BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19045.1
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931853 jgi|Araly1|931853|scaffold_304310.1 344 1e-94
Ahg931852 jgi|Araly1|931852|scaffold_304309.1 291 2e-78
> Ahg931853 jgi|Araly1|931853|scaffold_304310.1
Length=259
Score = 344 bits (186), Expect = 1e-94
Identities = 210/221 (95%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 1 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCGGCAGTGATTGCGGAACCAGTG 60
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 21 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCCGTGGTGATTGCGGAACCAGTG 80
Query 61 GAGAGTC-GGAATTACATAGAATATGGTGCGATTAACAAGTGCGCTGGTCCTAATCCTCC 119
|| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 81 GAAAGTCGGGAA-TACATAGAATATGGTGCGATTAACAAGTGCGCGGGTCCTAATCCTCC 139
Query 120 TCCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCCTAA-TCCCGTTAACGAATATA 178
||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 140 TCCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCC-AACTCCCGTTAACGAGTATA 198
Query 179 GCCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGTGACTGA 219
|||||||||||||||||||||||||||||||||| ||||||
Sbjct 199 GCCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGCGACTGA 239
> Ahg931852 jgi|Araly1|931852|scaffold_304309.1
Length=272
Score = 291 bits (157), Expect = 2e-78
Identities = 193/211 (91%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCGGCAGTGATTGCGGAACCAGTG 60
|||||||||||||||||||||||||||||||| | ||| || |||| ||||||||||||
Sbjct 21 ATGAAGGCATGGGTGATATGTTTGCTAGTGATATCCGCCGCGGTGACTGCGGAACCAGTA 80
Query 61 GAGAGTCGGAATTACATAGAATATGGTGCGATTAACAAGTGCGCTGGTCCTAATCCTCCT 120
|| |||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct 81 GAAAGTCGGAAATACATAGAAGATGGTGTGATTAACAAGTGCGCGGGTCCTAATCCTCCT 140
Query 121 CCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCCTAATCCCGTTAACGAATATAGC 180
||||||||| ||||||| ||||||||| | ||||| |||| |||||||||||| ||||||
Sbjct 141 CCGGGATGCCATCCTCCTGGGGCCGAAGATAAGAAACCTACTCCCGTTAACGAGTATAGC 200
Query 181 CGTGGCTGCAGCAAAATTCATCGGTGCAGGC 211
|||||||||||||||||||||||||||||||
Sbjct 201 CGTGGCTGCAGCAAAATTCATCGGTGCAGGC 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7484899156
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5