BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19160.1
Length=2064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480818 jgi|Araly1|480818|fgenesh2_kg.3__3519__AT2G19160.1 2630 0.0
Ahg491750 jgi|Araly1|491750|fgenesh2_kg.7__1183__AT4G30060.1 1037 0.0
> Ahg480818 jgi|Araly1|480818|fgenesh2_kg.3__3519__AT2G19160.1
Length=1991
Score = 2630 bits (1424), Expect = 0.0
Identities = 1873/2071 (90%), Gaps = 106/2071 (5%)
Strand=Plus/Plus
Query 2 TTCTTGCTTCTTCTTCCTCGTCTTCGTCGTCTTCTGTGTACAGACATACCTCCATTTTAT 61
||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TTCTTCCTTCTTCGTCGTCGTCTTCGTCGTCTTCTGTGTACAGAAATACCTCCATTTTAT 60
Query 62 agagagcgagaaacagagagatc--aga-aga-aga--ag-ag--G--A-GGA-CAAAAT 108
|||||||||| || ||| | | | ||| ||| ||| || || | | | | |||||
Sbjct 61 AGAGAGCGAGCAAGAGAAACAACAAAGAGAGAGAGATCAGAAGAAGAAACGAATGAAAAT 120
Query 109 TA--TAGAAGGAAACGTTTCAATGCGTGCATAGAAATCGA-TTCTCATATACTCTGAGAG 165
|| ||||||||||||||||||| |||||||||| ||||| ||| |||||||||| | ||
Sbjct 121 TACCTAGAAGGAAACGTTTCAATACGTGCATAGATATCGATTTCACATATACTCT-A-AG 178
Query 166 ATTCATATAGAAGTTTCTGTTAGTTCGTAGCTCTAAGTTCTTCGTTCGTTGAGAGCTTGG 225
||| | | || ||| | ||| | | ||| || ||||||||| || ||||||||||
Sbjct 179 TTTC-T-T-TAA-TTT-AG-TAG--C-T--CTC-AA-TTCTTCGTTTGTGGAGAGCTTGG 225
Query 226 AAAATTGTCGCGGAGTCTGTTTTTGTTCTCCTAGATCTTTGGGTGGAAA-CAAACAAGCT 284
|||||| ||||||||||| |||| | |||||||||||||||| |||| |||||||| |
Sbjct 226 AAAATTTTCGCGGAGTCT-AATTTGAT-TCCTAGATCTTTGGGT-GAAAGCAAACAAGTT 282
Query 285 CGCGAAGACGAGAACTCTCGCCGT-ATTTGGGATCTGGTTCCGTTTAGAAGATTTTCCAG 343
||||||||||| || ||||||||| | ||||||||| |||||||| ||||||||| |||
Sbjct 283 CGCGAAGACGAAAAATCTCGCCGTCA-GTGGGATCTGATTCCGTTTGGAAGATTTTTCAG 341
Query 344 GTTTCGACTGGTTCTAGCTGCTAAGTGGAATCGACTCATTTTAGCTGAAGAAACTTGTTG 403
||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 342 GTTTCGACTGGTTCTAGCTGCCAAGTGGAATTGACTCATTTTAGCTGAAGAAAC----T- 396
Query 404 GGAGTGGGTTAAAGGGATATTTGAGGCTGAGTTGTTGCAGTATGCGATAAAGGTTTTTAT 463
| ||| | || |||| | | |||||| |||||| ||||||||||||||
Sbjct 397 ----T--GTT--A-GG----TTGA----G-G-TGTTGCGGTATGCAATAAAGGTTTTTAT 437
Query 464 GAGATGAAGGCAATT-AAGGGATGGCGTCTAGGCAAAATTAATTATATGCAGTCTTTGCC 522
||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 438 GAGATGAAGGC-ATTCAAGGGATGGCGTCTAGGCAAAATCAATTATATGCAGTCTTTGCC 496
Query 523 TGGGGCTCGCCATCGTGCTCCTACAAGGAAGCCTA-TATGGATCATTGCAGTGCTTTCAC 581
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 497 TGGGGCTCGCCATCGTGCTCCTACAAGGAAGCC-AGTATGGATCATCGCAGTGCTTTCAC 555
Query 582 TGATAGCAATGTTTGTAATTGGTGCTTACATGTTCCCTCATCACAGCAAAGCGGCATGTT 641
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 556 TGATAGCAATGTTTGTAATTGGTGCTTACATGTTCCCTCATCACAGAAAAGCTGCTTGTT 615
Query 642 ATATGTTTTCATCTAAAGGGTGCAAGGGGCTAACTGATTGGCTTCCACCATCACTGAGGG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 ATATGTTTTCATCTAAAGGGTGCAAGGGGCTAACTGATTGGCTTCCACCATCACTGAGGG 675
Query 702 AATATTCGGATGACG-AGATTGCAGCTCGTGTAGTTATT-AGTGAAATTTTGAGCTCCCC 759
||||||||||||||| || |||||||||||||||| ||| || |||||||||||||||||
Sbjct 676 AATATTCGGATGACGAAG-TTGCAGCTCGTGTAGTGATTAAG-GAAATTTTGAGCTCCCC 733
Query 760 TCGTGTTATAAAAAAGAGTTCTAAAATTGCATTTATGTTCTTAACTCCTGGTACATTGCC 819
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 734 TCGTGTTATAAAAAAGAGTTCTAAAATTGCATTTATGTTCTTAACTCCGGGTACATTGCC 793
Query 820 TTTTGAAAAGCTATGGGACCTCTTTTTCCAGGGTCATGAGGGGAAATTCTCTGTTTATAT 879
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 794 TTTTGAAAAGCTATGGGACCTCTTTTTCCAGGGTCATGAGGGGAGATTCTCTGTTTATAT 853
Query 880 ACATGCATCAAAGGATACTCCGGTTCACACCAGTCGTTACTTTCTTAACCGTGAGATTCG 939
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 854 TCATGCGTCAAAGGATACTCCGGTTCACACCAGTCGTTACTTTGTTAACCGTGAGATTCG 913
Query 940 AAGTGACGAGGTGGTCTGGGGTAGAATATCAATGATTGACGCTGAAAGACGTTTGTTGAC 999
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 914 AAGTGACGAGGTGGTCTGGGGTAGAATATCAATGATTGACGCCGAAAGACGTTTGTTGAC 973
Query 1000 CAATGCTCTTAGAGATCCTGAAAATCAGCAATTTGTATTACTCTCTGATAGTTGTGTGCC 1059
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 974 CAATGCTCTTAGAGATCCGGAAAATCAGCAATTTGTTTTACTCTCTGATAGTTGTGTGCC 1033
Query 1060 ACTTCGAAGTTTTGAATACATGTACAACTATATGATGCACAGCAATGTCAGCTATGTTGA 1119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1034 ACTTCGAAGTTTTGAATACATGTACAACTATATGATGCACAGCAATGTCAGTTATGTTGA 1093
Query 1120 CTGCTTTGATGATCCTGGTCCACATGGAACGGGCAGGCATATGGACCACATGTTGCCGGA 1179
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 CTGTTTTGACGATCCTGGTCCACATGGAACGGGCAGGCATATGGACCACATGTTGCCGGA 1153
Query 1180 AATTCCAAGGGAAGATTTTCGAAAGGGTGCACAGTGGTTCTCTATGAAGCGTCAGCATGC 1239
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1154 AATTCCAAGGGAAGATTTTCGAAAGGGTGCACAGTGGTTCTCCATGACGCGTCAGCATGC 1213
Query 1240 TGTAGTAACTGTGGCAGATAATCTTTACTACTCTAAATTCCGGGACTACTGTGGGCCAGG 1299
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1214 TGTGGTAACTGTGGCAGATAATCTTTACTACTCTAAGTTCCGGGACTACTGTGGGCCAGG 1273
Query 1300 TGTAGAGGGCAACAAGAACTGCATTGCGGATGAACACTATCTGCCAACATTCTTCTATAT 1359
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1274 TGTAGAGGGCAACAAGAACTGCATCGCGGATGAACACTATCTGCCAACATTCTTTTATAT 1333
Query 1360 GCTTGATCCTACTGGCATTGCTAACTGGACTGTGACATATGTTGATTGGTCTGAGAGAAA 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 GCTTGATCCTACTGGCATTGCTAACTGGACTGTGACATATGTTGATTGGTCTGAGAGAAA 1393
Query 1420 GTGGCATCCAAGAAAATACATGCCTGAAGATATCACGCTCGAGTTAATTAAGAACATCTC 1479
||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 1394 GTGGCATCCAAGAAAATACATGCCTGAAGATGTCACAAGAGAGTTAATTAAGAACATCAC 1453
Query 1480 GTCCATTGACGCAGTTTCACGCGTAACAAGTGAGAAAAACGGAGTAGTATCCTGGACGCA 1539
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1454 GTCCATTGACGCAGTTTCACGCGTAACAAGTGAGAAAAGGGGAGTAGTATCATGGACGCA 1513
Query 1540 TTGCATGTGGAATGGAATCAAAAGACCTTGCTATCTCTTTGGAAGGAAATTTCATGCTGA 1599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1514 TTGCATGTGGAATGGAATCAAAAGACCTTGCTATCTCTTTGGAAGGAAGTTTCATGCTGA 1573
Query 1600 TACTCTCGATAAACTGATGGAACTCTTCCCAAACTACA-CAAGCATCGTGTAGGGCTTTC 1658
||| |||||||||||||| ||||||||| ||||||||| | |||| |||||||||
Sbjct 1574 TACACTCGATAAACTGATCGAACTCTTCTCAAACTACATC--GCAT-----AGGGCTTTC 1626
Query 1659 GAGCAATTTTGATTGATTGATGAAATGCAATGCCAAGGAGGTATTCTTTTGACTCGGATT 1718
|||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1627 GAGCAATTTTGATTTATTGATGAAATGCCATGCAAAGGAGGTATTCTTTTGACTCGGATT 1686
Query 1719 CTTTGGCCAACGTTCAGTTATACCCATGAATCAAACTAAAACTTTTAGGCAATATCATGG 1778
||||| ||||||||| ||||||||||||||||||| |||||||| | ||| ||||||||
Sbjct 1687 CTTTGACCAACGTTCTGTTATACCCATGAATCAAATTAAAACTTG-ATGCATTATCATGG 1745
Query 1779 AACCCCTAGAAGCTGTATCTCACTGTAAAGTCCTTTTACGAGCAGAGAAAATCCGAAATC 1838
|||||| |||||||||||||| ||| | |||||||||||||| | |
Sbjct 1746 AACCCCAAGAAGCTGTATCTCGCTG------C-------GAGCAGAGAAAATC-G---T- 1787
Query 1839 GTGTGATCTTTGAGAAAGCTTAGGAAGTATTT-GGGGTTTTGTCATTTTGGTTGGGG-AC 1896
||| ||||| ||||| ||||||||||| ||| |||||||| ||||| | |||||| ||
Sbjct 1788 GTG--ATCTT-GAGAA-GCTTAGGAAGTGTTTTGGGGTTTT-TCATTAAG-TTGGGGGAC 1841
Query 1897 GTTGGGACATTTTTAACTCATCTGTTGTCACTACATCTCATTGTTATTTATAGAATTTTC 1956
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1842 GTTGGGGCATTTT-AACTCATCTGTTGTCACTACATCTCATTGTTATTTATAGAATTCTC 1900
Query 1957 AGAGTGCttttttgtttttctctctttttGTTGGAGCAC-TTTGTTGAATATGAAATGAA 2015
||||||| |||| ||||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 1901 AGAGTGCCTTTTGGTTTTTCTCTCATTTTGTTGGAACACCTTTGTTGAATATGAAATGAA 1960
Query 2016 AACAAGATATGAGGCTTATACAGTTTaaaaa 2046
||||||| |||||| ||||||||||||||||
Sbjct 1961 AACAAGACATGAGGTTTATACAGTTTAAAAA 1991
> Ahg491750 jgi|Araly1|491750|fgenesh2_kg.7__1183__AT4G30060.1
Length=1920
Score = 1037 bits (561), Expect = 0.0
Identities = 1021/1239 (82%), Gaps = 47/1239 (4%)
Strand=Plus/Plus
Query 434 GTTGTTGCAG-TATGCG-ATAAAGGTTTTTATGAGATGAAGGCAATTAAGGGATGGCGTC 491
||||||| | | |||| ||||||||||| |||||||||||||| |||| ||||| |||
Sbjct 416 GTTGTTGTGGCTCTGCGAATAAAGGTTTTGATGAGATGAAGGCAGTTAAAAGATGGAGTC 475
Query 492 TAGGCAAAATTA-ATTATA-T-GC-AGTCTTTGCCTGGGGCTCGCCATCGTGCTCCTACA 547
|||| || ||| ||| | | |||||||||||| ||||| || ||||||||| |
Sbjct 476 TAGG-GAACTTAGGCGATATTCCCGTGTCTTTGCCTGGAGCTCGACACCGTGCTCCT-CC 533
Query 548 AGGAAG-C--CTA-TATGGATCATTGCA--GTGCTTTCACTGAT-AGCAATGTT-TGTAA 599
| ||| | | | ||||||||| | || |||||||||||||| ||| ||||| | | |
Sbjct 534 CGCAAGACGACGAGTATGGATCA-T-CATGGTGCTTTCACTGATCAGC-ATGTTCT-TTA 589
Query 600 TT-GGTGCTTACATGTTCCCTCATCACAG-CAAAGCGGCATGTTATATGTTTTCATCTAA 657
|| | |||||||||| ||||||||| || |||| ||| ||||||||| ||||||| ||
Sbjct 590 TTACG-GCTTACATGTACCCTCATCATAGTAAAAG-GGCTTGTTATATGATTTCATC-AA 646
Query 658 -AGGGTGCAAGGGGCTAACTGATTGGCTTCCACCATCACTGAGGGAATATTCGGATGACG 716
||| ||||| | || |||||||||||||||| || |||||||||| ||| ||||| |
Sbjct 647 GAGGATGCAAAGCTTTAGCTGATTGGCTTCCACCTTCTCTGAGGGAATTTTCAGATGATG 706
Query 717 AGATTGCAGCTCGTGTAGTTATTAGTGAAATTTTGAGCTCCCCTCGTGTTATAAAAAAGA 776
||||||||||||| ||||| ||||| ||||| ||||| || |||| ||| || | |||||
Sbjct 707 AGATTGCAGCTCGCGTAGTCATTAGAGAAATATTGAGTTCACCTCCTGTCATTAGAAAGA 766
Query 777 GTTCTAAAATTGCATTTATGTTCTTAACTCCTGGTACATTGCCTTTTGAAAAGCTATGGG 836
||||||||||||||| ||||| |||||||| |||||||| ||||| || | ||| ||||
Sbjct 767 ATTCTAAAATTGCATTCATGTTTTTAACTCCCGGTACATTACCTTTCGAGAGGCTTTGGG 826
Query 837 ACCTCTTTTTCCAGGGTCATGAGGGGAAATTCTCTGTTTATATACATGCATCAAAGGATA 896
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 827 ACAGATTTTTCCAGGGCCATGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAA 886
Query 897 CTCCGGTTCAC-ACCAGTCGTTACTTTCTTAACCGTGAGATTCGAAGTGACGAGGTGGTC 955
|| |||||| || |||||||||||| | ||||| || ||||| ||||| ||||||||
Sbjct 887 GGCCAGTTCACTAC-AGTCGTTACTTTGTCAACCGCGAAATTCGTAGTGATGAGGTGGTG 945
Query 956 TGGGGTAGAATATCAATGATTGACGCTGAAAGACGTTTGTTGACC-AATGCTCTTAGAGA 1014
||||| || ||||||||| ||||||| || ||||| ||||| | | |||||||| |||||
Sbjct 946 TGGGGAAGGATATCAATGGTTGACGCAGAGAGACGGTTGTT-AGCTAATGCTCTCAGAGA 1004
Query 1015 TC-CTGAAAATCAGCAATTTGTATTACTCTCTGATAGTTGTGTGCCACTTCGAAGTTTTG 1073
| || ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1005 -CACTTCAAACCAGCAATTTGTTTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTG 1063
Query 1074 AATACATGTACAACTATATGATGCACAGCAATGTCAGCTATGTTGACTGCTTTGATGATC 1133
||||||| ||||| || |||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1064 AATACATTTACAATTACCTGATGCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATC 1123
Query 1134 CTGGTCCACATGGAACGGGCAGGCATATGGACCACATGTTGCCGGAAATTCCAAGGGAAG 1193
| |||| ||||||| | |||||||||||| | ||||||||||| ||||| |||| | |||
Sbjct 1124 CAGGTCAACATGGAGCAGGCAGGCATATGAATCACATGTTGCCTGAAATCCCAAAG-AAG 1182
Query 1194 -ATTTTCGAAAGGGTGCACAGTGGTTCTCTATGAAGCGTCAGCATGCTGTAGTAACTGTG 1252
|||||||||||||||||||||||||| | |||||||| || || ||||||| |||| ||
Sbjct 1183 GATTTTCGAAAGGGTGCACAGTGGTTCACCATGAAGCGACAACACGCTGTAGCAACTATG 1242
Query 1253 GCAGATAATCTTTACTACTCTAAATTCCGGGACTACTGTGGGCCAGGTGTAGAGGGCAAC 1312
||||||| |||||||||||||||||| ||||| ||||| ||||||||| ||||| ||||
Sbjct 1243 GCAGATAGTCTTTACTACTCTAAATTTCGGGATTACTGCGGGCCAGGTATAGAGAACAAC 1302
Query 1313 AAGAACTGCATTGCGGATGAACACTATCTGCCAACATTCTT-CTATATGCTTGATCCTAC 1371
||||||||||| || |||||||||||||||||||||||||| | ||||||| |||||
Sbjct 1303 AAGAACTGCATAGCTGATGAACACTATCTGCCAACATTCTTTC-ATATGCTCGATCCCGG 1361
Query 1372 TGGCATTGCTAACTGGACTGTGACATATGTTGATTGGTCTGAGAGAAAGTGGCATCCAAG 1431
||| ||| ||||||||||||| ||| | ||||||||||||||||||||||||||||| |
Sbjct 1362 TGGTATTTCTAACTGGACTGTAACACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCA- 1420
Query 1432 AAAA-TACATGCCTGAAGATATCACGCTCGAGTTAATTAAGAACATCTCGTCCATTGACG 1490
||| || |||||||| |||||||| | ||||||| | || ||| || |||| | ||||
Sbjct 1421 AAACGTATATGCCTGAGGATATCACACCCGAGTTACTAAACAACCTCACGTCTACTGACA 1480
Query 1491 CAGTT-TCACGCGTAACAAGTGA-GAAAAACGGAGTAGTA-TCCTGGACGCATTGCATGT 1547
|| | | || || ||||||| | | || | || | | |||| || ||| ||||
Sbjct 1481 CACTCGT-ACATGTCACAAGTGTTGGGATG-GGTGAAGAAATA-TGGATGCCTTGTATGT 1537
Query 1548 GGAATGGAATCAAAAGACCTTGCTATCTC-TTTGGAAGGAAATTTCATGCTGATACTCTC 1606
|||| |||||||||||||| ||||| || |||||||| |||||||| | ||||| |||
Sbjct 1538 GGAACGGAATCAAAAGACCGTGCTA-CTTGTTTGGAAGAAAATTTCACCCGGATACACTC 1596
Query 1607 GATAAACTGATGGAACTCTTCCCAAACTACACAAGCATC 1645
||||||||| |||| |||||| |||| |||||||| |||
Sbjct 1597 GATAAACTGTTGGATCTCTTCTCAAATTACACAAG-ATC 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77627919310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5