTTAATGATGCACCCGCT-TTGAAGAAAG-CAGATATCGGTATTGCTGTGGCC 2045
|||||| || |||||||| || ||| || || |||| | || || || ||||| || ||
Sbjct 1796 TGATGGAGTAAATGATGCGCCTGCTCTT-AA-AAAGGCTGACATTGGCATTGCAGTTGCT 1853
Query 2046 GATGCTACAGATGCTGCTCGTGGTGCTTCAGATATCGTCCTCACGGAACCTGGGCTGAGT 2105
||||| || ||||| || ||| |||||||||| ||||| || || |||||||| || |||
Sbjct 1854 GATGCAACTGATGCAGCACGTAGTGCTTCAGACATCGTTCTTACTGAACCTGGTCTTAGT 1913
Query 2106 GTCATCATCAGTGCCGTTCTC-ACTAG-CAGAGCTATCTTCCAGAGAATGAAGAACTACA 2163
|| |||||||| || || || || || | | |||||||||||||||||||| || || |
Sbjct 1914 GTTATCATCAGCGCTGT-CTTGACCAGTC-GTGCTATCTTCCAGAGAATGAAAAATTATA 1971
Query 2164 CCATTTATGCAGTCTCAATCACAATCCGTATTGTGTTTGGTTTCATGCTTATTGCT-TTG 2222
| || ||||| || || ||||| ||||||||||| |||| |||||||| | ||| ||
Sbjct 1972 CAATCTATGCGGTTTCCATCACTATCCGTATTGTCCTTGGCTTCATGCTGCTGGCTCTT- 2030
Query 2223 ATATGGGAA-TTTGACTTCTC-AGCGTTCATGGTTCTGATTATTGCCATCCTTAATGATG 2280
|||||| || |||||||| || | | ||||||||||| || || |||||||| |||||||
Sbjct 2031 ATATGG-AAGTTTGACTT-TCCACCCTTCATGGTTCTTATCATCGCCATCCTGAATGATG 2088
Query 2281 GTACTATCATGACAATCTCAAAGGACAGAGTCAAGCCATCTCCCACA-CCTGATAGCTGG 2339
| || || |||||||| ||||| |||||||| || || || ||| | || |||||||||
Sbjct 2089 GCACAATTATGACAATATCAAAAGACAGAGTGAAACCTTC-CCCTCTTCCAGATAGCTGG 2147
Query 2340 AAGCTCAAAGAAATTTTCGCCACTGGAATTGTGCT-GGGAGGCTACCAAGCC-ATTATGA 2397
|| ||| ||| ||||| || ||||| ||||| | ||||| |||| | | | || ||||
Sbjct 2148 AAACTCTCAGAGATTTTTGCAACTGGCGTTGTGTTTGGGAG-CTAC-ATGGCGATGATGA 2205
Query 2398 GTGTTAT-TTTCTTCTGGGCTGC-TCACAAGACCGACTTTTTCTCGGACAAGTTCGGTGT 2455
||||| ||| ||||||||||| | | || |||||||| ||| || | || | | |
Sbjct 2206 CAGTTATATTT-TTCTGGGCTGCAT-ATAAAACCGACTTCTTCCCG--C--GTACTTT-T 2258
Query 2456 G-AGGT-CAATCAG-G-GACAATA--AC--GATGAACTAATGGGTGCT-G--T--G---T 2499
| || | ||| | | || || | || ||||| | || ||| | | | |
Sbjct 2259 GGAGTTTCAACCCTTGAGAAAACAGCACATGATGATTTCC-GGAAGCTTGCCTCAGCAAT 2317
Query 2500 AT-C-TACAAGTTAGTATCATCAGTCAAGCTCTAATCTTTGTCACCAGGTCAAGGAGTTG 2557
|| | | ||||| || ||||| ||||| || || |||||||| ||| | ||| |||||||
Sbjct 2318 ATACCTGCAAGTCAGCATCATAAGTCAGGCGCTTATCTTTGTGACCCGATCACGGAGTTG 2377
Query 2558 GTCATT-TGTCGAACGTCCTGGG--GCG-CTTCTGATGATTGCATTCGTCATTGCACAAC 2613
||| || ||| |||||||||||| | | ||| |||| | || || || | ||||||
Sbjct 2378 GTC-TTATGTAGAACGTCCTGGGATGTGGCTTGTGAT-A--GCCTTTATCCTCGCACAAT 2433
Query 2614 TGGTTGCAACTTTGATCGCAGTGTATGCCGACT-GGA-CATT--TGCAA-AGGTGAAGGG 2668
|||| || ||| | || ||||||||||| || | ||| | || ||||| || |||||
Sbjct 2434 TGGTGGCTACTCTAATTGCAGTGTATGC-GAATTGGAGCTTTGCTGCAATAG---AAGGG 2489
Query 2669 TATCGGTTGGGGATGGGCAGGTGTGATTTGGATTTACAGTATCGTAA-C-ATACTTCCCA 2726
||||| ||||||||||| || || || ||| |||||| ||||||| | ||| ||||
Sbjct 2490 -ATCGGGTGGGGATGGGCCGGGGTCATCTGGCTTTACAATATCGTATTCTATA-TTCCT- 2546
Query 2727 CAGGACATTTTGAAGTT-T-GCCATTCGGTATATC-TTGAGTGGAA-AGGCTTGGGCCAG 2782
| || || | ||||| | | ||||| ||| | || || |||| || || ||| |
Sbjct 2547 CTTGATATCATCAAGTTCTTG--ATTCGTTATGCCCTT-AGCGGAAGAGCCT-GGG--AT 2600
Query 2783 CTTGTT-T-GA-CAACAGGACCGCTTTCACAAC-CAAGAAAGATTACGGTATTGGAGAAA 2838
|||||| | || ||| ||| || ||||| | || ||| |||| ||| | | | |||
Sbjct 2601 CTTGTTATCGAACAA-AGGGTTGCATTCACGAGGCA-GAAGGATTTCGGGAAAGAACAAA 2658
Query 2839 GAGAAGCT-CAATGGGCACAAGCTCAAAGGACAT-TGCACGGTCTGCA-GCCAAAAGAAG 2895
| || ||| |||||||| || || || || || | ||||||| ||||| || | |||
Sbjct 2659 GGGA-GCTACAATGGGCGCACGCACAGAGAAC-TCTGCACGGCCTGCAAGC-ACCAGA-- 2713
Query 2896 ATGTTAATATCTTCCCAGAGA-AAGGAAGTTACAGA-GAGCTGTCTGAGATCGCAGA-GC 2952
|| ||| || ||||||||| || | || || | ||||| || | || || || |
Sbjct 2714 -TGCTAAGATGTTCCCAGAGCGAACCCATTT-CA-ACGAGCTTTCCCAAATGGCTGAAG- 2769
Query 2953 AAGCCAAGAGAAGGGCCGAGATAGCTAGGCTTA-GGGAGCTTCACACATTGAAGGGACAT 3011
|||| |||||||| || || || || ||| || |||||||||||||| | ||||| |||
Sbjct 2770 AAGCTAAGAGAAGAGCTGAAATCGCCAGG-TTGCGGGAGCTTCACACACTCAAGGGTCAT 2828
Query 3012 GTGGAATCAGTCGCAA-AGCTAAAGGGAT-TGGACATTGA 3049
|| ||||| || | | | |||||||| | | ||||||||
Sbjct 2829 GTTGAATCTGTTGTGAGA-CTAAAGGG-TCTCGACATTGA 2866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129547978492
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5