BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19050.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480827 jgi|Araly1|480827|fgenesh2_kg.3__3528__AT2G19050.1 1635 0.0
Ahg319858 jgi|Araly1|319858|fgenesh1_pm.C_scaffold_3002874 1090 0.0
> Ahg480827 jgi|Araly1|480827|fgenesh2_kg.3__3528__AT2G19050.1
Length=1050
Score = 1635 bits (885), Expect = 0.0
Identities = 997/1052 (95%), Gaps = 4/1052 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAGGCAATATTCAAAGCGTTGTTGTTGGTCATTGCGACCACCGCAT-TTGCAAC 59
|||||||||||||| |||||| |||||||||||||| ||||| |||| || | |||||||
Sbjct 1 ATGGCCGAGGCAATGTTCAAAACGTTGTTGTTGGTCTTTGCGGCCACGGC-TATTGCAAC 59
Query 60 GACCGAGGCGGCTCTTGGACAGCGAGTGCCTTGCTATTTTGTTTTCGGAGACTCCGTCTT 119
| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 GGCCGAGGCAGCTCTTGGACAGCGAGTGCCTTGCTATTTCATTTTCGGAGACTCCGTCTT 119
Query 120 CGACAATGGTAACAACAATGTCCTGAATACCTCGGCCAAAGTCAACTATTCACCCTACGG 179
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 120 CGACAATGGTAACAACAATGTCTTGAATACCTCGGCCAAAGTCAACTATTCACCTTACGG 179
Query 180 TATTGATTTTGCTAGAGGTCCTACCGGCCGTTTCAGCAATGGTCGTAACATTCCTGACAT 239
|| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 180 TAATGATTTTGCTAGAGGTCCTACCGGCCGGTTCAGCAATGGTCGTAATATTCCTGACAT 239
Query 240 TATCGCTGAGCTAATGAGATTCAGTGATTACATTCCACCGTTCACGGGAGCATCACCGGA 299
||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 TATCGCTGAACAAATGAGATTCAGTGATTACATTCCACCGTTCACGGGAGCATCGGCGGA 299
Query 300 ACAAGCTCACATCGGAATAAACTACGCTTCTGGTGGAGGCGGAATACGTGAAGAAACTAG 359
||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 300 ACAAGCTCACACCGGAATAAACTACGCTTCTGGTGGCGGCGGAATTCGTGAAGAAACTAG 359
Query 360 CCAACATTTGGGTGAAATAATCAGTTTTAAAAAGCAAATAAAGAATCACCGGTCGATGAT 419
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 CCAACATTTGGGTGGAAGAATCAGTTTTAAAAGGCAAATAAAGAATCACCGGTCGATGAT 419
Query 420 TATGACGGCTAAGGTTCCAGAGGAGAAGCTGAATAAATGTCTATACACAATTAATATTGG 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TATGACGGCTAAAGTTCCAGAGGAGAAGCTGAATAAATGTCTATACACAATTAATATTGG 479
Query 480 AAGCAATGATTATCTCAACAACTATTTTATGCCGGCTCCATATATGACCAATAAGAAGTT 539
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 480 AAGCAATGATTATCTCAACAACTATTTCATGCCGGCTCCATACATGACCAATAAGAAGTT 539
Query 540 CAGTTTCGATGAATATGCAGATTCTCTCATTCGAAGTTATCGCTCTTATTTGAAGTCATT 599
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 CAGTTTCGATGAATATGCTGATTCTCTCATTCGAAGTTATCGCTCTCATTTGAAGTCATT 599
Query 600 GTACGTTCTAGGAGCAAGGAAGGTCGCTGTGTTTGGGGTGAGTAAGCTCGGATGCACGCC 659
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 GTATGTTCTAGGAGCAAGAAAGGTTGCTGTGTTTGGGGTGAGTAAGCTCGGATGCACGCC 659
Query 660 GCGTATGATTGCCTCCCATGGTGGTGGTAATGGTTGTGCTGCTGAAGTGAACAAAGCTGT 719
|||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||| ||
Sbjct 660 GCGTATGATTGCCTCCCATGGTGGCGGTAATGGCTGTGCTGCCGAAGTAAACAAAGCGGT 719
Query 720 AGAACCTTTCAATAAGAACCTCAAAGCTCTTGTCTATGAATTCAACCGAGATTTTGCTGA 779
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 720 AGAACCTTTCAACAAGAACCTCAAAGCTCTTGTCTATGAATTCAACCGAAACTTTGCTGA 779
Query 780 TGCTAAGTTCACCTTCGTTGATATCTTTAGCGGCCAAAGTCCTTTCGCGTTTTTCATGTT 839
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 TGCTAAGTTCACCTTCGTTGATATCTTTAGCGGCCAAACTCCTTTCGCGTTTTTCATGTT 839
Query 840 AGGGTTTAGGGTAACAGACAAAAGTTGTTGTACGGTAAAACCAGGGGAAGAACTTTGTGC 899
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 AGGGTTTAGGGTAACAAACAAAAGCTGTTGTACGGTAAAACCAGGGGAAGAACTTTGTGC 899
Query 900 GACAAATGAACCGGTCTGTCCAGTTCAAAGACGGTATGTGTACTGGGACAATGTCCACAG 959
||||||||||||||| ||||||| || |||| |||| |||||||||||||| ||||||||
Sbjct 900 GACAAATGAACCGGTTTGTCCAGCTCGAAGATGGTACGTGTACTGGGACAACGTCCACAG 959
Query 960 CACAGAAGCAGCCAATATGGTGGTTGCAAAGGCTGC-TTATGCCGGACTCATTACGTCTC 1018
||||||||||||||||||||| |||||||||||||| || | ||||||||||||||||||
Sbjct 960 CACAGAAGCAGCCAATATGGTCGTTGCAAAGGCTGCGTT-TACCGGACTCATTACGTCTC 1018
Query 1019 CTTACAGTCTTTCTTGGCTTGCAAGATTATAG 1050
||||||||||||||||||||||||||||||||
Sbjct 1019 CTTACAGTCTTTCTTGGCTTGCAAGATTATAG 1050
> Ahg319858 jgi|Araly1|319858|fgenesh1_pm.C_scaffold_3002874
Length=1044
Score = 1090 bits (590), Expect = 0.0
Identities = 900/1046 (86%), Gaps = 35/1046 (3%)
Strand=Plus/Plus
Query 1 ATGGCCGAGGCAATATTCAAAGCGTTGTTGTTGGTCATTGCGACCACCGCATTTGCAACG 60
||||||||| ||| |||||||| |||||| ||| | || | |||| || ||| || |
Sbjct 1 ATGGCCGAGAAAATGTTCAAAGCATTGTTG-TGGGC-TTTTG-CCACGGCGGTTGTAATG 57
Query 61 ACCGAGGCGGCTCTTGGACAGCGAGTGCCTTGCTATTTTGTTTTCGGAGACTCCGTCTTC 120
||||||||| || |||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 58 GCCGAGGCGGTTCGTGGACAACGAGTGCCTTGCTATTTCGTATTCGGAGACTCCGTCTTC 117
Query 121 GACAATGGTAACAACAATGTCCTGAATACCTCGGCCAAAGTCAACTATTCACCCTACGGT 180
||||||||||||||||||| | || |||| | |||||||||||||||||| || ||||||
Sbjct 118 GACAATGGTAACAACAATGACTTGGATACATTGGCCAAAGTCAACTATTCGCCTTACGGT 177
Query 181 ATTGATTTTGCTAGAGGTCCTACCGGCCGTTTCAGCAATGGTCGTAACATTCCTGACATT 240
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||
Sbjct 178 ATTGATTTTGCTAGAGGTCCTACCGGCCGGTTCAGCAATGGTCGTAATATTCCCGACTTT 237
Query 241 ATCGCTGAGCTAA-TGAGA-TTCAGTGATTACATTCCACCGTTCA-CGGGAGCATC-ACC 296
|| ||| | || || || || | | || |||||||||| |||| | |||| || | |
Sbjct 238 ATTGCT-AAAGAAGTGGGATTTAAAT-ATGACATTCCACCATTCATC-AGAGCGTCGA-C 293
Query 297 GGAACAAGCTCACATCGGAATAAACTACGCTTCTGGTGGAGGCGGAATACGT-GAAGAAA 355
|||||||||||||| |||||||||||||||||||||||| | |||| | | | |||||||
Sbjct 294 GGAACAAGCTCACACCGGAATAAACTACGCTTCTGGTGGTGCCGGACTTC-TCGAAGAAA 352
Query 356 CTAGCCAACATTTGGGTGAAATAATCAGTTTTAAAAAGCAAATAAAGAATCACCGG-TCG 414
||||||||||||| ||||||| |||||||||| |||||||||||| |||||||||| |
Sbjct 353 CTAGCCAACATTTAGGTGAAAGAATCAGTTTTGAAAAGCAAATAACGAATCACCGGAAC- 411
Query 415 ATGATTATGACGGCTAAG-GTTCCAGAGGAGAAGCTGAATAAATGTCTATACACAATTAA 473
|||||| ||||||| | |||||| ||||||||| || || |||||||| ||||||||
Sbjct 412 ATGATTTTGACGGC-GGGAGTTCCACCGGAGAAGCTTAAGAAGTGTCTATATACAATTAA 470
Query 474 TATTGGAAGCAATGATTATCTCAACAACTATTTTATGCCGGCTCCATATA-TGACCAATA 532
|||||||||| |||||||||||||||||||||| |||||||||||||| | | ||||||
Sbjct 471 TATTGGAAGCTATGATTATCTCAACAACTATTTCATGCCGGCTCCATACACT-ACCAAT- 528
Query 533 AG-AAGTTCAGTTTCGATGAATATGCAGATTCTCTCATTCGAAGTTATCGCTCTTATTTG 591
| || ||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||
Sbjct 529 GGCAATTTCAGTTTCGATGGATATGCTGATTATCTAATTCGAAGTTATCGCTCTTATTTG 588
Query 592 AAGTCATTGTACGTTCT-AGGAGCAAGGAAGGTCGCTGTGTTTGGGGTGAGTAAGCTCGG 650
|||||||||||||| || |||||||||||| || || |||||||||||||||||||| ||
Sbjct 589 AAGTCATTGTACGT-CTTAGGAGCAAGGAAAGTGGCGGTGTTTGGGGTGAGTAAGCTTGG 647
Query 651 ATGCACGCCGCGTATGATTGCCTCCCATGGTGGTGGTAATGGTTGTGCTGCTGAAGTGAA 710
||||||||||| |||||||||||||||||||| ||||| || || ||||||||||| ||
Sbjct 648 CTGCACGCCGCGGATGATTGCCTCCCATGGTGGAGGTAAAGGCTGCGCTGCTGAAGTAAA 707
Query 711 CAAAGCTGTAGAACCTTTCAATAAGAACCTCAAAGCTCTTGTC-TATGAATTCAACCGAG 769
|||||| || ||||||||||| ||||||||||||||||| | | | ||||||||| ||
Sbjct 708 CAAAGCGGTCGAACCTTTCAACAAGAACCTCAAAGCTCTCG-CATTTGAATTCAATAGAA 766
Query 770 ATTTTGCTGATGCTAAGTTCACCTTCGTTGATATCTTT-AGCGGCCAAAGTCCT-TTCGC 827
| |||||||||||||||||||||||||||||| | ||| ||| |||||| |||| || |
Sbjct 767 ACTTTGCTGATGCTAAGTTCACCTTCGTTGATCT-TTTCAGCAGCCAAAATCCTATT-GA 824
Query 828 GTTTTTCATGTTAGGGTTTAGGGTAACAGACAAAAGTTGTTGTACGGTAAAACCAGGGGA 887
|| |||||| |||||||||| |||||||||||||||||||||||||||| || ||||| |
Sbjct 825 GTATTTCATTTTAGGGTTTACGGTAACAGACAAAAGTTGTTGTACGGTAGAATCAGGGCA 884
Query 888 AGAACTTTGTGCGACAAATGAACCGGTCT-GTCC-AGTTCAAAGACGGTATGTGTACTGG 945
||||||||||||| ||||| |||||| || |||| | | | | ||| ||| |||||||||
Sbjct 885 AGAACTTTGTGCGGCAAATAAACCGG-CTTGTCCGAAT-CGAGGACAGTACGTGTACTGG 942
Query 946 GACAATGTCCACAGCACAGAAGCAGCCAATATGGTGGTTGCAAAGGCTGC-TTATGCCGG 1004
|||||||||||||||||||||||||| |||| ||| |||||| ||||||| || || |||
Sbjct 943 GACAATGTCCACAGCACAGAAGCAGCTAATAAGGTTGTTGCAGAGGCTGCGTT-TGTCGG 1001
Query 1005 ACTCATTACGTCTCCTTACAGTCTTT 1030
|||||||||||||||||||||| |||
Sbjct 1002 ACTCATTACGTCTCCTTACAGTATTT 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5