BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19070.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480825 jgi|Araly1|480825|fgenesh2_kg.3__3526__AT2G19070.1 2309 0.0
> Ahg480825 jgi|Araly1|480825|fgenesh2_kg.3__3526__AT2G19070.1
Length=1514
Score = 2309 bits (1250), Expect = 0.0
Identities = 1433/1520 (94%), Gaps = 17/1520 (1%)
Strand=Plus/Plus
Query 7 AAAAGAAAGGGGGTTTGTGTTATGGCTCCCATAACTTTTAGAAAATCTTACACTATAGTA 66
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AAAAGAAAGGGTGTTTGTGTTATGGCTCCCATAATTTTTAGAAAATCTTACACTATAGTA 60
Query 67 CCGGCCGAACCAACGTGGAGCGGTAGGTTTCC-CTTAGCCGAGTGGGATCAAGTTGGTAC 125
||||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||||
Sbjct 61 CCGGCCGAACCAACGTGGACCGGTCGGTTTCCAC-TAGCCGAGTGGGATCAAGTTGGTAC 119
Query 126 AATTACTCACATTCCCACCCTTTACTTT-TACGACAAGCCATCTGAATCTTTCCAAGGCA 184
||| |||||||||||||||||||| ||| || || |||||||||||||||||||||||||
Sbjct 120 AATAACTCACATTCCCACCCTTTA-TTTCTATGATAAGCCATCTGAATCTTTCCAAGGCA 178
Query 185 ATGTAGTCGAAATCCTAAAA-ACCTCGTTGAGCCGTGTGCTAGTCCATTTTTACCCTATG 243
|||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 179 ATGTAGTCGAAACCCTAAAAGA-GTCGTTGAGCCGTGTGCTAGTCCATTTTTACCCCATG 237
Query 244 GCTGGCCGTCTCAGATGGCTCCCTCGGGGACGGTTCGAGCTCAATTGTAACGCCGAGGGA 303
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 238 GCTGGCCGTCTCAGATGGCTCCCTCGGGGGCGATTCGAGCTCAATTGTAACGCCGAGGGA 297
Query 304 GTGGAATTCATTGAAGCGGAATCTGAGGGGAAGCTTTCGGATTTCAAAGACTTCTCTCCT 363
||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||
Sbjct 298 GTGGAATTCATCGAAGCGGAATCCGAAGGAAAGCTTTCGGATTTCAAAGATTTCTCTCCT 357
Query 364 ACGCCGGAATTCGAGAATCTTATGCCGCAAGTAAACTATAAAAACCCTATCGAAACGATT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACGCCGGAATTCGAGAATCTTATGCCGCAAGTAAACTATAAAAACCCTATCGAAACGATT 417
Query 424 CCTCTATTTTTAGCTCAGGTAACCAAATTCAAATGCGGTGGAATAAGCCTTAGCGTCAAC 483
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 418 CCTCTATTTTTAGCTCAGCTTACCAAATTCAAATGCGGTGGATTAAGCCTTAGCGTCAAC 477
Query 484 GTTTCCCACGCGATCGTAGATGGCCAAAGCGCGCTTCACTTAATATCGGAATGGGGAAGA 543
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTTTCCCACGCGATCGTCGATGGCCAAAGCGCGCTTCACTTAATATCGGAATGGGGAAGA 537
Query 544 CTCGCGCGCGGTGAACCGTTAGAAACCGTTCCATTTCTAGACCGGAAAATCCTCTGGGCT 603
|| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 538 CTAGCGCGCGGTGAACCTTTAGAAACCGTTCCATTTCTAGACAGGAAAATCCTCTGGGCT 597
Query 604 GGTGAACCGCTCCCACCGTTTGTGTCGCCCCCAAAGTTCGACCACAAAGAGTTTGATCAG 663
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 598 GGTGAACCTCTCCCACCGTTTGAGTCGCCGCCAAAGTTCGATCACAAAGAGTTTGATCAG 657
Query 664 CCACCGTTTTTGATCGGAGAAACGGACAATGTAGAAGAGAGAAAGAAGAAAACGATTGTG 723
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 CCACCGTTTTTGATCGGAGAAACGGACAATGTAGAAGAGAGAAAGAAGAAGACGATTGTT 717
Query 724 GTGATGCTACCACTGAGCACATCTCAGCTGCAGAAGCTACGAAGTAAAGCCAACGGAAGC 783
|| |||||| |||||||| |||||||||| |||||||| |||||||||| |||| ||||
Sbjct 718 GTCATGCTAAAACTGAGCAAATCTCAGCTGGAGAAGCTAAGAAGTAAAGCGAACGCAAGC 777
Query 784 AAACACTCTGACCCGGCGAAAGGGTTTACAAGGTACGAGACCGTCACCGGACACGTGTGG 843
||| || ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 778 AAATACGCTGACCCAGCGAAAGGGTTTACACGGTACGAGACCGTCACGGGACACGTGTGG 837
Query 844 AGGTGCGCGTGTAAAGCACGTGGCCACTCTCCGGAGCAACCAACGGCTCTAGGAATCTGT 903
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 838 AGGTGCGCGTGTAAAGCACGTGGCCATTCTCCGGAGCAACCCACGGCTCTAGGAATCTGT 897
Query 904 ATAGATACTCGTAGTCGGATGGAGCCACCTCTGCCACGCGGCTACTTCGGCAATGCTACT 963
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 898 ATAGATACTCGTAGTCGGATGCAGCCACCTCTGCCCCGTGGCTACTTCGGCAATGCTACT 957
Query 964 CTTGACGTGGTCGCAGCAAGCACCTCAGGTGAACTGATATCGAATGAATTGGGTTTCGCG 1023
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 958 CTTGACGTGGTCGCAGCAAGCACCTCAGGCGAACTGATATCGAATGAATTGGGTTTCGCG 1017
Query 1024 GCGAGTTTAATCAGTAAAGCCATAAAGAATGTAACAAACGAATACGTGATGATTGGGATA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCGAGTTTAATCAGTAAAGCCATAAAGAATGTAACAAACGAATACGTGATGATTGGGATA 1077
Query 1084 GAGTATCTTAAGAACCAAAAAGATCTGAAGAAGTTTCAAGATCTACATGCCTTGGGAAGC 1143
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 GAGTATCTTAAGAACCAAAAAGATCTGAAGAAGTTTCAAGACCTACATGCCTTGGGAAGC 1137
Query 1144 ACGGAAGGTCCATTCTACGGAAACCCAAATCTTGGAGTGGTGAGCTGGTTAACTTTGCCA 1203
|||||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 1138 GCGGAAGGTCCATTCTATGGAAACCCTAATCTTGGATTGGTTAGCTGGTTAACTTTGCCA 1197
Query 1204 ATGTACGGCCTTGATTTCGGATGGGGCAAAGAGTTCTACACGGGACCAGGCACGCATGAC 1263
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1198 ATGTATGGCCTTGATTTCGGATGGGGCAAGGAGTTCTACACGGGACCAGGCACGCATGA- 1256
Query 1264 TTT-GACGGCGACTCGCTGATCTTGCCGGATCAAAACGAAGATGGCTCGGTGATTCTCGC 1322
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1257 TTTCGACGGTGACTCGCTGATCTTGCCGGATCAAAACGAAGATGGCTCGGTGATTCTTGC 1316
Query 1323 GACGTGTCTACAGGTGGCTCACATGGAGGCCTTCAAGAAACACTTTTATGAAGATATCTA 1382
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1317 TACGTGTCTACAGGTGGCTCACATGGAGGCCTTCAAGAAACACTTCTATGACGATATCTA 1376
Query 1383 GGCCTTATATGTTTTTTATATACATGACGTATACAAATATTTATGCACTTTCATTTGAAT 1442
||| || | | ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1377 GGC-TTGTCTCTTTTT-ATATACATGACGTATACAAATATTTATGCATTTTCATTTGAAT 1434
Query 1443 TCTACTTATATTGTAGTGATTATTGAATTGTAATAACAGATTC-----TAAACTATATAT 1497
|||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1435 TCTACTTATATTGTTGTGATTATTGAATTGTAATAACAAATTCACACATAAACTATATAT 1494
Query 1498 -T-ATTGTTCTTACTACAAT 1515
| |||||| |||||| |||
Sbjct 1495 ATTATTGTTTTTACTATAAT 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5