BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18990.1
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480833 jgi|Araly1|480833|fgenesh2_kg.3__3534__AT2G18990.1 1203 0.0
Ahg484316 jgi|Araly1|484316|fgenesh2_kg.5__308__AT3G25580.1 835 0.0
> Ahg480833 jgi|Araly1|480833|fgenesh2_kg.3__3534__AT2G18990.1
Length=811
Score = 1203 bits (651), Expect = 0.0
Identities = 761/813 (94%), Gaps = 11/813 (1%)
Strand=Plus/Plus
Query 32 AAATTTGAAATCCTCAGAATTGCAGAGC--AAAGAA-CAACCATGGCGAATCCTATTCAA 88
||||||||| ||||||||||||| |||| ||| || |||||||||||||||||||||||
Sbjct 1 AAATTTGAATTCCTCAGAATTGCGGAGCAGAAAAAAGCAACCATGGCGAATCCTATTCAA 60
Query 89 GAGATTCTGGAGAAGCAAGTTCTAACGGTGGCTAAAGCTATGGAAGATAAGATAGACGAC 148
|||||||||||||| |||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 61 GAGATTCTGGAGAAACAAGTTCTAACGGTAGCGAAAGCTATGGAAGATAAGCTAGACGAC 120
Query 149 GAGATCGCCTCTTTAGAAAAGCTTGACGAGGACGATCTAGAGGTTTTGAGAGAGAGAAGG 208
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 121 GAGATCGCGTCTTTAGAAAAGCTTGACGAAGACGATTTAGAGGTTTTGAGAGAGAGAAGG 180
Query 209 TTAAAGCAAATGAAGAAAATGGCAGAGAAGAAGAAACGTTGGATTAGTCTTGGACATGGT 268
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 TTAAAGCAGATGAAGAAAATGGCAGAGAAGAAGAAACGTTGGATTGGTCTTGGACATGGT 240
Query 269 GAATACTCTGAGATCCATTCTGAGAAAGACTTCTTCTCCGTCGTTAAAGCCAGCGAACGC 328
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 GAATACTCTGAGATCCATTCTGAGAAAGACTTCTTCTCCATCGTTAAAGCCAGCGAACGC 300
Query 329 GTCGTCTGCCATTTCTACCGCGAGAATTGGCCATGTAAAGTGATGGATAAGCACATGAGT 388
||||||||||| |||| ||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 301 GTCGTCTGCCACTTCTTCCGCGAGAATTGGCCTTGTAAAGTGATGGATAAACATATGAGT 360
Query 389 ATATTGGCAAAGCAACACATTGAGACACGTTTTGTGAAGATCCAAGCTGAGAAAAGTCCG 448
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 ATATTGGCAAAGCAACACATTGAGACACGTTTTGTGAAGATTCAAGCTGAGAAAAGTCCG 420
Query 449 TTCTTGGCTGAGAGGCTCAAGATTGTTGTTCTACCTACTCTTGCACTTATTAAGAACACT 508
|||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 421 TTCTTGGCTGAGAGACTCAAGATTGTTGTTCTTCCTACTCTTGCTCTCATTAAGAACACT 480
Query 509 AAAGTCGATGATTATGTGGTTGGGTTCAATGAGCTTGGAGGGAAAGATGATTTCAGCACT 568
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 481 AAAGTCGATGATTATGTGGTTGGGTTCAATGAGCTGGGAGGGAAAGATGATTTCAGTACA 540
Query 569 GAGGATTTGGAAGAGAGAATAGCTAGAGCGCAAGTGATTCATTACGATGGAGAGTCATCG 628
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 541 GAGGATTTGGAAGAGAGAATAGCCAGAGCGCAAGTGATCCATTACGAGGGAGAGTCATCG 600
Query 629 TCGCTTAAACCAAAGTCGACAACACAAGTTAGAAGGAATGTGAGGCAGAGTGCTCGTTCA 688
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 601 TCGCTTAAACCAAAGTCTACAACACAAGTCAGAAGGAACGTGAGGCAGAGTGCTCGTTCA 660
Query 689 GATTCAGACTCCGAATAGACTCTCGGGTTTTT-CAGCAAACGTTT-GTTGGTATGTTCAT 746
||||| ||||||||||| | || | |||||| || |||| ||| ||||||||||||||
Sbjct 661 GATTCCGACTCCGAATAAAATC-CAAGTTTTTTCAACAAAT-TTTCGTTGGTATGTTCAT 718
Query 747 GATCTTCACTCTATCTTCAGCCCTTTTTTGGTGTGAGTTTGT---ATTGTGCGAATTCAG 803
|||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 719 GATCCTCACTCTATCTTCAGCCCTTTTTTG-TGTGAGTTTGTTGTATTGTGCGAATTCAG 777
Query 804 TTGTGATGTGTAATACAAAGTAGGAGATGATCT 836
||||||||||||||| |||||||||||||||||
Sbjct 778 TTGTGATGTGTAATAGAAAGTAGGAGATGATCT 810
> Ahg484316 jgi|Araly1|484316|fgenesh2_kg.5__308__AT3G25580.1
Length=781
Score = 835 bits (452), Expect = 0.0
Identities = 604/678 (89%), Gaps = 7/678 (1%)
Strand=Plus/Plus
Query 67 AACCATGGCGAATCCTATTCAAGAGATTCTGGAGAAGCAAGTTCTAACGGTGGCTAAAGC 126
||| ||||||||||| |||||||||||| | ||||| ||||||||| |||| || |||||
Sbjct 55 AACAATGGCGAATCCAATTCAAGAGATTATTGAGAAACAAGTTCTATCGGTAGCGAAAGC 114
Query 127 TATGGAAGATAAGATAGACGACGAGATCGCCTCTTTAGAAAAGCTTGACGAGGACGATCT 186
|||||| |||||| ||||||||||||| || ||| | || ||||||||||| |||||| |
Sbjct 115 TATGGAGGATAAGCTAGACGACGAGATTGCGTCTCTGGAGAAGCTTGACGAAGACGATTT 174
Query 187 AGAGGTTTTGAGAGAGAGAAGGTTAAAGCAAATGAAGAAAATGGCAGAGAAGAAGAAACG 246
|| |||||||||||||| || || ||||| |||||||||||||| ||||||||||||||
Sbjct 175 GGAAGTTTTGAGAGAGAGGAGATTGAAGCAGATGAAGAAAATGGCGGAGAAGAAGAAACG 234
Query 247 TTGGATTAGTCTTGGACATGGTGAATACTCTGAGATCCATTCTGAGAAAGACTTCTTCTC 306
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 235 TTGGATGAGTCTTGGACATGGTGAATACTCTGAGATTCATTCTGAGAAAGATTTCTTCTC 294
Query 307 CGTCGTTAAAGCCAGCGAACGCGTCGTCTGCCATTTCTACCGCGAGAATTGGCCATGTAA 366
||| |||||||| || ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct 295 CGTTGTTAAAGCTAGTGAACGCGTCGTTTGTCACTTCTACCGTGAGAATTGGCCTTGTAA 354
Query 367 AGTGATGGATAAGCACATGAGTATATTGGCAAAGCAACACATTGAGACACGTTTTGTGAA 426
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 355 AGTGATGGATAAACACATGACTATATTGGCAAAGCAACACATTGAGACACGTTTCGTGAA 414
Query 427 GATCCAAGCTGAGAAAAGTCCGTTCTTGGCTGAGAGGCTCAAGATTGTTGTTCTACCTAC 486
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct 415 GATCCAAGCTGAGAAAAGTCCATTCTTGGCTGAGAGGCTTAAGATTGTTGTTCTTCCCAC 474
Query 487 TCTTGCACTTATTAAGAACACTAAAGTCGATGATTATGTGGTTGGGTTCAATGAGCTTGG 546
||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 475 CCTTGCCCTCATTAAGAATACTAAAGTGGATGATTATGTGGTTGGGTTCAATGAGCTGGG 534
Query 547 AGGGAAAGATGATTTCAGCACTGAGGATTTGGAAGAGAGAATAGCTAGAGCGCAAGTGAT 606
||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||
Sbjct 535 AGGGAAAGATGATTTCAGCACAGAGGATCTGGAAGAGAGAATAGCCAGAGCACAAGTGAT 594
Query 607 TCATTACGATGGAGAGTCATCGTCGCTTAAACCAAAGTCGACAACACAAGTTAGAAGGAA 666
|||||||| ||||||||||| || | ||||| ||||| ||||||||||| ||||||||
Sbjct 595 CCATTACGAGGGAGAGTCATC-TC--TAAAACCGAAGTCTACAACACAAGTCAGAAGGAA 651
Query 667 TGTGAGGCAGAGTGCTCGTTCAGATTCAGACTCCGAATAGACTC-TCGGGT-TTTTCAGC 724
|||||||||||||||||||||||||| ||||||||||| | || | | | |||||| |
Sbjct 652 CGTGAGGCAGAGTGCTCGTTCAGATTCTGACTCCGAATAAA-TCCTATG-TCTTTTCAAC 709
Query 725 AAACGTTTGTTGGTATGT 742
||| ||||||| || |||
Sbjct 710 AAAGGTTTGTTCGTTTGT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5