BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19010.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319861 jgi|Araly1|319861|fgenesh1_pm.C_scaffold_3002877 1604 0.0
> Ahg319861 jgi|Araly1|319861|fgenesh1_pm.C_scaffold_3002877
Length=1038
Score = 1604 bits (868), Expect = 0.0
Identities = 980/1035 (95%), Gaps = 4/1035 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAAAGCTTGTTGGTTAGTTGCTGCCATCATATTTACAGCGGCCACGGTGGTTTAC 60
|||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1 ATGTCTAAAGTTTGTTGGTTAGTTGCTGCCATCATGTTTGCAGCGGCCACGATGGTTTAC 60
Query 61 GGACAACAAGCGCCGTGTTTCTTCGTTTTTGGAGACTCAATGTCCGATAATGGCAATAAT 120
|| ||||||| ||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 61 GGGCAACAAGAGCCGTGTTTCTTCGTCTTTGGAGACTCCATGTCCGATAATGGAAACAAT 120
Query 121 AATAACTTGAAATCCGAGGCAAAAGTCAACTTTTCACCTTATGGTAATGACTTTCCTAAA 180
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 121 AATAACTTGAAATCTGAGGCAAAAGTCAACTTTTCACCTTATGGTATTGACTTTCCCCAA 180
Query 181 GGCCCGACCGGCCGTTTTTCAAATGGCCGCACTATCCCTGATATTATCGGTGAATTATCC 240
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 181 GGCCCGACCGGCCGTTTTTCCAATGGCCGCACTATCCCCGATATTATCGGTGAACTATCG 240
Query 241 GGTTTTAAGGATTTTATACCGCCATTCGCCGAAGCATCACCTGAACAAGCTCACACCGGG 300
|||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 241 GGTTTTAAGGATTTCATACCGCCATTCGCCGGAGCATCACCGGAACAAGCTCACACCGGG 300
Query 301 ATGAACTACGCTTCCGGTGGAAGTGGACTTCGTGAAGAAACTAGCGAACACTTGGGAGAT 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 ATGAACTACGCTTCCGGTGGAAGTGGACTTCGTGAAGAAACAAGCGAACACTTGGGAGAT 360
Query 361 AGAATCAGTATAAGAAAGCAACTACAAAATCACAAGAC-GTCCATAACGAAAGCGAATGT 419
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 361 AGAATCAGTATAAGAAAGCAACTACAAAATCACAAGACAG-CGATAACGAAAGCGAATGT 419
Query 420 ACCAGCAGAAAGATTGCAACAATGTCTCTACATGATCAACATTGGAAGCAACGATTACAT 479
|||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 420 TCCAGCAGAAAGACTGCAACAATGTCTCTACACAATCAACATCGGAAGCAACGATTACAT 479
Query 480 CAACAATTACTTCATGTCAAAGCCGTACAACACTAAACGACGCTACACTCCTAAACAATA 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAACAATTACTTCATGTCAAAACCGTACAACACTAAACGACGCTACACTCCTAAACAATA 539
Query 540 CGCATATTCTCTCATTATTATTTACCGTTCCCACTTAAAGAATTTGCACCGTCTAGGAGC 599
|||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 540 CGCATATTCTCTCATTATTATTTACCGTTCTCACTTAAAGAATTTGTACCGACTAGGAGC 599
Query 600 GAGGAAGGTGGCAGTTTTCGGACTCAGCCAGATTGGGTGCACACCAAAGATAATGAAGTC 659
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 600 GAGGAAGGTGGCAGTTTTCGGACTCAGTCAAATTGGGTGCACACCAAAGATAATGAAGTC 659
Query 660 ACACAGTGACGGTAAAATCTGTTCCCGCGAAGTGAATGAAGCAGTGAAGATTTTTAATAA 719
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 660 ACACAGTGACGGTAAAATATGTTCCCGCGAAGTGAACGAGGCAGTGAAGATTTTTAATAA 719
Query 720 GAACCTTGACGACCTTGTCATGGATTTCAATAAGAAGGTCAGAGGTGCAAAGTTTACCTA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAACCTTGACGACCTTGTCATGGATTTCAATAAGAAGGTCAGAGGTGCAAAGTTTACCTT 779
Query 780 CGTCGATCTTTTCTCCGGTGGAGATCCCCAAGCCTTCAT-TTTCCTAGGATTTAAGGTTG 838
|||||||||||||| ||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 780 TGTCGATCTTTTCTCTGGTGGAGATCCCCTAGCCTTCAAATTTC-TAGGATTTAAGGTTG 838
Query 839 GAGGTAAGAGTTGTTGCACAGTAAACCCGGGGGAAGAACTTTGTGTCCCAAACCAGCCGG 898
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAGACAAGAGTTGTTGCACAGTAAACCCGGGGGAAGAACTTTGTGTCCCAAACCAGCCGG 898
Query 899 TTTGTGCAAACAGGACTGAATATGTCTTTTGGGATGATCTTCACAGCACGGAAGCCACTA 958
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 899 TTTGTGCAAACAGAACTGAATATGTCTTTTGGGATGATCTTCACAGCTCGGAAGCCACCA 958
Query 959 ATATGGTAGTGGCGAAGGGCTCGTTCGACGGAATCATAAGTAAACCGTATAGTATCGCCC 1018
||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 959 ATATGGTAGTGGCCAAGGGCTCGTTCGACGGAATCATAACTAAACCGTATAGCATCGCCC 1018
Query 1019 AGCTTGCGAAGGAAT 1033
|||||| ||||||||
Sbjct 1019 AGCTTGTGAAGGAAT 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5