BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19080.1
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480824 jgi|Araly1|480824|fgenesh2_kg.3__3525__AT2G19080.1 1635 0.0
> Ahg480824 jgi|Araly1|480824|fgenesh2_kg.3__3525__AT2G19080.1
Length=1157
Score = 1635 bits (885), Expect = 0.0
Identities = 992/1043 (95%), Gaps = 9/1043 (1%)
Strand=Plus/Plus
Query 23 CTTCTTCTTCTTTTGACCAGAGCTCTCACACATACGAGTCACTATAATGGAAGGCGATCA 82
||||||||||||| |||| |||||||| |||| || | || ||||||||||||||||
Sbjct 1 CTTCTTCTTCTTTAGACCCGAGCTCTCTCACACAC-A--AACGGTAATGGAAGGCGATCA 57
Query 83 AGAGACGAATGTTTATACTTTGGTGGCAAGGAAGCCTTCCTTCGATCTCCCAACAGCTTG 142
||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 58 AGAGACGGAGGTTTATACTTTGGTCGCAAGGAAACCTTCCTTCGATCTCCCAACAGCTTG 117
Query 143 CCCTAATTGTCTTCCTGCTTATATATACCTGAAATTAGCCCAGCTACCTTTTGAACTTGC 202
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 118 CCCTAATTGTCTTCCTGCTTACATATACCTGAAATTAGCCCAGCTTCCTTTTGAACTTGC 177
Query 203 GTTCAATTCAACCTTCCCTGATTCAGATGAACTGCCGTACTTTGAAAGT-GATACATATG 261
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 178 TTTCAATTCAACCTTCCCTGATTCAGATGAACTGCCGTACTTTGAAAGTGGA-ACATATG 236
Query 262 TTGCATATAACAATGAAGATGGAGGAGTAATTGAAAAACTGAAGAAAGATGGGATTGTTA 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTGCATATAACAATGAAGATGGAGGAGTAATTGAAAAACTGAAGAAAGATGGGATTGTTA 296
Query 322 ATCTGGACTCTCAGCTACAGTCTCTTTCGGATTATTTATCTTTGAAGGCTCTTATTGTGT 381
|||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| |
Sbjct 297 ATCTGGACTCTCAGCTCCAGTCTCTTCCGGATTATTTGTCGTTGAAGGCTCTTATTGTTT 356
Query 382 CTTGGCTAGAAGAAGCGCTTACCTATGAGATATGGGTTGGTACCGAGGGGATATCTAC-A 440
||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 357 CTTGGCTGGAAGAAGCACTTACCTATGAGATATGGGTTGGTACCGAGGGGATTTCTACTA 416
Query 441 TCGAAAATCTACTATTCAGATCTTCCTTGGGTGATCAGCAAGGTCCTGTTTTATAAGCAG 500
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 -CGAAAATCTACTATTCAGATCTTCCTTGGGTGATCAGTAAGGTCCTGTTTTATAAGCAG 475
Query 501 ACATACTTGGCAAAGAACCGTTTAGGAATCACCAAAGAGAACGCAGAGCAAAGAGAAAAA 560
|||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 476 ACATACATGGCCAAGAACCGTTTAGGAATCACTAAAGAGAACACAGAGCAAAGAGAAAAA 535
Query 561 CAGATATACAAGAGAGCAAGTGAGGCATATGAAGCTTTGTCGACTAGGTTAGGTGAGCAG 620
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 536 CAGATATACAAGAGAGCAAGTGAGGCATATGAAGCTTTGTCGACTAGGTTAGGCGAGCAG 595
Query 621 AAGTTTCTCTTTGAAGACAGGCCATCGAGTTTGGATGCTTTCTTACTCTCGCACATACTT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AAGTTTCTCTTTGAAGACAGGCCATCGAGTTTGGATGCTTTCTTACTCTCGCACATACTT 655
Query 681 TTTATAATCCAAGCGTTACCAGTTACATC-AGTGCTTCGGTGCAAACTTCTGGAACATAG 739
||||| |||||||| ||||| || ||||| | ||||||||||||||||||||||||||||
Sbjct 656 TTTATTATCCAAGCATTACCGGTAACATCTA-TGCTTCGGTGCAAACTTCTGGAACATAG 714
Query 740 TAATCTTGTGCGATATGCTGAGAAACTTAAGTCAGAGTTCCTTGAAGCCTCTTCTTCATC 799
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 715 TAATCTTGTGAGATATGCTGAGAAACTTAAGTCAGAGTTCCTTGAAGCTTCTTCTTCATC 774
Query 800 TCCTTCACCTCCACTTCACTCATTCCCTTCCTCATTTCCAAGAAAGAGTTCgaagccaaa 859
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 775 TCCTTCACCTCCACTTCACTCATTCCCCTCCTCATTTCCAAGAAAGAGTTCGAAGCCAAA 834
Query 860 gagcaaaccaaaggtagaaaagaccgaagaggagaaaaaatttaagaaaagagcaagGTT 919
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 835 GAGCAAACCAAAGGTGGAAAAGACCGAAGAGGAGAAAAAATTTAAGAAAAGAGCAAGATT 894
Query 920 CTTTCTAGCTGCTCAGTTTCTAGCTGTCGTCATTTACGTATCAGTGATGGGAGGAGGTAG 979
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 895 CTTTCTAGCTGCTCAGTTTCTAGCCGTCGTCATTTACGTATCAGTAATGGGAGGAGGTAG 954
Query 980 TTCTGATGAACTGGAGTATGAAGATGAAGATGACTAAACTAAAGCTTTTCTTATTAAATG 1039
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 955 TTCTGAGGAACTGGAGTATGAAGATGAAGATGACTAAACTAAAGCTTCTCTTATTAAATG 1014
Query 1040 GACCGGTAACTCTCAGGCGAACT 1062
|||||||||||||||||| ||||
Sbjct 1015 GACCGGTAACTCTCAGGCAAACT 1037
Score = 87.9 bits (47), Expect = 2e-16
Identities = 115/143 (80%), Gaps = 24/143 (17%)
Strand=Plus/Plus
Query 1092 TAATCTCTACGCTTTTTTCTTCTTGAACTCTTAGTTATGGAGAGGA-TACAGATGTGAGA 1150
|||||||||||| ||||| ||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 1037 TAATCTCTACGC-TTTTT-TTCTTGAACTCTTGGTTATGGAGCGGATTACAGATGTGAGA 1094
Query 1151 TTTAGTCACATTATAATGGTTTTCGACTTTTCGTTCTGAAGGAGA-GCTTTTGGCTTTTA 1209
||||| | | | |||| ||||||||||||| || ||||||||||
Sbjct 1095 -TTAGT--C---------G---T----TTTT-GTTCTGAAGGAGATTCTATTGGCTTTTA 1134
Query 1210 TATAAATTTCATTGGTTTTTAAG 1232
|||||||||||||||||||||||
Sbjct 1135 TATAAATTTCATTGGTTTTTAAG 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46090606653
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5