BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G19150.1 Length=1020 Score E Sequences producing significant alignments: (Bits) Value Ahg480819 jgi|Araly1|480819|fgenesh2_kg.3__3520__AT2G19150.1 1343 0.0 > Ahg480819 jgi|Araly1|480819|fgenesh2_kg.3__3520__AT2G19150.1 Length=1035 Score = 1343 bits (727), Expect = 0.0 Identities = 940/1040 (90%), Gaps = 25/1040 (2%) Strand=Plus/Plus Query 1 ATGAAGGGGGTGACGA-TTCACAATTTTTGTTACTCTTACTTCAAGGTGTGTCTACTTGT 59 |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAGGGGGTGAC-ATTTCACAGTTTTTGTTACTCTTACTTCAAGGTGTGTCTACTTGT 59 Query 60 GATGTCATTGGCATACGGATCCGCCGAATGGGATGGAAGCTCCAGCCAAATAGCTAAAAC 119 ||| | |||||| ||||||||||| ||| |||||| || ||||||||||||||||||||| Sbjct 60 GATCTTATTGGCGTACGGATCCGCGGAAGGGGATGAAAACTCCAGCCAAATAGCTAAAAC 119 Query 120 TATCATCGTCAATCCAAACGATGCTAGATATTTCAAAACTGTCCAAAGTGCAATCGACTC 179 ||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 120 TATAATCGTAAATCCAAACGATGCTAGATATTACAAAACGGTCCAAAGTGCAATCGACTC 179 Query 180 TATCCCTCTGCAAAACCAAGATTGGATCCGTATCCTCATAAGTAA-CGGTATTTACAGTG 238 ||||||||||||||||||| | |||||||||||||||||| | || ||||||||||| | Sbjct 180 TATCCCTCTGCAAAACCAAAACTGGATCCGTATCCTCATACG-AAGCGGTATTTACAAAG 238 Query 239 AGAAAGTAACAATACCTAG-GGGCAAAGGATACATATACATGCAAGGCGGAGGAATTGAA 297 |||||||||||||||| || || |||||||||||||| ||||||||| ||||||||||| Sbjct 239 AGAAAGTAACAATACC-AGCGGATAAAGGATACATATATATGCAAGGCAGAGGAATTGAA 297 Query 298 AAGACGATAATAGCTTACGGTGATCATCAACTCACCAATACTAGCGCCACTTTCACGTCC 357 |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct 298 AAGACGATAATAGCTTACGGCGATCATCAACAAACCGATACTAGCGCCACTTTCACGTCC 357 Query 358 TATCCTAGCAATATCATCATTACTGGAATCACCTTCAAAAATAAATATAATATTGCATCG 417 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| Sbjct 358 TATGCTAGCAATATCATCATCACTGGAATCACCTTCAAAAATACATATAATATCGCATCG 417 Query 418 ---AG-----TAGC-TCACCAACCAAACCAGCGGTGGCTGCGATGATGCTTGGAGATAAA 468 || |||| ||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 418 ATTAGCTCTTTAGCAACACCAACCAAACCAGCGGTGGCTGCGAGGATGCTTGGAGACAAA 477 Query 469 TATGCAATAATCGATTCAAGTTTTGATGGTTTTCAAGATACGCTTTACGA-CGATTACGG 527 ||||||||||||||||| ||||||||||||||||||||||| |||| ||| | ||| || Sbjct 478 TATGCAATAATCGATTCTAGTTTTGATGGTTTTCAAGATACACTTTGCGATGGTTTA-GG 536 Query 528 CAGACACTACTACAAACGATGTGTTATCTCCGGTGGCATAGATTTCATTTTTGGCGGTGC 587 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 537 CAGACACTACTACAAACGATGTGTTATCTCCGGTGGCATAGATTTCATTTTTGGCTATGC 596 Query 588 CCAATCCATTTTTGAGGGATGTACGTTGAAACTAAGGGTTGGAATCTACCCACCGAATGA 647 |||||||||||||||||| |||||||||||| || | | |||||||||||||| || || Sbjct 597 CCAATCCATTTTTGAGGGGTGTACGTTGAAATTATCGATCGGAATCTACCCACCAAACGA 656 Query 648 AGTGTATGGAACGATAACGGCACAAGGAAGGGACTCGCCGACGGATAAGGGAGGGTTCGT 707 | ||||| |||||||||||||||||||||| | ||||| | |||||| ||||||||||| Sbjct 657 ACCGTATGCAACGATAACGGCACAAGGAAGGCAGTCGCCAATGGATAAAGGAGGGTTCGT 716 Query 708 GTTTAAGGACTGCACTGTTA-TGGGAA--GC--GG-CAAGGCGTTACTGGGACGAGCGTG 761 |||||||||||||||||||| ||| || || || ||||||||||||||||||||||| Sbjct 717 GTTTAAGGACTGCACTGTTATTGGAAATGGCAAGGTTAAGGCGTTACTGGGACGAGCGTG 776 Query 762 GAAATCTTATTCACGTGTTATCTTTTACCGTTCT-ATGTTTAGCGACAATATTTTGCCAA 820 | || ||||| ||||||| |||||||||| |||| || ||| ||||| ||||||||||| Sbjct 777 GGAACCTTATGCACGTGTCATCTTTTACCATTCTAAT-TTTGGCGACGCTATTTTGCCAA 835 Query 821 TTGGTTGGGATGCTTGGAAAGCAAAAGGCCAAGAGGGGCATATAACGTTTGTGGAGTTTG 880 ||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||| Sbjct 836 TTGGTTGGGATGCTTGGAACGGAAAAGGACAAGAGGAGCATATAACGTTTGTGGAGTTTG 895 Query 881 GTTGCACTGGAGTTGGAGCAGACACGTCAAAGAGAGTGCCATGGCTCACGAAGGCAAGTG 940 ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||| Sbjct 896 GTTGCACTGGAGTTGGAGCGGACATGTCAAAGAGAGTGTCATGGCTCAGGAAGGCAAGTG 955 Query 941 AAAAAGACGTTCTTCAGTTTACGAATCTTACCTTTATTGACGAAGAAGGTTGGCTCAGTA 1000 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 AAAAAGACGTTCTGCAATTTACGAATCTTACCTTTATTGACGAAGAAGGTTGGCTCAGTA 1015 Query 1001 GGCTTCCCATCAAATTTTAG 1020 |||||||||||||||||||| Sbjct 1016 GGCTTCCCATCAAATTTTAG 1035 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37932302415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5