BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18969.1 Length=528 Score E Sequences producing significant alignments: (Bits) Value Ahg343566 jgi|Araly1|343566|fgenesh1_pg.C_scaffold_3003329 695 0.0 > Ahg343566 jgi|Araly1|343566|fgenesh1_pg.C_scaffold_3003329 Length=501 Score = 695 bits (376), Expect = 0.0 Identities = 440/470 (94%), Gaps = 7/470 (1%) Strand=Plus/Plus Query 1 ATGGAGAGGCAAATTATAAACAAGAGAAAGCGAGTCTTTTCTCTCCAACCAAACAAGAAC 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAGGCAAATTATAAACAAGAGAAAACGAGTCTTTTCTCTCCAACCAAACAAGAAC 60 Query 61 CCTAAGGCAG-TTTTCGCAAGAAGATACGTGAGTCACTTGGTTCCAGCTCTTAAAAAGAT 119 ||||| || | | |||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct 61 CCTAATGC-GCTCTTCGCAAGAAGATACGTGAGCCACTTGGTTCCAGCTCTCAAGAAGAT 119 Query 120 CAACATGAACAAATCCTCTTCAAAAACCAACAAACAAAGTTTAGAACAAACCGTGAAACA 179 ||||||||||||||||||||||||||| ||| | | |||||| ||| ||||||||||||| Sbjct 120 CAACATGAACAAATCCTCTTCAAAAACAAACCACCCAAGTTTTGAAAAAACCGTGAAACA 179 Query 180 TGAAGTAGACATGGCTTTCGCATTGTCTGCTCAAGAATTCGCGTGGAGCCGTTTCTTGCA 239 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 180 TGAAGTAGACATGGCTTTCGCCTTGTCTGCTCAAGAATTCGCGTGGAGCCGTTTCTTGCA 239 Query 240 ACAGAAGCTATTATCTTCCCCTT-ATGATGATCCAATTAGCACTAGTAGTTCTCCTTCCG 298 ||| ||||||||||||| || || ||||||||||| | || ||||||||||||||||||| Sbjct 240 ACAAAAGCTATTATCTT-CCGTTCATGATGATCCAGTAAGAACTAGTAGTTCTCCTTCCG 298 Query 299 AGATTCTAGAAAGATCGAGCAAGAGACAAGGTGGAGAAAAACACCAAGACAGCGACgaag 358 |||||||||||||||| ||||||| ||||| |||||||||| |||||||| || ||| | Sbjct 299 AGATTCTAGAAAGATCAAGCAAGAAACAAGTTGGAGAAAAATACCAAGAC--CG-CGACG 355 Query 359 aagaagaaggaggagagatcaagaagagattgaaggaattgcagaagCTTTTGCCAGGTG 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 AAGAAGAAGGAGGAGAGATCAAGAAGAGATTGAAGGAATTGCAGAAGCTTTTGCCAGGTG 415 Query 419 GAGAAGAGATGAACATGGAGGAGATTTTGAGTGAGATTGGAAGCTACATT 468 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 GAGAAGAGATGAACATGGAGGAGATTTTGAGTGAGATTGGAAGCTACATT 465 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19230416856 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5