BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G19045.1 Length=219 Score E Sequences producing significant alignments: (Bits) Value Ahg931853 jgi|Araly1|931853|scaffold_304310.1 344 1e-94 Ahg931852 jgi|Araly1|931852|scaffold_304309.1 291 2e-78 > Ahg931853 jgi|Araly1|931853|scaffold_304310.1 Length=259 Score = 344 bits (186), Expect = 1e-94 Identities = 210/221 (95%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 1 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCGGCAGTGATTGCGGAACCAGTG 60 |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 21 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCCGTGGTGATTGCGGAACCAGTG 80 Query 61 GAGAGTC-GGAATTACATAGAATATGGTGCGATTAACAAGTGCGCTGGTCCTAATCCTCC 119 || |||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 81 GAAAGTCGGGAA-TACATAGAATATGGTGCGATTAACAAGTGCGCGGGTCCTAATCCTCC 139 Query 120 TCCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCCTAA-TCCCGTTAACGAATATA 178 ||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| Sbjct 140 TCCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCC-AACTCCCGTTAACGAGTATA 198 Query 179 GCCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGTGACTGA 219 |||||||||||||||||||||||||||||||||| |||||| Sbjct 199 GCCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGCGACTGA 239 > Ahg931852 jgi|Araly1|931852|scaffold_304309.1 Length=272 Score = 291 bits (157), Expect = 2e-78 Identities = 193/211 (91%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 1 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCGGCAGTGATTGCGGAACCAGTG 60 |||||||||||||||||||||||||||||||| | ||| || |||| |||||||||||| Sbjct 21 ATGAAGGCATGGGTGATATGTTTGCTAGTGATATCCGCCGCGGTGACTGCGGAACCAGTA 80 Query 61 GAGAGTCGGAATTACATAGAATATGGTGCGATTAACAAGTGCGCTGGTCCTAATCCTCCT 120 || |||||||| ||||||||| |||||| ||||||||||||||| ||||||||||||||| Sbjct 81 GAAAGTCGGAAATACATAGAAGATGGTGTGATTAACAAGTGCGCGGGTCCTAATCCTCCT 140 Query 121 CCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCCTAATCCCGTTAACGAATATAGC 180 ||||||||| ||||||| ||||||||| | ||||| |||| |||||||||||| |||||| Sbjct 141 CCGGGATGCCATCCTCCTGGGGCCGAAGATAAGAAACCTACTCCCGTTAACGAGTATAGC 200 Query 181 CGTGGCTGCAGCAAAATTCATCGGTGCAGGC 211 ||||||||||||||||||||||||||||||| Sbjct 201 CGTGGCTGCAGCAAAATTCATCGGTGCAGGC 231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7484899156 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5