BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19060.1
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319858 jgi|Araly1|319858|fgenesh1_pm.C_scaffold_3002874 1519 0.0
Ahg480827 jgi|Araly1|480827|fgenesh2_kg.3__3528__AT2G19050.1 1094 0.0
Ahg480825 jgi|Araly1|480825|fgenesh2_kg.3__3526__AT2G19070.1 737 0.0
Ahg491739 jgi|Araly1|491739|fgenesh2_kg.7__1172__AT4G30140.1 233 3e-60
> Ahg319858 jgi|Araly1|319858|fgenesh1_pm.C_scaffold_3002874
Length=1044
Score = 1519 bits (822), Expect = 0.0
Identities = 978/1053 (93%), Gaps = 12/1053 (1%)
Strand=Plus/Plus
Query 32 ATGGCCGATAAAATGTTCAAAGCATTGTTGTGGGCTTTTGCCACGGCGGTTGTGATGGCC 91
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCCGAGAAAATGTTCAAAGCATTGTTGTGGGCTTTTGCCACGGCGGTTGTAATGGCC 60
Query 92 GAGGCTGTTCGTGGACAACTAGTCCCTTGCTATTTCGTTTTCGGAGACTCTGTCTTCGAC 151
||||| ||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||
Sbjct 61 GAGGCGGTTCGTGGACAACGAGTGCCTTGCTATTTCGTATTCGGAGACTCCGTCTTCGAC 120
Query 152 AATGGTAACAACAATGAGTTGGATACCCTGGCCAAAGTCAACTATTCACCTTACGGTATT 211
||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||
Sbjct 121 AATGGTAACAACAATGACTTGGATACATTGGCCAAAGTCAACTATTCGCCTTACGGTATT 180
Query 212 GATTTTGCTAGAGGTCCTACCGGGAGGTTCAGCAATGGTCGTAATATTCCCGACTTTATC 271
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 GATTTTGCTAGAGGTCCTACCGGCCGGTTCAGCAATGGTCGTAATATTCCCGACTTTATT 240
Query 272 GCTGAAGAATTGAGAATTAGTTATGACATTCCACCATTCACCAGAGCATCGACGGAACAA 331
||| ||||| || || ||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct 241 GCTAAAGAAGTGGGATTTAAATATGACATTCCACCATTCATCAGAGCGTCGACGGAACAA 300
Query 332 GCTCACACCGGAATAAATTACGCTTCTGGTGGTGCCGGACTTCTCGAAGAAACTAGCCAA 391
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTCACACCGGAATAAACTACGCTTCTGGTGGTGCCGGACTTCTCGAAGAAACTAGCCAA 360
Query 392 CATTTAGGTGAAAGAATCAGTTTTGAAAAGCAAATAACTAATCACCGGAAGATGATTATG 451
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 361 CATTTAGGTGAAAGAATCAGTTTTGAAAAGCAAATAACGAATCACCGGAACATGATTTTG 420
Query 452 ACGGCGGGAGTTCCACCGGAGAAGCTTAAGAAGTGTCTATATACAATTAATATTGGAAGC 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACGGCGGGAGTTCCACCGGAGAAGCTTAAGAAGTGTCTATATACAATTAATATTGGAAGC 480
Query 512 AATGATTATCTCAACAACTATTTCATGCCGGCTCCCTACACTACCAATGAAAATTTCAGT 571
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 481 TATGATTATCTCAACAACTATTTCATGCCGGCTCCATACACTACCAATGGCAATTTCAGT 540
Query 572 TTCGATGAATATGCTGATTTTCTCATTCAAAGTTATCGCTCTTATTTGAAGTCATTGTAC 631
||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||||
Sbjct 541 TTCGATGGATATGCTGATTATCTAATTCGAAGTTATCGCTCTTATTTGAAGTCATTGTAC 600
Query 632 GTCTTAGGAGCAAGGAAGGTAGCGGTCTTTGGGGTGAGTAAGCTTGGGTGCACGCCGCGG 691
||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||
Sbjct 601 GTCTTAGGAGCAAGGAAAGTGGCGGTGTTTGGGGTGAGTAAGCTTGGCTGCACGCCGCGG 660
Query 692 ATGATCGCCTCCCATGGTGGAGGTAAAGGCTGCGCTACTGAAGTGAACAAAGCTGTCGAA 751
||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||
Sbjct 661 ATGATTGCCTCCCATGGTGGAGGTAAAGGCTGCGCTGCTGAAGTAAACAAAGCGGTCGAA 720
Query 752 CCTTTCAACAAGAAACTTAAAGATCTC--ATCTCTGAATTCAACAGAATCAGTGTTGTTG 809
|||||||||||||| || |||| |||| || | ||||||||| |||| | | ||| ||
Sbjct 721 CCTTTCAACAAGAACCTCAAAGCTCTCGCAT-T-TGAATTCAATAGAAAC--T-TTGCTG 775
Query 810 ATCATGCTAAGTTCACCTTTGTTGATCTTTTCAGCAGCCAAAATCCTATTGAGTATTTCA 869
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AT---GCTAAGTTCACCTTCGTTGATCTTTTCAGCAGCCAAAATCCTATTGAGTATTTCA 832
Query 870 TTTTAGGATTTACGGTAACAGACAAAAGTTGTTGTACGGTAGAATCAGGGCAAGAACTTT 929
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTTTAGGGTTTACGGTAACAGACAAAAGTTGTTGTACGGTAGAATCAGGGCAAGAACTTT 892
Query 930 GTGCCGCAAATAAACCGGTTTGTCCGAATCGAGAACGGTACGTCTACTGGGACAATGTCC 989
|||| ||||||||||||| |||||||||||||| || |||||| ||||||||||||||||
Sbjct 893 GTGCGGCAAATAAACCGGCTTGTCCGAATCGAGGACAGTACGTGTACTGGGACAATGTCC 952
Query 990 ATAGCACAGAAGCAGCTAATAAGGTCGTTGTAAAGGCTGCGTTTGCCGGACTCATTACGT 1049
| ||||||||||||||||||||||| |||| | |||||||||||| ||||||||||||||
Sbjct 953 ACAGCACAGAAGCAGCTAATAAGGTTGTTGCAGAGGCTGCGTTTGTCGGACTCATTACGT 1012
Query 1050 CTCCTATA-AGCATTTTACTGCTTGTACTATAA 1081
||||| || || |||||||||||| |||||||
Sbjct 1013 CTCCT-TACAGTATTTTACTGCTTACACTATAA 1044
> Ahg480827 jgi|Araly1|480827|fgenesh2_kg.3__3528__AT2G19050.1
Length=1050
Score = 1094 bits (592), Expect = 0.0
Identities = 895/1038 (86%), Gaps = 33/1038 (3%)
Strand=Plus/Plus
Query 32 ATGGCCGATAAAATGTTCAAAGCATTGTTG-TGGGCTTT--TGCCACGGCGGTTGTGATG 88
|||||||| |||||||||| | |||||| ||| |||| |||||||| ||| | |
Sbjct 1 ATGGCCGAGGCAATGTTCAAAACGTTGTTGTTGGTCTTTGCGGCCACGGCTATTGCAACG 60
Query 89 GCCGAGGCTGTTCGTGGACAACTAGTCCCTTGCTATTTCGTTTTCGGAGACTCTGTCTTC 148
|||||||| | || |||||| | ||| |||||||||||| ||||||||||||| ||||||
Sbjct 61 GCCGAGGCAGCTCTTGGACAGCGAGTGCCTTGCTATTTCATTTTCGGAGACTCCGTCTTC 120
Query 149 GACAATGGTAACAACAATGAGTTGGATACCCT-GGCCAAAGTCAACTATTCACCTTACGG 207
||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||
Sbjct 121 GACAATGGTAACAACAATGTCTTGAATA-CCTCGGCCAAAGTCAACTATTCACCTTACGG 179
Query 208 TATTGATTTTGCTAGAGGTCCTACCGGGAGGTTCAGCAATGGTCGTAATATTCCCGACTT 267
|| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
Sbjct 180 TAATGATTTTGCTAGAGGTCCTACCGGCCGGTTCAGCAATGGTCGTAATATTCCTGACAT 239
Query 268 TATCGCTGAAGAATTGAGAATT-AGTTATGACATTCCACCATTCACCAGAGCATCGACGG 326
|||||||||| || |||| ||| ||| || |||||||||| ||||| |||||||| |||
Sbjct 240 TATCGCTGAACAAATGAG-ATTCAGTGATTACATTCCACCGTTCACGGGAGCATCGGCGG 298
Query 327 AACAAGCTCACACCGGAATAAATTACGCTTCTGGTGGTGCCGGACTTC-TCGAAGAAACT 385
|||||||||||||||||||||| |||||||||||||| | |||| ||| | |||||||||
Sbjct 299 AACAAGCTCACACCGGAATAAACTACGCTTCTGGTGGCGGCGGAATTCGT-GAAGAAACT 357
Query 386 AGCCAACATTTAGGTGAAAGAATCAGTTTTGAAAA-GCAAATAACTAATCACCGGAAGAT 444
||||||||||| |||| ||||||||||||| |||| |||||||| ||||||||| |||
Sbjct 358 AGCCAACATTTGGGTGGAAGAATCAGTTTT-AAAAGGCAAATAAAGAATCACCGGTCGAT 416
Query 445 GATTATGACGGCGGGAGTTCCACCGGAGAAGCTTAAGAAGTGTCTATATACAATTAATAT 504
|||||||||||| ||||||| ||||||||| || || |||||||| |||||||||||
Sbjct 417 GATTATGACGGCTAAAGTTCCAGAGGAGAAGCTGAATAAATGTCTATACACAATTAATAT 476
Query 505 TGGAAGCAATGATTATCTCAACAACTATTTCATGCCGGCTCCCTACACT-ACCAATGAA- 562
|||||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||
Sbjct 477 TGGAAGCAATGATTATCTCAACAACTATTTCATGCCGGCTCCATACA-TGACCAAT-AAG 534
Query 563 AATTTCAGTTTCGATGAATATGCTGATTTTCTCATTCAAAGTTATCGCTCTTATTTGAAG 622
|| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 535 AAGTTCAGTTTCGATGAATATGCTGATTCTCTCATTCGAAGTTATCGCTCTCATTTGAAG 594
Query 623 TCATTGTACGT-CTTAGGAGCAAGGAAGGTAGCGGTCTTTGGGGTGAGTAAGCTTGGGTG 681
|||||||| || || ||||||||| ||||| || || ||||||||||||||||| || ||
Sbjct 595 TCATTGTATGTTCT-AGGAGCAAGAAAGGTTGCTGTGTTTGGGGTGAGTAAGCTCGGATG 653
Query 682 CACGCCGCGGATGATCGCCTCCCATGGTGGAGGTAAAGGCTGCGCTACTGAAGTGAACAA 741
||||||||| ||||| |||||||||||||| ||||| ||||| ||| | ||||| |||||
Sbjct 654 CACGCCGCGTATGATTGCCTCCCATGGTGGCGGTAATGGCTGTGCTGCCGAAGTAAACAA 713
Query 742 AGCTGTCGAACCTTTCAACAAGAAACTTAAAGATCTCATCTCTGAATTCAACAGAATCAG 801
||| || ||||||||||||||||| || |||| ||| ||| |||||||||| ||| |
Sbjct 714 AGCGGTAGAACCTTTCAACAAGAACCTCAAAGCTCTTGTCTATGAATTCAACCGAAAC-- 771
Query 802 TGTTGTTGATCATGCTAAGTTCACCTTTGTTGATCT-TTTCAGCAGCCAAAATCCTATT- 859
| ||| |||| |||||||||||||| |||||| | ||| ||| |||||| |||| ||
Sbjct 772 T-TTGCTGAT---GCTAAGTTCACCTTCGTTGATATCTTT-AGCGGCCAAACTCCT-TTC 825
Query 860 GAGTATTTCATTTTAGGATTTACGGTAACAGACAAAAGTTGTTGTACGGTAGAATCAGGG 919
| || |||||| ||||| |||| ||||||| ||||||| |||||||||||| || |||||
Sbjct 826 GCGTTTTTCATGTTAGGGTTTAGGGTAACAAACAAAAGCTGTTGTACGGTAAAACCAGGG 885
Query 920 CAAGAACTTTGTGCCG-CAAATAAACCGGTTTGTCC-GAATCGA-GAACGGTACGTCTAC 976
||||||||||||| | ||||| ||||||||||||| | |||| || ||||||| |||
Sbjct 886 GAAGAACTTTGTGC-GACAAATGAACCGGTTTGTCCAGC-TCGAAGAT-GGTACGTGTAC 942
Query 977 TGGGACAATGTCCATAGCACAGAAGCAGCTAATAAGGTCGTTGTAAAGGCTGCGTTTGCC 1036
|||||||| ||||| |||||||||||||| |||| |||||||| ||||||||||||| ||
Sbjct 943 TGGGACAACGTCCACAGCACAGAAGCAGCCAATATGGTCGTTGCAAAGGCTGCGTTTACC 1002
Query 1037 GGACTCATTACGTCTCCT 1054
||||||||||||||||||
Sbjct 1003 GGACTCATTACGTCTCCT 1020
> Ahg480825 jgi|Araly1|480825|fgenesh2_kg.3__3526__AT2G19070.1
Length=1514
Score = 737 bits (399), Expect = 0.0
Identities = 469/501 (94%), Gaps = 11/501 (2%)
Strand=Plus/Minus
Query 1319 ATTGTAGTAAGAACAAT-A-ATATATAGTTTA-----GAATCTGTTATTACAATTCAATA 1371
||| |||||| |||||| | |||||||||||| |||| ||||||||||||||||||
Sbjct 1514 ATTATAGTAAAAACAATAATATATATAGTTTATGTGTGAATTTGTTATTACAATTCAATA 1455
Query 1372 ATCACTACAATATAAGTAGAATTCAAATGAAAGTGCATAAATATTTGTATACGTCATGTA 1431
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1454 ATCACAACAATATAAGTAGAATTCAAATGAAAATGCATAAATATTTGTATACGTCATGTA 1395
Query 1432 TATAAAAAACATATAAGGCCTAGATATCTTCATAAAAGTGTTTCTTGAAGGCCTCCATGT 1491
||| ||||| | | || ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1394 TAT-AAAAAGAGACAA-GCCTAGATATCGTCATAGAAGTGTTTCTTGAAGGCCTCCATGT 1337
Query 1492 GAGCCACCTGTAGACACGTCGCGAGAATCACCGAGCCATCTTCGTTTTGATCCGGCAAGA 1551
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1336 GAGCCACCTGTAGACACGTAGCAAGAATCACCGAGCCATCTTCGTTTTGATCCGGCAAGA 1277
Query 1552 TCAGCGAGTCGCCGTC-AAAGTCATGCGTGCCTGGTCCCGTGTAGAACTCTTTGCCCCAT 1610
|||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1276 TCAGCGAGTCACCGTCGAAA-TCATGCGTGCCTGGTCCCGTGTAGAACTCCTTGCCCCAT 1218
Query 1611 CCGAAATCAAGGCCGTACATTGGCAAAGTTAACCAGCTCACCACTCCAAGATTTGGGTTT 1670
|||||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 1217 CCGAAATCAAGGCCATACATTGGCAAAGTTAACCAGCTAACCAATCCAAGATTAGGGTTT 1158
Query 1671 CCGTAGAATGGACCTTCCGTGCTTCCCAAGGCATGTAGATCTTGAAACTTCTTCAGATCT 1730
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1157 CCATAGAATGGACCTTCCGCGCTTCCCAAGGCATGTAGGTCTTGAAACTTCTTCAGATCT 1098
Query 1731 TTTTGGTTCTTAAGATACTCTATCCCAATCATCACGTATTCGTTTGTTACATTCTTTATG 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TTTTGGTTCTTAAGATACTCTATCCCAATCATCACGTATTCGTTTGTTACATTCTTTATG 1038
Query 1791 GCTTTACTGATTAAACTCGCC 1811
|||||||||||||||||||||
Sbjct 1037 GCTTTACTGATTAAACTCGCC 1017
> Ahg491739 jgi|Araly1|491739|fgenesh2_kg.7__1172__AT4G30140.1
Length=1234
Score = 233 bits (126), Expect = 3e-60
Identities = 357/464 (77%), Gaps = 33/464 (7%)
Strand=Plus/Plus
Query 103 TGGACAACTAGTC-CCTTGCTATTTCGT-TTTCGGAGACTCTGTCTTCGACAATGGTAAC 160
|||||||| || | || || || ||||| ||| |||||||||||||||||||||||||||
Sbjct 149 TGGACAACAAG-CGCCGTGTTACTTCGTGTTT-GGAGACTCTGTCTTCGACAATGGTAAC 206
Query 161 AACAATGAGTTGGATACCCTGGCCAAAGTCAACTATTCACCTTACGGTATTGATTTTGCT 220
||||||| ||| | ||| ||| || |||||||||| |||||| ||||| |||||| ||
Sbjct 207 AACAATGCCTTGAACACCAAGGCTAAGGTCAACTATTTACCTTATGGTATAGATTTTCCT 266
Query 221 -AGAGGTCCTACCGGGAGGTTCAGCAATGGTCGTAATATTCCCGACTTTATCGCTGAAGA 279
| |||||| ||||| |||| ||||| ||||| |||||||| ||| |||||||||||
Sbjct 267 CA-AGGTCCGACCGGTCGGTTTAGCAACGGTCGGAATATTCCAGACGTTATCGCTGAACT 325
Query 280 ATTGAGAATT-AGTTA-TGACATTCCACCATTCACCAGAGCATCGACG-GAACAAGCTCA 336
| | | || | | | | | |||||||| ||| || ||||||| || | ||||||| |
Sbjct 326 AGCGGGT-TTCAATGACTCA-ATTCCACCGTTCGCCGGAGCATC-ACAAGCACAAGCTAA 382
Query 337 CACCGGAATAAATTACGCTTCTGGTGGTGCCGGAC-T-TCT-CGAAGAAACTAGCCAACA 393
|| |||| | || || ||||| |||| ||||| | || |||||| || ||| || |
Sbjct 383 CATCGGACTCAACTATGCTTCCGGTG---CCGGAGGTATCCGCGAAGACACCAGCGAAAA 439
Query 394 TTTAGGTGAAAGAATCAGTTTTGA-AAAGCAAATAA-CTAATCACCGGAAGATGATTATG 451
| | ||||| ||||||||||| || ||||||||||| | || |||| | | ||| ||
Sbjct 440 TATGGGTGAGAGAATCAGTTT-GAGAAAGCAAATAAAC-AACCACCTGTCGGCGATCATA 497
Query 452 A-CGGCGG-GAGTTCCACCGGAGA-AGCTTAAG--AAGTGTCTATATACAATTAATATTG 506
| || ||| | || |||| |||| || ||||| || |||||||| ||||| || || |
Sbjct 498 AACG-CGGCG-GTGCCAC-GGAGTCAG-TTAAGGCAA-TGTCTATACACAATCAACATCG 552
Query 507 GAAGCAATGATTATCTCAACAACTATTTCATGCCGGCTCCCTAC 550
||||||| ||||| ||||||||||| ||| || || |||| |||
Sbjct 553 GAAGCAACGATTACCTCAACAACTACTTCTTGTCGCCTCC-TAC 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67991087325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5