BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G18969.1

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg343566 jgi|Araly1|343566|fgenesh1_pg.C_scaffold_3003329           695    0.0  


> Ahg343566 jgi|Araly1|343566|fgenesh1_pg.C_scaffold_3003329
Length=501

 Score =  695 bits (376),  Expect = 0.0
 Identities = 440/470 (94%), Gaps = 7/470 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAGGCAAATTATAAACAAGAGAAAGCGAGTCTTTTCTCTCCAACCAAACAAGAAC  60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGAGGCAAATTATAAACAAGAGAAAACGAGTCTTTTCTCTCCAACCAAACAAGAAC  60

Query  61   CCTAAGGCAG-TTTTCGCAAGAAGATACGTGAGTCACTTGGTTCCAGCTCTTAAAAAGAT  119
            ||||| || | | |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct  61   CCTAATGC-GCTCTTCGCAAGAAGATACGTGAGCCACTTGGTTCCAGCTCTCAAGAAGAT  119

Query  120  CAACATGAACAAATCCTCTTCAAAAACCAACAAACAAAGTTTAGAACAAACCGTGAAACA  179
            ||||||||||||||||||||||||||| ||| | | |||||| ||| |||||||||||||
Sbjct  120  CAACATGAACAAATCCTCTTCAAAAACAAACCACCCAAGTTTTGAAAAAACCGTGAAACA  179

Query  180  TGAAGTAGACATGGCTTTCGCATTGTCTGCTCAAGAATTCGCGTGGAGCCGTTTCTTGCA  239
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  180  TGAAGTAGACATGGCTTTCGCCTTGTCTGCTCAAGAATTCGCGTGGAGCCGTTTCTTGCA  239

Query  240  ACAGAAGCTATTATCTTCCCCTT-ATGATGATCCAATTAGCACTAGTAGTTCTCCTTCCG  298
            ||| ||||||||||||| || || ||||||||||| | || |||||||||||||||||||
Sbjct  240  ACAAAAGCTATTATCTT-CCGTTCATGATGATCCAGTAAGAACTAGTAGTTCTCCTTCCG  298

Query  299  AGATTCTAGAAAGATCGAGCAAGAGACAAGGTGGAGAAAAACACCAAGACAGCGACgaag  358
            |||||||||||||||| ||||||| ||||| |||||||||| ||||||||  || ||| |
Sbjct  299  AGATTCTAGAAAGATCAAGCAAGAAACAAGTTGGAGAAAAATACCAAGAC--CG-CGACG  355

Query  359  aagaagaaggaggagagatcaagaagagattgaaggaattgcagaagCTTTTGCCAGGTG  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  356  AAGAAGAAGGAGGAGAGATCAAGAAGAGATTGAAGGAATTGCAGAAGCTTTTGCCAGGTG  415

Query  419  GAGAAGAGATGAACATGGAGGAGATTTTGAGTGAGATTGGAAGCTACATT  468
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  416  GAGAAGAGATGAACATGGAGGAGATTTTGAGTGAGATTGGAAGCTACATT  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19230416856


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5