BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19000.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480832 jgi|Araly1|480832|fgenesh2_kg.3__3533__AT2G19000.1 942 0.0
> Ahg480832 jgi|Araly1|480832|fgenesh2_kg.3__3533__AT2G19000.1
Length=658
Score = 942 bits (510), Expect = 0.0
Identities = 631/684 (92%), Gaps = 29/684 (4%)
Strand=Plus/Plus
Query 1 ATTCAATCTCacaacaaccaatctacacacaaaacaataacaacaacaacaacaacaaca 60
||||||| ||||||||| |||||| | ||| | |||| ||||||||||||||||||||||
Sbjct 1 ATTCAATTTCACAACAAACAATCT-C-CAC-ACACAACAACAACAACAACAACAACAACA 57
Query 61 acaaacaacaacaaacaacaacaaAATGTTTACAAAATCAATCCTTTTACCTTTTCTTCT 120
|| |||||||| ||||||||||||||| | ||||||| ||| |||||| |||||||||
Sbjct 58 AC-AACAACAA-TAACAACAACAAAATG--T-CAAAATCTATCTTTTTACTTTTTCTTCT 112
Query 121 GGTAATCATCTTCGTCTCAGCATCTCAAGCTAGTCGTCAACTCTGGGATAGTGGAATCAG 180
| ||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 113 GATAATCGTCTTCGTCTCAGCATCTCAAGCAAGTCGTCAACTCTGGGATGGTGGAATCAG 172
Query 181 CGAGATGTTTGGTTCCAAATCCGGGTTTCATCATGGATTTTCCGGGTTTTCGGGGTCCTC 240
||| |||||||| ||||||||||||||||| | |||||||| ||||||||||||| | |
Sbjct 173 CGAAATGTTTGGATCCAAATCCGGGTTTCA-C--GGATTTTCAGGGTTTTCGGGGT-C-C 227
Query 241 TGGAGGTGCTGGAGGTGCTGGAGGATCATTCGGAGATATGATGAATGCTGGAGGTGCACA 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ------T-CTGGAGGTGCTGGAGGATCATTCGGAGATATGATGAATGCTGGAGGTGCACA 280
Query 301 TACATGCTCGGCGCAAGGAGCTTGT-AGCGGTAAGAAGCTGACATGTCCCGAGGAGTGCT 359
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 281 TACATGCTCGGCGCAAGGAGCTTGTAAG-GGTAAGAAGCTGACATGTCCTGAGGAGTGCT 339
Query 360 ACAAATCAACCAACGTTAACAAGGATGGTTATAAAAGCACCAGCCGCAGTGGAGGATGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 340 ACAAATCAACCAACGTTAACAAGGATGGTTATAAAAGCACCAGCCGCAGCGGAGGATGTT 399
Query 420 CATTTGACTGTACGACCAAGTGTGCCGCGACTTGTTCAAATTAACATGTTAATTTGCACa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CATTTGACTGTACGACCAAGTGTGCCGCGACTTGTTCAAATTAACATGTTAATTTGCACA 459
Query 480 tatatattatatgttcgtatagtatgttgttatgttatgttatagcattatatagtctat 539
|||||||||||||||| |||| ||||||| |||||||||||||| || ||||||||||||
Sbjct 460 TATATATTATATGTTCTTATATTATGTTGATATGTTATGTTATAACACTATATAGTCTAT 519
Query 540 atatatgtcaatataataAAACCGGCAAGGTATATGGGAG-GTTT-GTGTCTCCCTTTGT 597
||||||| ||||| || |||||||||| |||||||||| |||| | ||||||||||||
Sbjct 520 ATATATG--AATATGAT-AAACCGGCAA-CTATATGGGAGAGTTTAG-GTCTCCCTTTGT 574
Query 598 AATTTTGTATGGATCTTGATTAGAAGCTTTCTATGAATCTATGTACATAATATGATTTTG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 AATTTTGTATGGATCTTGATTAGAAGCTTTCTATGAATCTATGTACATAATATGATTTTG 634
Query 658 AATAAAAGAAAATTTAGTGTTTCT 681
||||||||||||||||||||||||
Sbjct 635 AATAAAAGAAAATTTAGTGTTTCT 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5