BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19150.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480819 jgi|Araly1|480819|fgenesh2_kg.3__3520__AT2G19150.1 1343 0.0
> Ahg480819 jgi|Araly1|480819|fgenesh2_kg.3__3520__AT2G19150.1
Length=1035
Score = 1343 bits (727), Expect = 0.0
Identities = 940/1040 (90%), Gaps = 25/1040 (2%)
Strand=Plus/Plus
Query 1 ATGAAGGGGGTGACGA-TTCACAATTTTTGTTACTCTTACTTCAAGGTGTGTCTACTTGT 59
|||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGGGGGTGAC-ATTTCACAGTTTTTGTTACTCTTACTTCAAGGTGTGTCTACTTGT 59
Query 60 GATGTCATTGGCATACGGATCCGCCGAATGGGATGGAAGCTCCAGCCAAATAGCTAAAAC 119
||| | |||||| ||||||||||| ||| |||||| || |||||||||||||||||||||
Sbjct 60 GATCTTATTGGCGTACGGATCCGCGGAAGGGGATGAAAACTCCAGCCAAATAGCTAAAAC 119
Query 120 TATCATCGTCAATCCAAACGATGCTAGATATTTCAAAACTGTCCAAAGTGCAATCGACTC 179
||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 120 TATAATCGTAAATCCAAACGATGCTAGATATTACAAAACGGTCCAAAGTGCAATCGACTC 179
Query 180 TATCCCTCTGCAAAACCAAGATTGGATCCGTATCCTCATAAGTAA-CGGTATTTACAGTG 238
||||||||||||||||||| | |||||||||||||||||| | || ||||||||||| |
Sbjct 180 TATCCCTCTGCAAAACCAAAACTGGATCCGTATCCTCATACG-AAGCGGTATTTACAAAG 238
Query 239 AGAAAGTAACAATACCTAG-GGGCAAAGGATACATATACATGCAAGGCGGAGGAATTGAA 297
|||||||||||||||| || || |||||||||||||| ||||||||| |||||||||||
Sbjct 239 AGAAAGTAACAATACC-AGCGGATAAAGGATACATATATATGCAAGGCAGAGGAATTGAA 297
Query 298 AAGACGATAATAGCTTACGGTGATCATCAACTCACCAATACTAGCGCCACTTTCACGTCC 357
|||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 298 AAGACGATAATAGCTTACGGCGATCATCAACAAACCGATACTAGCGCCACTTTCACGTCC 357
Query 358 TATCCTAGCAATATCATCATTACTGGAATCACCTTCAAAAATAAATATAATATTGCATCG 417
||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||
Sbjct 358 TATGCTAGCAATATCATCATCACTGGAATCACCTTCAAAAATACATATAATATCGCATCG 417
Query 418 ---AG-----TAGC-TCACCAACCAAACCAGCGGTGGCTGCGATGATGCTTGGAGATAAA 468
|| |||| ||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 418 ATTAGCTCTTTAGCAACACCAACCAAACCAGCGGTGGCTGCGAGGATGCTTGGAGACAAA 477
Query 469 TATGCAATAATCGATTCAAGTTTTGATGGTTTTCAAGATACGCTTTACGA-CGATTACGG 527
||||||||||||||||| ||||||||||||||||||||||| |||| ||| | ||| ||
Sbjct 478 TATGCAATAATCGATTCTAGTTTTGATGGTTTTCAAGATACACTTTGCGATGGTTTA-GG 536
Query 528 CAGACACTACTACAAACGATGTGTTATCTCCGGTGGCATAGATTTCATTTTTGGCGGTGC 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 CAGACACTACTACAAACGATGTGTTATCTCCGGTGGCATAGATTTCATTTTTGGCTATGC 596
Query 588 CCAATCCATTTTTGAGGGATGTACGTTGAAACTAAGGGTTGGAATCTACCCACCGAATGA 647
|||||||||||||||||| |||||||||||| || | | |||||||||||||| || ||
Sbjct 597 CCAATCCATTTTTGAGGGGTGTACGTTGAAATTATCGATCGGAATCTACCCACCAAACGA 656
Query 648 AGTGTATGGAACGATAACGGCACAAGGAAGGGACTCGCCGACGGATAAGGGAGGGTTCGT 707
| ||||| |||||||||||||||||||||| | ||||| | |||||| |||||||||||
Sbjct 657 ACCGTATGCAACGATAACGGCACAAGGAAGGCAGTCGCCAATGGATAAAGGAGGGTTCGT 716
Query 708 GTTTAAGGACTGCACTGTTA-TGGGAA--GC--GG-CAAGGCGTTACTGGGACGAGCGTG 761
|||||||||||||||||||| ||| || || || |||||||||||||||||||||||
Sbjct 717 GTTTAAGGACTGCACTGTTATTGGAAATGGCAAGGTTAAGGCGTTACTGGGACGAGCGTG 776
Query 762 GAAATCTTATTCACGTGTTATCTTTTACCGTTCT-ATGTTTAGCGACAATATTTTGCCAA 820
| || ||||| ||||||| |||||||||| |||| || ||| ||||| |||||||||||
Sbjct 777 GGAACCTTATGCACGTGTCATCTTTTACCATTCTAAT-TTTGGCGACGCTATTTTGCCAA 835
Query 821 TTGGTTGGGATGCTTGGAAAGCAAAAGGCCAAGAGGGGCATATAACGTTTGTGGAGTTTG 880
||||||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||
Sbjct 836 TTGGTTGGGATGCTTGGAACGGAAAAGGACAAGAGGAGCATATAACGTTTGTGGAGTTTG 895
Query 881 GTTGCACTGGAGTTGGAGCAGACACGTCAAAGAGAGTGCCATGGCTCACGAAGGCAAGTG 940
||||||||||||||||||| |||| ||||||||||||| ||||||||| |||||||||||
Sbjct 896 GTTGCACTGGAGTTGGAGCGGACATGTCAAAGAGAGTGTCATGGCTCAGGAAGGCAAGTG 955
Query 941 AAAAAGACGTTCTTCAGTTTACGAATCTTACCTTTATTGACGAAGAAGGTTGGCTCAGTA 1000
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAAAAGACGTTCTGCAATTTACGAATCTTACCTTTATTGACGAAGAAGGTTGGCTCAGTA 1015
Query 1001 GGCTTCCCATCAAATTTTAG 1020
||||||||||||||||||||
Sbjct 1016 GGCTTCCCATCAAATTTTAG 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5