BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18980.1
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931858 jgi|Araly1|931858|scaffold_304315.1 1561 0.0
Ahg889105 jgi|Araly1|889105|Al_scaffold_0007_1091 725 0.0
> Ahg931858 jgi|Araly1|931858|scaffold_304315.1
Length=1013
Score = 1561 bits (845), Expect = 0.0
Identities = 958/1013 (95%), Gaps = 6/1013 (1%)
Strand=Plus/Plus
Query 3 AAACCTTAACATTCTAAGCCATGAAGAACCAAAGCAGCTTCTCCATTGTTGCTCTTCTTC 62
|||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1 AAACATTAACTTTCTAAGCCATGAAGTACCAAGGCAGCTTCTCCATTGTTGCTCTTTTTC 60
Query 63 TCATTTTCTTTTCCTCATCTGTCTTTGCTCAGCTGCAGACAAATTTTTACCGGAAGTCAT 122
||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 TCATTCTCTTTTCTTCATCTGTCTTTGCTCAGCTACAGACAAATTTTTACCGGAAGTCAT 120
Query 123 GTCCTAACGTGGAAACTATTGTCCGCAATGCCGTCCGCCAAAAGTTCCAGCAGACTTTTG 182
|||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 121 GTCCTAACGTCGAAACTATTGTCCGCAACCCCGTCCGCCAAAAGTTCCAACAGACTTTTG 180
Query 183 TTACGGCTCCGGCCACCCTCCGCCTTTTCTTCCATGATTGCTTCGTCCGTGGATGTGATG 242
|||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 TTACGGCTCCAGCCATCCTCCGCCTTTTCTTCCATGATTGCTTCGTCCGTGGTTGTGATG 240
Query 243 CTTCGATATTGCTGGCATCACCATCTGAGAAGGATCACCCTGATGACAAGTCACTAGCCG 302
|||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 241 CTTCGATATTGCTGGCGTCTCCATCGGAGAAAGATCACCCTGATGACAAGTCACTAGCCG 300
Query 303 GAGACGGGTTTGATACGGTGGCAAAGGCAAAGCAGGCCCTTGATAGGGACCCCAACTGCC 362
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 301 GAGACGGGTTTGATACGGTGGCAAAGGCAAAGCAGGCCGTTGATAGGGATCCCAACTGCC 360
Query 363 GTAACAAAGTCTCATGCGCTGACATTTTGGCTCTCGCCACTCGTGACGTCGTCGTTTTGA 422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 GTAACAAAGTCTCATGCGCTGACATTTTGGCTCTAGCCACTCGTGACGTCGTCGTTTTGA 420
Query 423 CCGGAGGACCGAACTATCCGGTAGAGCTAGGGAGGAGAGACGGCAGACTATCGACAG-TG 481
| || ||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 421 CTGGCGGACCGAACTATCCGGTAGAGCTAGGGAGGAGAGACGGCAGACTATCCAC-GATA 479
Query 482 GCTAGCGTTCAACACAGTCTACCCCAGCCTAGTTTCAAATTGGACCAACTTAACACTATG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTAGCGTTCAACACAGTCTACCCCAGCCTAGTTTCAAATTGGACCAACTTAACACTATG 539
Query 542 TTCGCTCGTCACGGTCTATCCCAAACCGATATGATTGCACTCTCAGGAGCACATACTATA 601
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 TTCGCTCGTCACGGTCTATCCCAAACCGATATGATCGCACTCTCAGGAGCACATACTATC 599
Query 602 GGATTCGCACATTGTGGCAA-GTTTTCGAAA-AGAATTTACAATTTTAGTCCTAAACGTC 659
||||||||||||||||| || |||||| ||| |||||||||||||||||||||||||| |
Sbjct 600 GGATTCGCACATTGTGG-AAGGTTTTC-AAAGAGAATTTACAATTTTAGTCCTAAACGCC 657
Query 660 CAATTGATCCGACTTTGAATATTCGTTACGCCTTACAATTGAGACAAATGTGCCCCATTC 719
| |||||||||||||| |||| || ||||| ||||| |||||||||||||| |||||||
Sbjct 658 CGATTGATCCGACTTTAAATACTCAATACGCGTTACAGTTGAGACAAATGTGTCCCATTC 717
Query 720 GGGTCGACTTGAGGATCGCAATTAACATGGATCCTACTTCTCCAAATACATTTGACAATG 779
|||| ||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 718 GGGTTGACCCGAGGATCGCGATTAATATGGATCCTACTTCTCCAAATACCTTTGACAATG 777
Query 780 CTTATTTCAAAAACCTCCAAAAAGGGATGGGTTTGTTCACGTCAGATCAAGTTTTGTTCT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTTATTTCAAAAACCTCCAAAAAGGGATGGGTTTGTTCACGTCAGATCAAGTTTTGTTCT 837
Query 840 CTGATGAACGATCTAGATCAACTGTCAATTCATTTGCTTCTAGTGAAGCAACTTTTAGAC 899
||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 838 CTGATCAACGGTCTAGATCAACTGTCAATTCATTTGCTTCTAATGAAGCAACTTTTAGAC 897
Query 900 AAGCTTTTATTTCGGCTATAACGAAGTTGGGTCGGGTTGGAGTTAAAACCGGTAACGCGG 959
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 898 AAGCTTTTATTTTGGCTATAACGAAGTTGGGTCGGGTTGGAGTCAAAACCGGTAACGCCG 957
Query 960 GTGAGATAAGACGGGATTGTTCACGTGTTAATTAGTGatttgttgtttctttt 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GTGAGATAAGACGGGATTGTTCACGTGTTAATTAGTGATTTGTTGTTTCTTTT 1010
> Ahg889105 jgi|Araly1|889105|Al_scaffold_0007_1091
Length=978
Score = 725 bits (392), Expect = 0.0
Identities = 791/981 (81%), Gaps = 37/981 (4%)
Strand=Plus/Plus
Query 31 CCAAAGCAGCTTCTCCAT-TGTTGCTCTTCTTCTCATTTTCTTTTCCTCATCTGTCTTTG 89
||||| || ||||||||| | || |||||| | || || || |||| |||| ||||| ||
Sbjct 18 CCAAACCATCTTCTCCATAT-TTTCTCTTC-T-TC-TTCTCCTTTCTTCATGTGTCTCTG 73
Query 90 CTCAGCTGCAGACAAATTTTTACCGGAAGTCATGTCCTAACGTGGAA-ACTATTGTCCGC 148
||||||| | |||| ||| |||| ||| |||||||| ||||| ||| | ||||||||
Sbjct 74 CTCAGCTCCGGACAGGTTTCTACCAGAACTCATGTCCGAACGTCGAAGGC-ATTGTCCGT 132
Query 149 AATGCCGTCCGCCA-AAAGTTCCAGCAGACTTTTGTTACGGCTCCGGCCACCCTCCGCCT 207
|| |||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 133 AACGCCGTCCGTCAGAAA-TTCCAGCAGACTTTTGTTACGGCTCCGGCCACTCTCCGCCT 191
Query 208 TTTCTTCCATGATTGCTTCGTCCGTGGATGTGATGCTTCGATATTGCTGGCATCACCATC 267
|||||||| ||||||||||| || || |||||||| || ||| || | |||||||| ||
Sbjct 192 CTTCTTCCACGATTGCTTCGTTCGGGGGTGTGATGCGTCAATAATGATAGCATCACCGTC 251
Query 268 TGAGA-AGGATCACCCTGATGACAAGTCACTAGCCGGAGACGGGTTTGATACGGTGGCAA 326
|||| || | || || ||||||| |||| | |||||||| || || || ||||||| |
Sbjct 252 GGAGAGAG-ACCATCCAGATGACATGTCATTGGCCGGAGATGGATTCGACACGGTGGTGA 310
Query 327 AGGCAAAGCAGGCCCTTGATAGGGACCCCAACTGCCGTAACAAAGTCTCATGCGCTGACA 386
|||| ||||| ||| ||||||| | ||||||||||| |||||||||||||| |||||||
Sbjct 311 AGGCGAAGCAAGCCGTTGATAGCAATCCCAACTGCCGCAACAAAGTCTCATGTGCTGACA 370
Query 387 TTTTGGCTCTCGCCACTCGTGACGTCGTCGTTTTGACCGGAGGACCGAACTATCCGGTAG 446
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
Sbjct 371 TTTTGGCTCTCGCCACTCGTGAAGTCGTCGTTTTGACCGGAGGACCGAGCTACCCGGTGG 430
Query 447 AGCTAGGGAGGAGAGACGGCAGACTATCGAC--AGTGGCTAGCGTTCAACAC-AGTCTAC 503
|||||||||||||||| |||||| | || || ||| | ||||||||| || | || |
Sbjct 431 AGCTAGGGAGGAGAGATGGCAGAATCTCCACGCAGTC-C-AGCGTTCAAAACCAA-CTGC 487
Query 504 CCCAGCCTAGTTTCAAATTGGACCAACTTAACA-CTATGTTC-GCTCGTCACGGTCTATC 561
| ||||| |||| || | |||| || ||| | ||||| || ||||||||||| ||
Sbjct 488 CTCAGCCCGGTTTTAACCTAAACCAGCTCAACGGC-ATGTTTAGC-CGTCACGGTCTCTC 545
Query 562 CCAAACCGATATGATTGCACTCTCAGGAGCACATACTATAGGATTCGCACATTGTGGCAA 621
|||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 546 TCAAACCGATATGATCGCCCTCTCAGGAGCACACACTATAGGATTTGCACATTGTGGAAA 605
Query 622 GTTTTCGAAA-AGAATTTACAATTTTAGTCCTAAACGTCCAATTGATCCGACT-TTGAAT 679
|| | ||| ||||| ||||||||||| |||| || | || ||||||||| || |||
Sbjct 606 ATTCAC-AAAGAGAATCTACAATTTTAGCCCTAGCCGACGTATCGATCCGACTATT-AAT 663
Query 680 ATTCGTTACGCC-TTACAA-TTGAGACAAATGTGCCCCATTCGG-GTCGACTTGAGGA-T 735
| | | |||| || || || || ||||||||||| || ||| |||||| | | || |
Sbjct 664 AGTGGATACGTGATT-CAGCTTAAG-CAAATGTGCCCGAT-CGGAGTCGACGT-ACGAAT 719
Query 736 CGCAATTAACATGGATCCTACTTCTCCAAATACATTT-GACAATGCTTATTTCAAAAACC 794
||||| ||||||||||| || |||| ||| ||| || |||||||||||||| || |
Sbjct 720 TGCAATCAACATGGATCCGACCAGTCCACGTAC-TTTCGATAATGCTTATTTCAAGAATC 778
Query 795 TCCAAAAAGGGATGGGTTTGTTCACGTCAGATCAAGTTTTGTTCT-CTGATGAACGATCT 853
||||| |||| | |||||||||| ||||||||||| | ||||| | | ||| |||||||
Sbjct 779 TCCAACAAGGAAAGGGTTTGTTCTCGTCAGATCAAATCTTGTT-TACAGATCAACGATCA 837
Query 854 AGATCAACTGTCAATTCATTTGCTTCTAGTGAAGCAACTTTTAGACAAGCTTTTATTTCG 913
||||| || || ||| ||||||| |||||||| | ||||||||||||||||||| |
Sbjct 838 AGATCTACAGTTAATACATTTGCCAATAGTGAAGGAGCTTTTAGACAAGCTTTTATCACA 897
Query 914 GCTATAACGAAGTTGGGTCGGGTTGGAGTTAAAACCGGTAACGCGGGTGAGATAAGACGG 973
|| || || ||||||||||||||||| ||| || ||||| || |||||||| || ||
Sbjct 898 GCCATCACCAAGTTGGGTCGGGTTGGTGTTTTGACTGGTAATGCTGGTGAGATTCGAAGG 957
Query 974 GATTGTTCACGTGTTAATTAG 994
||||||||||||| ||||||
Sbjct 958 GATTGTTCACGTGCCAATTAG 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40143431601
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5