BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19130.1
Length=2594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480820 jgi|Araly1|480820|fgenesh2_kg.3__3521__AT2G19130.1 3637 0.0
> Ahg480820 jgi|Araly1|480820|fgenesh2_kg.3__3521__AT2G19130.1
Length=2579
Score = 3637 bits (1969), Expect = 0.0
Identities = 2330/2504 (93%), Gaps = 26/2504 (1%)
Strand=Plus/Plus
Query 104 TCTCATGGTTTCGTTCTTGACCCTCACTTCCTTCTTTTTCATCTGCTTCTTCATCCATGG 163
|||||||||||||||||||| ||| |||||||||| ||| |||| ||||||||||||||
Sbjct 89 TCTCATGGTTTCGTTCTTGAAACTCTCTTCCTTCTTCTTCCTCTGTTTCTTCATCCATGG 148
Query 164 CTCTTCCGCCGTCGACACAATCTCCGGCGACTTTACTCTCTCCGGCGACCAGACTATTGT 223
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 149 CTCTTCCGCCGTCGACACAATCTCCGGCGACTTTACTCTCTCCGGTGATCAGACAATTGT 208
Query 224 CTCCTCCGACGGAACTTACGAAATGGGTTTCTTTAAACCAGGTTCTTCTTCAAACTTCTA 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CTCCTCCGACGGAACTTACGAAATGGGTTTCTTTAAACCAGGTTCTTCTTCAAACTTCTA 268
Query 284 CATAGGTATGTGGTATAAGCAACTCTCTCAAACCATACTATGGGTAGCCAATCGAGACAA 343
|||||| |||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 269 TATAGGTCTGTGGTATAAGCAACTCTCTCAAACCGTCCTCTGGGTAGCCAATCGAGACAA 328
Query 344 AGCAGT-TTCCGACAAAAACTCATCAGTTTTCAAAATCTCCAACGGAAACTTAATCCTAC 402
| |||| || |||| |||||||| ||| |||||||||||||||||||||| ||| |||
Sbjct 329 ACCAGTCTT-TAACAAGAACTCATCTGTTCTCAAAATCTCCAACGGAAACTTGATCTTAC 387
Query 403 TCGACGGTAATTACCAGACTCCGGTTTGGTCCACCGGTCTCAACTCCA---CTTCCTCTG 459
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 388 TCGACGGTAATAACCAGACTCCGGTTTGGTCCACCGGTCTCAACTCCACCTCTTCCTCTG 447
Query 460 TTTCTGCTCTTGAAGCGGTTTTGCAAGACGACGGCAATCTTGTTCTCAGAACCGGCGGCT 519
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 448 TTTCTGCTCTTGAAGCGGTTTTGCTCGACGACGGCAATCTTGTTCTCAGAACCAGCGGTT 507
Query 520 CTAGCTTATCAGCTAACGTA-TTGTGGCAAAGCTTTGATCACCC-GGGAGACACGTGGCT 577
| ||| |||| | ||| | |||||||||||||| |||||||| || | |||||||||
Sbjct 508 CCGGCTCATCATCCAAC-AAGTTGTGGCAAAGCTTCGATCACCCTGGTA-ACACGTGGC- 564
Query 578 TCCC-GGAGTGAAGATCCGGTTAGATAAACGAACCGGAAAGAGCCAGCGACTCACTTCGT 636
|||| ||| |||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 565 TCCCTGGAATGAATATCCGGTTAGACAAACGAACCGGAAAGAGCCAACGACTCACGTCGT 624
Query 637 GGAAGAGTCTCGAAGATCCATCACCAGGTTTGTTCTCTCTCGAGCTAGACGAATCCACAG 696
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 625 GGAAGAGTCTCGAAGATCCATCACCAGGTTTGTTCTCTCTCGTGCTAGACGAGTCCACAG 684
Query 697 CTTACAAAATTCTCTGGAACGGATCTAATGAGTACTGGTCAAGTGGTCCTTGGAACCCTC 756
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 685 CTTACAAAATCCTCTGGAACGGATCTAATGAGTACTGGTCAAGTGGTCCTTGGAATAATC 744
Query 757 AGAGCAGGATCTTTGATTCGGTTCCC-GAGATGAGACTCAATTACATCTACAACTTCAGC 815
||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 745 AGAGCAGGATCTTTGATTCGG-TCCCTGAAATGAGACTCAATTACATCTACAACTTCAGC 803
Query 816 TTTTTCTCTAACACCACAGACTCATACTTCACGTACTCTATCTATAACCAGTTGAACGTG 875
|||||||||||| |||| || ||||||||||||||||| || |||||||| |||||||||
Sbjct 804 TTTTTCTCTAACTCCACGGAGTCATACTTCACGTACTCGATATATAACCACTTGAACGTG 863
Query 876 TCACGCTTCGTCATGGACGTGTCTGGACAGATCAAACAGTTCACTTGGTTAGAAGGAAAC 935
|| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 864 TCCCGTTTCGTCATGGACGTGTCGGGACAGATCAAACAGTTCACTTGGTTAGACGGAAAC 923
Query 936 AAGGCA-TGGAACTTGTTCTGGTCTCAACCTCGACAACAATGTCAGGTCTATAGGTATTG 994
|||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 924 AAGG-ACTGGAACTTGTTCTGGTCTCAACCTCGGCAACAATGTCAGGTCTATAGGTATTG 982
Query 995 TGGCTCCTTTGGAATTTGCAGTGACAAGTCTGAGCCTTTTTGCCGTTGCCCACAAGGGTT 1054
|||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 983 TGGCTCCTTTGGCGTTTGCAGTGACAAGTCTGAGCCTTTTTGCCGATGTCCGCAAGGGTT 1042
Query 1055 TAGGCCTATGTCGCAGAAAGACTGGGACTTGAAGGATTACTCTGCAGGCTGCGTTAGAAA 1114
|||||||| ||| |||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 1043 TAGGCCTAAGTCACAGAAAGATTGGGGCTTGAAGGATTACTCTGCAGGCTGCGAAAGAAA 1102
Query 1115 GACTGAACTACAATGCTCTCGTGGAGACATTAACCAGTTTTTTCGTCTTCCGAACATGAA 1174
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1103 GACTGAACTACAATGCTCTCGTGGAGACATTAACCAGTTTTTTCCTCTTCCAAACATGAA 1162
Query 1175 ACTAGCTGATAATTCAGAGGTATTGA-CAAGAACTAGTCTTAGTATTTGTGCCTCTGCTT 1233
|||||||||||||||||||| ||| | | ||||| ||||| |||||||||||||||||||
Sbjct 1163 ACTAGCTGATAATTCAGAGGAATT-ACCGAGAACGAGTCTGAGTATTTGTGCCTCTGCTT 1221
Query 1234 GCCAAGGAGATTGTTCTTGTAAGGCTTATGCATATGATGAAGGCTCGAGCAAATGCTTGG 1293
||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1222 GCCAAGGGGATTGTTCTTGTAAGGCTTATGCACATGATGAAGGCTCGAACAAATGCTTGG 1281
Query 1294 TTT-GGTCTAAAGATGTCTTGAATCTACAGCAACTTGAAGATGAAAACAGTGAGGGGAAC 1352
||| ||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 1282 TTTGGGT-TAAAGATGTCTTGAATCTTCAGCAACTTGAAGATGATAACAATGAGGGGAAT 1340
Query 1353 ATATTTTATCTTAGACTCGCTGCTTCTGACGTTCCTAATGTTGGTGCTTCGGGTAAGAGT 1412
| ||||||||||||||||||||||||||| ||||||||||| | |||| ||||| |||
Sbjct 1341 ACGTTTTATCTTAGACTCGCTGCTTCTGACATTCCTAATGTT--T-CTTCCGGTAAAAGT 1397
Query 1413 AACAATAAAGGTTTGATATTTGGGGCGGTTCTAGGCTCGTTAGGAGTAATAGTCCTTGTT 1472
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1398 AACAATAAAGGGATGATATTTGGTGCGGTTCTAGGCTCGTTAGGAGTAATAGTCCTTGTT 1457
Query 1473 CTGTTGGTGGTAATCTTGATCTTAAGGTACAGGAGGAGGAAGAGAATGAGAGGAGAGAAG 1532
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1458 CTGTTGGTGGTAATCTTGATCTTAAGGTACAAGAGGAGGAAGAGAATGAGAGGTGAGAAG 1517
Query 1533 GGTGATGGTACATTGAG-TGCGTTTAGCTATAGAGAATTACAGAATGCGACAAAGAATTT 1591
||||||||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1518 GGTGATGGTACATTG-GCTGCGTTTAGCTATAGAGAAATACAGAATGCGACGAAGAATTT 1576
Query 1592 CTCGGATAAGTTAGGAGGAGGAGGTTTTGGTTCAGTGTTCAAAGGTGCTTTACCGGATTC 1651
| |||| |||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 1577 CGCGGAGAAGTTAGGAGGAGGAGGTTTTGGTTCGGTGTTCAAAGGGGTTTTACCGGATTC 1636
Query 1652 TAGTGATATAGCGGTGAAGAGGCTTGAGGGTATTAGCCAAGGGGAGAAGCAGTTTAGGAC 1711
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1637 TAGTGATATAGCGGTGAAGAGGCTTGAGAGTATTAGCCAAGGGGAGAAGCAGTTTAGGAC 1696
Query 1712 GGAAGTAGTGACGATAGGAACGATCCAACACGTTAATCTAGTGAGGCTTCGCGGGTTTTG 1771
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1697 GGAAGTAGTGACGATAGGAACGATACAACACGTAAATCTAGTGAGGCTTCGCGGGTTTTG 1756
Query 1772 CTCCGAAGGAAGCAAGAAATTGTTGGTTTATGATTACATGCCTAATGGTTCTTTGGATTC 1831
|||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |
Sbjct 1757 TTCCGAAGGAAACAAGAAATTGCTGGTTTATGATTACATGCCTAACGGTTCTTTGGATGC 1816
Query 1832 TCATCTTTTCTTAAACCAAGTTGAAGAAAAGATCGTCCTCGGGTGGAAACTGCGGTTCCA 1891
|||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1817 TCATCTCTTCTTTAACCAAGTTGAAGAAAAGGTCGTCCTCGGGTGGAAACTTCGGTTCCA 1876
Query 1892 AATCGCGTTAGGGACAGCTAGAGGATTAGCTTATCTACACGATGAATGTAGAGACTGTAT 1951
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1877 AATCGCGTTAGGGACAGCTAGAGGATTAGCTTATCTACATGACGAATGCAGAGACTGTAT 1936
Query 1952 CATTCACTGCGATATAAAACCCGAAAACATTTTGTTAGATTCACAGTTTTGTCCCAAAGT 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 CATTCACTGCGATATAAAACCCGAAAACATTTTGTTAGATTCACAGTTTTGTCCCAAAGT 1996
Query 2012 TGCTGATTTCGGTTTGGCCAAGCTCGTGGGTCGAGATTTTAGTAGGGTTTTGACGACAAT 2071
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1997 TGCTGATTTCGGTTTAGCCAAGCTCGTGGGTCGAGATTTTAGCAGGGTTTTGACCACAAT 2056
Query 2072 GAGAGGCACAAGAGGGTATCTTGCACCGGAATGGATATCGGGAGTTGCGATAACAGCGAA 2131
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2057 GAGAGGCACAAGAGGCTATCTTGCACCTGAATGGATCTCGGGAGTTGCGATAACAGCGAA 2116
Query 2132 AGCCGATGTTTACAGCTACGGGATGATGTTATTTGAGCTTGTTTCCGGGAGGAGAAACAC 2191
||| ||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||
Sbjct 2117 AGCTGATGTTTACAGCTACGGTATGATGCTATTCGAGCTTGTTTCCGGGAGAAGAAACAC 2176
Query 2192 AGAGCAATCAGAGAACGAGAAAGTCAGATTCTTTCCAAGTTGGGCCGCGACCATACTCAC 2251
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2177 GGAGCAATCAGAGAACGAGAAAGTCAGATTCTTTCCGAGTTGGGCCGCGACCATACTCAC 2236
Query 2252 CAAAGATGGAGACATTCGCTCACTGGTTGACCCTAGACTAGAGGGAGATGCAGTGGACAT 2311
||||||||||||||| ||||| || ||||||||||||||||||| |||| |||||||||
Sbjct 2237 CAAAGATGGAGACATCCGCTCGCTACTTGACCCTAGACTAGAGGGCGATGAAGTGGACAT 2296
Query 2312 AGAGGAGGTCACGAGAGCTTGTAAAGTGGCGTGTTGGTGCATACAAGACGAAGAGAGTCA 2371
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 AGAGGAGCTCACGAGAGCTTGTAAAGTGGCGTGTTGGTGCATACAAGACGAAGAGAGTCA 2356
Query 2372 TAGGCCAGCGATGAGTCAAGTTGTTCAGATTCTTGAAGGTGTCTTGGAAGTGAATCCACC 2431
||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2357 TAGGCCAGCGATGAGCCAAATTGTTCAGATTCTTGAAGGTGTTTTGGAAGTGAATCCACC 2416
Query 2432 GCCTTTTCCAAGATCAATTCAAGCTTTAGTCGTTTCCGATGAAGACGTGGTCTTCTTTAC 2491
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 2417 GCCTTTTCCAAGATCAATTCAAGCTTTAGTCGATACCGATGAAGATGTGGTCTTCTTTAC 2476
Query 2492 TGAGTCGTCATCTTCGTCAAGCCATAATTCTTCACAGAATCACAAGC-Attcttcttctt 2550
|||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 2477 TGAGTCGTCATCGTCGTCAAGCCATAATTCTTCACAGAAACACA-GCCATTCTTCTTCTT 2535
Query 2551 cttcttcttcCAAGAAAATGACCAACGATAACTCTTCTGCTTAG 2594
| || ||||||||||||| ||||||| || ||||||| ||||||
Sbjct 2536 CCTCCTCTTCCAAGAAAACGACCAACAATGACTCTTCGGCTTAG 2579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97815749160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5