BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G19070.1 Length=1530 Score E Sequences producing significant alignments: (Bits) Value Ahg480825 jgi|Araly1|480825|fgenesh2_kg.3__3526__AT2G19070.1 2309 0.0 > Ahg480825 jgi|Araly1|480825|fgenesh2_kg.3__3526__AT2G19070.1 Length=1514 Score = 2309 bits (1250), Expect = 0.0 Identities = 1433/1520 (94%), Gaps = 17/1520 (1%) Strand=Plus/Plus Query 7 AAAAGAAAGGGGGTTTGTGTTATGGCTCCCATAACTTTTAGAAAATCTTACACTATAGTA 66 ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 AAAAGAAAGGGTGTTTGTGTTATGGCTCCCATAATTTTTAGAAAATCTTACACTATAGTA 60 Query 67 CCGGCCGAACCAACGTGGAGCGGTAGGTTTCC-CTTAGCCGAGTGGGATCAAGTTGGTAC 125 ||||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||||| Sbjct 61 CCGGCCGAACCAACGTGGACCGGTCGGTTTCCAC-TAGCCGAGTGGGATCAAGTTGGTAC 119 Query 126 AATTACTCACATTCCCACCCTTTACTTT-TACGACAAGCCATCTGAATCTTTCCAAGGCA 184 ||| |||||||||||||||||||| ||| || || ||||||||||||||||||||||||| Sbjct 120 AATAACTCACATTCCCACCCTTTA-TTTCTATGATAAGCCATCTGAATCTTTCCAAGGCA 178 Query 185 ATGTAGTCGAAATCCTAAAA-ACCTCGTTGAGCCGTGTGCTAGTCCATTTTTACCCTATG 243 |||||||||||| ||||||| | |||||||||||||||||||||||||||||||| ||| Sbjct 179 ATGTAGTCGAAACCCTAAAAGA-GTCGTTGAGCCGTGTGCTAGTCCATTTTTACCCCATG 237 Query 244 GCTGGCCGTCTCAGATGGCTCCCTCGGGGACGGTTCGAGCTCAATTGTAACGCCGAGGGA 303 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 238 GCTGGCCGTCTCAGATGGCTCCCTCGGGGGCGATTCGAGCTCAATTGTAACGCCGAGGGA 297 Query 304 GTGGAATTCATTGAAGCGGAATCTGAGGGGAAGCTTTCGGATTTCAAAGACTTCTCTCCT 363 ||||||||||| ||||||||||| || || |||||||||||||||||||| ||||||||| Sbjct 298 GTGGAATTCATCGAAGCGGAATCCGAAGGAAAGCTTTCGGATTTCAAAGATTTCTCTCCT 357 Query 364 ACGCCGGAATTCGAGAATCTTATGCCGCAAGTAAACTATAAAAACCCTATCGAAACGATT 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ACGCCGGAATTCGAGAATCTTATGCCGCAAGTAAACTATAAAAACCCTATCGAAACGATT 417 Query 424 CCTCTATTTTTAGCTCAGGTAACCAAATTCAAATGCGGTGGAATAAGCCTTAGCGTCAAC 483 |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| Sbjct 418 CCTCTATTTTTAGCTCAGCTTACCAAATTCAAATGCGGTGGATTAAGCCTTAGCGTCAAC 477 Query 484 GTTTCCCACGCGATCGTAGATGGCCAAAGCGCGCTTCACTTAATATCGGAATGGGGAAGA 543 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 478 GTTTCCCACGCGATCGTCGATGGCCAAAGCGCGCTTCACTTAATATCGGAATGGGGAAGA 537 Query 544 CTCGCGCGCGGTGAACCGTTAGAAACCGTTCCATTTCTAGACCGGAAAATCCTCTGGGCT 603 || |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 538 CTAGCGCGCGGTGAACCTTTAGAAACCGTTCCATTTCTAGACAGGAAAATCCTCTGGGCT 597 Query 604 GGTGAACCGCTCCCACCGTTTGTGTCGCCCCCAAAGTTCGACCACAAAGAGTTTGATCAG 663 |||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||| Sbjct 598 GGTGAACCTCTCCCACCGTTTGAGTCGCCGCCAAAGTTCGATCACAAAGAGTTTGATCAG 657 Query 664 CCACCGTTTTTGATCGGAGAAACGGACAATGTAGAAGAGAGAAAGAAGAAAACGATTGTG 723 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 658 CCACCGTTTTTGATCGGAGAAACGGACAATGTAGAAGAGAGAAAGAAGAAGACGATTGTT 717 Query 724 GTGATGCTACCACTGAGCACATCTCAGCTGCAGAAGCTACGAAGTAAAGCCAACGGAAGC 783 || |||||| |||||||| |||||||||| |||||||| |||||||||| |||| |||| Sbjct 718 GTCATGCTAAAACTGAGCAAATCTCAGCTGGAGAAGCTAAGAAGTAAAGCGAACGCAAGC 777 Query 784 AAACACTCTGACCCGGCGAAAGGGTTTACAAGGTACGAGACCGTCACCGGACACGTGTGG 843 ||| || ||||||| ||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 778 AAATACGCTGACCCAGCGAAAGGGTTTACACGGTACGAGACCGTCACGGGACACGTGTGG 837 Query 844 AGGTGCGCGTGTAAAGCACGTGGCCACTCTCCGGAGCAACCAACGGCTCTAGGAATCTGT 903 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 838 AGGTGCGCGTGTAAAGCACGTGGCCATTCTCCGGAGCAACCCACGGCTCTAGGAATCTGT 897 Query 904 ATAGATACTCGTAGTCGGATGGAGCCACCTCTGCCACGCGGCTACTTCGGCAATGCTACT 963 ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| Sbjct 898 ATAGATACTCGTAGTCGGATGCAGCCACCTCTGCCCCGTGGCTACTTCGGCAATGCTACT 957 Query 964 CTTGACGTGGTCGCAGCAAGCACCTCAGGTGAACTGATATCGAATGAATTGGGTTTCGCG 1023 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 958 CTTGACGTGGTCGCAGCAAGCACCTCAGGCGAACTGATATCGAATGAATTGGGTTTCGCG 1017 Query 1024 GCGAGTTTAATCAGTAAAGCCATAAAGAATGTAACAAACGAATACGTGATGATTGGGATA 1083 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 GCGAGTTTAATCAGTAAAGCCATAAAGAATGTAACAAACGAATACGTGATGATTGGGATA 1077 Query 1084 GAGTATCTTAAGAACCAAAAAGATCTGAAGAAGTTTCAAGATCTACATGCCTTGGGAAGC 1143 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1078 GAGTATCTTAAGAACCAAAAAGATCTGAAGAAGTTTCAAGACCTACATGCCTTGGGAAGC 1137 Query 1144 ACGGAAGGTCCATTCTACGGAAACCCAAATCTTGGAGTGGTGAGCTGGTTAACTTTGCCA 1203 |||||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||| Sbjct 1138 GCGGAAGGTCCATTCTATGGAAACCCTAATCTTGGATTGGTTAGCTGGTTAACTTTGCCA 1197 Query 1204 ATGTACGGCCTTGATTTCGGATGGGGCAAAGAGTTCTACACGGGACCAGGCACGCATGAC 1263 ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1198 ATGTATGGCCTTGATTTCGGATGGGGCAAGGAGTTCTACACGGGACCAGGCACGCATGA- 1256 Query 1264 TTT-GACGGCGACTCGCTGATCTTGCCGGATCAAAACGAAGATGGCTCGGTGATTCTCGC 1322 ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1257 TTTCGACGGTGACTCGCTGATCTTGCCGGATCAAAACGAAGATGGCTCGGTGATTCTTGC 1316 Query 1323 GACGTGTCTACAGGTGGCTCACATGGAGGCCTTCAAGAAACACTTTTATGAAGATATCTA 1382 |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1317 TACGTGTCTACAGGTGGCTCACATGGAGGCCTTCAAGAAACACTTCTATGACGATATCTA 1376 Query 1383 GGCCTTATATGTTTTTTATATACATGACGTATACAAATATTTATGCACTTTCATTTGAAT 1442 ||| || | | ||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 1377 GGC-TTGTCTCTTTTT-ATATACATGACGTATACAAATATTTATGCATTTTCATTTGAAT 1434 Query 1443 TCTACTTATATTGTAGTGATTATTGAATTGTAATAACAGATTC-----TAAACTATATAT 1497 |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| Sbjct 1435 TCTACTTATATTGTTGTGATTATTGAATTGTAATAACAAATTCACACATAAACTATATAT 1494 Query 1498 -T-ATTGTTCTTACTACAAT 1515 | |||||| |||||| ||| Sbjct 1495 ATTATTGTTTTTACTATAAT 1514 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57287728480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5