BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19170.1
Length=2906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480817 jgi|Araly1|480817|fgenesh2_kg.3__3518__AT2G19170.1 4427 0.0
Ahg491754 jgi|Araly1|491754|fgenesh2_kg.7__1187__AT4G30020.1 2433 0.0
> Ahg480817 jgi|Araly1|480817|fgenesh2_kg.3__3518__AT2G19170.1
Length=2878
Score = 4427 bits (2397), Expect = 0.0
Identities = 2756/2921 (94%), Gaps = 58/2921 (2%)
Strand=Plus/Plus
Query 1 GTTTTCTCTCTTTGGATACTTTGCTAGA--TCTCTATTCTACG----AACAAACCCAGAA 54
||||||||||||||||||||||| |||| ||||||||| ||| |||||||||||||
Sbjct 1 GTTTTCTCTCTTTGGATACTTTGGTAGATCTCTCTATTCCACGAACAAACAAACCCAGAA 60
Query 55 AC-AAAAATGTTTCTCTTTAATCACTCAATTAGAGAGATCTGAATAAActtgttctcttg 113
|| ||||| |||||| |||||||| || |||||||||||||||||||| ||||
Sbjct 61 ACAAAAAAAGTTTCTTTTTAATCATTCGATTAGAGAGATCTGAATAAA--------CTTG 112
Query 114 tttttcttcttcttcttcttcAAATGTGACTAAATTTATAATCTTTCGGTTTTGATTCAA 173
||| | | || || ||||||||||||| ||| ||||||||| ||||||||
Sbjct 113 ---TTC--C--ATAGTT-TT----TGTGACTAAATTTCTAACCTTTCGGTTCTGATTCAA 160
Query 174 TCGTACATTCACCATTTCGTCTCTCACAGAAAGCTAACtttttttttttGTGTGTGTTCT 233
| | | |||||||||||| | ||||||||| ||||||| | ||||||||
Sbjct 161 ---T-C--T-----TTTCGTCTCTCA-A-AAAGCTAAC----TTTTTTT-T-TGTGTTCT 201
Query 234 CTGTTCCGTCTCGTGAAGCAAATTTGAATCTACAGC--AAGAAATTAAAGTTGGAGCTTC 291
|||||||||| ||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 202 CTGTTCCGTCCCGTGAAGCAAATTTGAATCTACAGCAAAAAAAAATAAAGTTGGAGCTTC 261
Query 292 ACTTTGAGTGAAACCAAAATGGATATCGGGTTGAGAATTTTTGTCGTTTTCGTGCTTCTT 351
| |||| ||| |||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 262 A-TTTGTGTG-AACCAATATGGATATCGGGTTGAGAATTTTTGTCGTTTCCATGCTTCTT 319
Query 352 GTTGCTGTGACAGCAGAGGTTTATATTGTGACTATGGAAGGAGATCCAATCATAAGTTAC 411
||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 320 GTTACTGTGACAGCAGAGGTTTACATTGTGACTATGGAAGGAGATCCGATCATAAGTTAC 379
Query 412 AAAGGTGGCGAAAATGGTTTTGAAGCAACTGCTGTAGAATCTGATGAGAAGATTGATACA 471
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 380 AAAGGTGGAGAAAATGGTTTTGAAGCAACTGCTGTTGACTCTGATGAGAAGATTGATACA 439
Query 472 TCAAGTGAATTGGTGACAGT-GTATGCTCGTCACTTAGAGAGGAAGCACGATATGATTCT 530
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCAAGTGAATTGGTGACA-TCGTATGCTCGTCACTTAGAGAGGAAGCACGATATGATTCT 498
Query 531 TGGGATGCTCTTTGAGGAAGGATCATACAAAAAGCTTTACAGCTATAAACACCTTATAAA 590
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 499 TGGGATGCTCTTTGAGGAAGGATCATATAAAAAGCTTTACAGCTATAAACACCTTATAAA 558
Query 591 TGGATTTGCAGCTCATGTTTCTCCTGAGCAGGCAGAAACACTTCGTCGCGCCCCTGGTGT 650
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 559 TGGATTTGCAGCTCATGTTTCTCCAGAGCAGGCAGAAACACTTCGTCGCGCCCCTGGTGT 618
Query 651 GAGATCTGTAGACAAAGATTGGAAAGTGAGGAGACTCACCACACATACACCAGAGTTTTT 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 619 GAGATCTGTAGACAAAGATTGGAAAGTGAGGAGACTCACCACACATACACCAGAGTTTCT 678
Query 711 GGGACTTCCAACCGATGTTTGGCCAACAGGAGGCGGTTTTGATAGAGCAGGAGAAGATAT 770
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 679 GGGACTTCCAACCGATGTTTGGCCAACAGGAGGCGGTTTTGATAGAGCAGGGGAAGATAT 738
Query 771 TGTTATCGGGTTTGTTGACTCGGGGATTTATCCGCATCACCCGAGTTTCGCGTCTCATCA 830
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 739 TGTTATAGGGTTCGTTGACTCGGGGATTTATCCGCATCACCCGAGTTTCGCCTCTCACCA 798
Query 831 CAGATTACCTTATGGCCCTCTTCCTCATTACAAAGGGAAATGTGAAGAAGATCCTCATAC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 CAGATTACCTTATGGCCCTCTTCCTCATTACAAAGGGAAATGTGAAGAAGATCCTCATAC 858
Query 891 CAAGAAGAGTTTCTGCAACAGGAAGATCGTTGGAGCCCAACATTTTGCTGAAGCTGCTAA 950
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CAAGAAGAGCTTCTGCAACAGGAAGATCGTTGGAGCCCAACATTTTGCTGAAGCTGCTAA 918
Query 951 AGCGGCTGGGGCATTTAACCCAGATATCGACTATGCATCGCCAATGGATGGTGATGGGCA 1010
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 AGCGGCGGGGGCATTTAACCCAGATATCGACTATGCATCGCCAATGGATGGTGATGGGCA 978
Query 1011 TGGAAGTCATACAGCAGCTATAGCAGCTGGGAATAACGGTATTCCGTTGAGGATGCATGG 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TGGAAGTCATACAGCAGCTATAGCAGCTGGGAATAACGGTATTCCGTTGAGGATGCATGG 1038
Query 1071 TTATGAATTTGGAAAAGCGAGTGGGATGGCTCCTCGTGCAAGGATTGCTGTTTACAAGGC 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TTATGAATTTGGAAAAGCGAGTGGGATGGCTCCTCGTGCAAGGATTGCTGTTTACAAGGC 1098
Query 1131 TCTTTACCGGCTTTTTGGAGGCTTTGTTGCTGATGTTGTTGCTGCAATTGATCAGGCTGT 1190
||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1099 TCTGTACCGGCTTTTTGGAGGCTTTGTTGCTGATGTAGTTGCTGCGATTGATCAGGCTGT 1158
Query 1191 TCATGATGGAGTTGATATCCTGAGCCTCTCAGTTGGTCCAAATAGTCCTCCCACAACTAC 1250
|||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||||
Sbjct 1159 TCATGATGGAGTTGATATCCTGAGCCTCTCGGTCGGTCCAAACAGTCCTCCAACAACTAC 1218
Query 1251 CAAGACAACGTTCTTGAATCCATTTGATGCTACCCTTCTTGGGGCTGTAAAAGCTGGTGT 1310
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1219 CAAGACAACGTTCTTGAATCCATTTGATGCTACTCTTCTTGGGGCCGTAAAAGCTGGTGT 1278
Query 1311 TTTCGTTGCTCAAGCTGCAGGAAACGGAGGGCCCTTTCCGAAAACTTTGGTATCATATAG 1370
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1279 TTTCGTTGCTCAAGCTGCTGGAAACGGAGGGCCCTTTCCGAAAACGTTAGTATCATATAG 1338
Query 1371 TCCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGAAGATACAAAAATCATCTGAC 1430
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1339 TCCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGCAGATACAAAAATCATCTGAC 1398
Query 1431 CCTTGGGAATGGAAAAATGCTTGCAGGGATGGGCTTATCTCCACCAACACGCCCTCATCG 1490
|||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||
Sbjct 1399 CCTTGGGAATGGAAAAATGCTTGCTGGGATGGGGTTATCCCCACCAACTCGCCCTCATCG 1458
Query 1491 CTTGTACACTTTGGTTTCTGCAAATGATGTTCTGTTGGATTCATCTGTTTCGAAGTATAA 1550
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1459 ATTGTACACTTTGGTTTCTGCAAATGATGTTCTGCTGGATTCATCTGTTTCAAAGTATAA 1518
Query 1551 TCCATCTGATTGCCAAAGACCAGAAGTCTTCAACAAGAAATTAGTTGAGGGAAACATTCT 1610
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1519 TCCATCTGATTGCCAGAGACCAGAAGTCTTAAACAAGAAATTGGTTGAGGGAAACATTCT 1578
Query 1611 TCTCTGTGGATATTCATTCAACTTTGTTGTTGGTACAGCTTCCATCAAGAAAGTTGTTGC 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 TCTCTGTGGATATTCATTCAACTTTGTTGTTGGTACAGCTTCCATCAAGAAAGTTGTTGC 1638
Query 1671 AACCGCTAAGCATCTTGGTGCTGCTGGTTTTGTTCTAGTTGTTGAAAATGTATCTCCGGG 1730
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1639 AACCGCTAAGCATCTCGGTGCTGCTGGTTTTGTTCTTGTTGTTGAAAATGTATCTCCGGG 1698
Query 1731 AACCAAATTCGATCCAGTTCCTTCTGCCATTCCAGGAATCCTGATTACAGATGTGTCCAA 1790
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1699 AACCAAATTCGATTCAGTTCCTTCTGCCATTCCAGGAATCTTGATTACAGATGTGTCTAA 1758
Query 1791 GTCAATGGATTTGATCGATTACTACAACGCCAGTACATCAAGGGACTGGACAGGACGAGT 1850
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1759 GTCAATGGATTTGATCGATTACTACAACGTCAGTACATCAAGGGATTGGACAGGACGAGT 1818
Query 1851 AAAAAGCTTTAAAGCCGAGGGAAGCATCGGAGATGGCTTAGCACCCGTTCTTCACAAATC 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 AAAAAGCTTTAAAGCCGAGGGAAGCATCGGAGATGGCTTAGCACCCGTTCTTCACAAATC 1878
Query 1911 AGCACCTCAAGTGGCATTGTTCTCAGCTAGAGGACCCAACACCAAAGATTTCAGCTTTCA 1970
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1879 AGCACCTCAAGTGGCGTTGTTCTCAGCTAGAGGACCCAATACCAAAGATTTCAGCTTTCA 1938
Query 1971 AGATGCTGATCTTCTTAAACCGGATATTCTTGCACCCGGTTATCTCATATGGGCTGCTTG 2030
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1939 AGATGCTGATCTTCTTAAACCAGATATTCTTGCACCTGGTTATCTAATATGGGCTGCTTG 1998
Query 2031 GTGTCCAAATGGAACAGATGAACCCAATTATGTTGGTGAAGGATTTGCGCTAATATCAGG 2090
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GTGTCCAAATGGGACAGACGAGCCCAATTATGTTGGTGAAGGATTTGCGCTAATATCAGG 2058
Query 2091 AACCAGCATGGCTGCACCACACATAGCCGGGATAGCTGCGCTTGTGAAGCAGAAGCATCC 2150
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059 AACAAGCATGGCTGCACCACACATAGCCGGGATAGCTGCGCTTGTGAAGCAGAAGCATCC 2118
Query 2151 TCAATGGAGCCCAGCTGCTATCAAATCAGCTTTGATGACAACCTCAACAGTCATAGATAG 2210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2119 TCAATGGAGCCCAGCTGCTATCAAATCAGCTTTGATGACAACCTCAACAGTCATAGATAG 2178
Query 2211 AGCAGGAAGGCTTCTTCAGGCACAGCAATATTCAGACACAGAAGCTGTAACGCTTGTTAA 2270
||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||
Sbjct 2179 AGCAGGAAGGCTTCTTCAGGCACAGCAGTATTCAGACACTGAGGCTGTCACGCTTGTTAA 2238
Query 2271 AGCCACTCCTTTCGATTATGGAAGTGGTCATGTCAATCCAAGTGCTGCTTTAGATCCTGG 2330
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2239 AGCTACTCCTTTCGATTACGGAAGTGGTCATGTCAACCCAAGTGCTGCTTTAGATCCTGG 2298
Query 2331 TCTTATCTTTGATGCAGGTTATGAGGACTATCTAGGATTCTTATGCACAACCCCAGGGAT 2390
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2299 TCTTATCTTTGATGCAGGTTATGAGGACTATCTAGGATTCTTGTGCACAACCCCAGGGAT 2358
Query 2391 CAGCGCCCACGAGATAAGAAATTACACAAACACGGCCTGTAACTACGACATGAAACATCC 2450
||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 2359 CAGTGCCCACGAGATAAGAAATTACTCGAACACACCCTGTAACTACGACATGAAACATCC 2418
Query 2451 TTCAAACTTTAATGCACCATCTATAGCAGTTTCTCATCTAGTGGGGACCCAGACAGTAAC 2510
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 2419 TTCAAACTTTAATGCACCATCTATAGCAGTTTCTCACCTTGTGGGGACCCAGACCGTAAC 2478
Query 2511 AAGGAAAGTTACTAATGTAGCAGAGGTAGAAGAAACATACACAATAACAGCAAGGATGCA 2570
||||| ||| || ||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2479 AAGGAGAGTAACGAATGTGGCAGAGGTGGAAGAAACATACACAATAACAGCTAGGATGCA 2538
Query 2571 GCCGTCTATTGCCATCGAAGTGAACCCACCAGCGATGACACTCAGACCAGGCGCTACTAG 2630
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 2539 GCCGTCTATCGCCATCGAAGTGAACCCACCAGCAATGACACTCAGACCAGGCGCTTCTAG 2598
Query 2631 AACCTTCTCAGTCACTATGACCGTGAGATCGGTTTCTGGAGTATACAGCTTCGGGGAGGT 2690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2599 AACCTTCTCAGTCACTATGACCGTGAGATCGGTTTCTGGAGTATACAGCTTCGGGGAGGT 2658
Query 2691 AAAGTTAAAAGGTAGCCGAGGGCATAAGGTCAGGATTCCGGTGGTGGCTCTAGGACATCG 2750
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2659 GAAGTTGAAAGGTAGTCGAGGGCATAAGGTCAGGATTCCGGTGGTGGCTCTAGGACATCG 2718
Query 2751 GCGATGAACAAATCGTGTGGGTGTTGTAATATAAtttttttGTAATATGCAGTAATAAGA 2810
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2719 GCGATGAACAAATCGTGTGGGTTTTGTAATATTATTTTTTTGTAATATGCAGTAATAAGA 2778
Query 2811 GGGTAGTTCTAGAGAACTGTGTCTGCTAAAAAGAG-G-AAAATGCTTCATA--GCAGTTT 2866
|||||||||||||||| |||||||| ||||||||| | ||||||||||||| |||||||
Sbjct 2779 GGGTAGTTCTAGAGAATTGTGTCTGATAAAAAGAGAGGAAAATGCTTCATATAGCAGTTT 2838
Query 2867 GTATAATTAGTTATTGATATAAAACTCCAAA-ATTATGATC 2906
|||||||||||||| |||||||||||||||| || ||||||
Sbjct 2839 GTATAATTAGTTATCGATATAAAACTCCAAATAT-ATGATC 2878
> Ahg491754 jgi|Araly1|491754|fgenesh2_kg.7__1187__AT4G30020.1
Length=2918
Score = 2433 bits (1317), Expect = 0.0
Identities = 2138/2528 (85%), Gaps = 82/2528 (3%)
Strand=Plus/Plus
Query 277 TAAAG-TTGGAGCTTCACTTTGAGTGA-AACCAAAATGGATATCGGGTTG-AGAA-TTTT 332
||||| |||| |||| ||||| |||| || ||| |||||||||||| || | || || |
Sbjct 280 TAAAGCTTGGTGCTT--CTTTG-GTGAGAAGCAAGATGGATATCGGG-TGTA-AAGTTAT 334
Query 333 TGTCGTTTT--CGTGCTTCTTGTTGCTGTGACAGCAGAGGTTTATATTGTGACTATGGAA 390
||| |||| | || ||||| | |||||||||||||| |||| |||||||||||||||
Sbjct 335 CGTCTTTTTCACATGTTTCTT-CT-CTGTGACAGCAGAGATTTACATTGTGACTATGGAA 392
Query 391 GGAGATCCAATCATAAGTTACAAAGGTGGCGAAAATGGTTTTGAAGCAACTGCTGTAGAA 450
||||| |||||||| |||||||||||||| || ||||| ||||||||||||||||| |||
Sbjct 393 GGAGAACCAATCATTAGTTACAAAGGTGGTGATAATGGATTTGAAGCAACTGCTGTGGAA 452
Query 451 TCTGATGAGAAGATTGATAC-ATCAAGTGAATTGGTGACAGT-GTATGCTCGTCA-CTTA 507
||||||||||| |||||||| | | |||||| |||||||| | ||||| ||||| |||
Sbjct 453 TCTGATGAGAAAATTGATACGA-CTAGTGAACTGGTGACA-TCATATGCCCGTCACCTT- 509
Query 508 GAGAGGAAGCACGATATGATTCTTGGGATGCTCTTTGAGGAAGGATCATACAAAAAGCTT 567
||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 510 GAGAGGAAGCATGATATGCTTCTTGGAATGCTCTTTGAGGAAGGATCTTACAAAAAGCTT 569
Query 568 TACAGCTATAAACACCTTATAAATGGATTTGCAGCTCATGTTTCTCCTGAGCAGGCAGAA 627
|| |||||||||||||| || ||||| ||||||||||||||||| ||||| ||||| |||
Sbjct 570 TATAGCTATAAACACCTCATTAATGGTTTTGCAGCTCATGTTTCCCCTGATCAGGCGGAA 629
Query 628 ACACTTCGTCGCGCCCCTGGTGTGAGATCTGTAGA-CAAAGATTGGAAAGTGAGGAGACT 686
| |||||||| || |||||||||| |||||| || | ||||||||||||||||| |||
Sbjct 630 ATGCTTCGTCGTGCGCCTGGTGTGAAATCTGT-GAGTAGAGATTGGAAAGTGAGGAAACT 688
Query 687 CACCACACATACACCAGAGTTTTTGGGACTT-CCAACCGATGTTTGGCCAACAGGAGGCG 745
|||||||||||||||| ||||||||||| || ||||| |||||||||||||| || || |
Sbjct 689 CACCACACATACACCACAGTTTTTGGGA-TTACCAACTGATGTTTGGCCAACTGGTGGTG 747
Query 746 GTTTTGATAGAGCAGGAGAAGATATTGTTATCGGGTTTGTTGACTCGGGGAT-TTATCCG 804
||| ||||||||||||||||||||||||||| || ||| ||||||| ||||| || |||
Sbjct 748 GTTATGATAGAGCAGGAGAAGATATTGTTATTGGCTTTATTGACTCAGGGATATT-TCCA 806
Query 805 CATCACCCGAGTTTCGCGTCTCA--TCAC-AGATTACCTTATGGCCCTCTTCCTCA-TTA 860
|||||||| ||||| || ||||| ||| | | ||||||||||||||| |||| | |||
Sbjct 807 CATCACCCAAGTTTTGCCTCTCACCACACAACAGTACCTTATGGCCCTCATCCT-AGTTA 865
Query 861 CAAAGGGAAATGTGAAGAAGATCCTCATACCAAGAAGAGTTTCTGCAACAGGAAGATCGT 920
|||||||||||||||||||||||||||| | ||| |||||||||||| |||||||| |
Sbjct 866 CAAAGGGAAATGTGAAGAAGATCCTCATTCTAAGCTCAGTTTCTGCAACGGGAAGATCAT 925
Query 921 TGGAGCCCAACATTTTGCTGAAGCTGCTAAAGCGGCTGGGGCATTTAACCCAGATATCGA 980
|||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 926 AGGAGCCCAGCATTTTGCTGAAGCTGCTAAAGCAGCTGGTGCATTTAATCCGGATATCGA 985
Query 981 CTATGCATCGCCAATGGATGGTGATGGGCATGGAAGTCATACAGCAGCTATAGCAGCTGG 1040
|| ||| || ||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 986 CTTTGCTTCACCAATGGATGGCGATGGACATGGAAGTCATACAGCAGCTATTGCAGCTGG 1045
Query 1041 GAATAACGGTATTCC-GTTGAGGATGCATGGTTATGAATTTGGAAAAGCGAGTGGGATGG 1099
|||||| |||||||| | |||||||||| || ||||| ||||||||||| || |||||||
Sbjct 1046 GAATAATGGTATTCCAG-TGAGGATGCACGGCTATGAGTTTGGAAAAGCAAGCGGGATGG 1104
Query 1100 CTCCTCGTGCAAGGATTGCTGTTTACAAGGCTCTTTACCGGCTTTTTGGAGGCTTTGTTG 1159
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct 1105 CTCCTCGTGCAAGGATTGCTGTTTACAAAGCTCTCTACCGGCTCTTTGGAGGCTTTGTAG 1164
Query 1160 CTGATGTTGTTGCTGCAATTGATCAGGCTGTTCATGATGGAGTTGATATCCTGAGCCTCT 1219
||||||| |||||||| |||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 1165 CTGATGTGGTTGCTGCCATTGATCAGGCTGTTCATGATGGAGTAGATATTTTGAGTCTCT 1224
Query 1220 CAGTTGGTCCAAATAGTCCTCCCA-CAACTACCAAGACAACGTTCTTGAATCCATTTGAT 1278
| ||||||||||| |||||||| | | |||||||||||||| ||||| ||||||||||||
Sbjct 1225 CGGTTGGTCCAAACAGTCCTCC-AGCTACTACCAAGACAACATTCTTAAATCCATTTGAT 1283
Query 1279 GCTACCCTTCTTGGGGCTGTAAAAGCTGGTGTTTTCGTTGCTCAAGCTGCAGGAAACGGA 1338
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1284 GCTACACTTCTTGGGGCTGTAAAAGCTGGTGTTTTTGTTGCTCAAGCTGCTGGAAACGGA 1343
Query 1339 GGGCCCTTTCCGAAAACTTTGGTATCATATAGTCCCT-GGATAACTACTGTCGCCGCTGC 1397
|| |||||||||||||||||||| || || || |||| ||||||||||||| || |||||
Sbjct 1344 GGTCCCTTTCCGAAAACTTTGGTTTCGTACAG-CCCTTGGATAACTACTGTGGCTGCTGC 1402
Query 1398 AATTGATGATCGAAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCAGG 1457
|||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1403 AATTGATGATCGCAGATACAAAAATCATCTGACACTTGGAAATGGTAAAATGCTTGCAGG 1462
Query 1458 GATGGGCTTATCTCCACCAACACGCCCTCATCGCTTG-TACACTTTGGTTTCTGCAAATG 1516
|| || ||||| || | || || |||||||| || |||| |||| ||||||||||
Sbjct 1463 AATAGGATTATCCCCTTCTACTCGACCTCATCG-TTCATACAAGATGGTCTCTGCAAATG 1521
Query 1517 ATGTTCTG-TTGGATTCATCTGTT-TCGAAGTATAATCCATCTGATTGCCA-AAGACCAG 1573
|||||||| |||| ||| |||| | | ||| || ||||| || |||||||| ||| ||||
Sbjct 1522 ATGTTCTGCTTGG-TTCTTCTGGTAT-GAAATACAATCCGTCGGATTGCCAGAAG-CCAG 1578
Query 1574 AAGTCTTCAACAAGAA-ATTAGTTGAGGGAAACATTCTTCTCTGTGGATATTCATTCAAC 1632
||||||| ||||| || |||||| || ||||||||||| || ||||||||||| ||||||
Sbjct 1579 AAGTCTTGAACAA-AAGATTAGTCGAAGGAAACATTCTGCTTTGTGGATATTCTTTCAAC 1637
Query 1633 TTTGTTGTTGGTACAGCTTCCATCAAGAAAGTTGTTGCAACCGCTAAGCATCTTGGTGCT 1692
||||||| |||| ||||||||||||||||||||| || ||| || |||||||| || ||
Sbjct 1638 TTTGTTGCTGGTTCAGCTTCCATCAAGAAAGTTGCTGAAACTGCCAAGCATCTAGGCGCC 1697
Query 1693 GCTGGTTTTGTTCTAGTTGTTGAAAATGTATCTCCGGGAACCAAATTCGATCCAGTTCCT 1752
|||||||||||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 1698 GCTGGTTTTGTTCTTGTTGTCGAAAATGTTTCTCCTGGAACAAAATTCGATCCTGTTCCT 1757
Query 1753 TCT-GCCATTCCAGGAATCCTGATTACAGATGTGTCCAAGTCAATGGATTTGATCGATTA 1811
||| || ||||| || || |||||||||||||| || ||||||||||||||||| |||||
Sbjct 1758 TCTTGC-ATTCCTGGGATTCTGATTACAGATGTCTCTAAGTCAATGGATTTGATTGATTA 1816
Query 1812 CTACAACGCCA-GTACATCAAGGGACTGGACAGGACGAGTAAAA-AGCTTTAAAGCCGAG 1869
|||||| | | | || ||||| || |||| ||| ||||||| | ||||||||| ||
Sbjct 1817 CTACAATGTTACG-ACGTCAAGAGATTGGATGGGAAGAGTAAAGGA-CTTTAAAGCTGAA 1874
Query 1870 GGAAGCATCGGAGATGGCTTAGCACCCGTTCTTCACAAATCAGCACCTCAAGTGGCAT-T 1928
||||||||||||||||| || | |||| ||||||||||||| |||||| ||||||| | |
Sbjct 1875 GGAAGCATCGGAGATGGTTTGGAACCCATTCTTCACAAATCCGCACCTGAAGTGGC-TCT 1933
Query 1929 GTTCTCAGCTAGAGGACCCAACACCAAAGATTTCAGCTTTCAAGATGCTGATCTTCTTAA 1988
||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 1934 GTTTTCAGCTCGAGGACCCAACACTAAAGATTTCAGCTTTCAGGATGCTGATCTCCTCAA 1993
Query 1989 ACCGGATATTCTTGCACCCGGTTATCTCATATGGGCTGCTTGGTGTCCAAATGGAACAGA 2048
||| ||||||||||| ||||| | ||| || ||| |||| |||| | ||||||||| ||
Sbjct 1994 ACCAGATATTCTTGCTCCCGGCTCTCTGATTTGGTCTGCATGGTCTGAAAATGGAACTGA 2053
Query 2049 TGAACCCAATTATGTTGGTGAAGGATTTGCGCTAATATCAGGAACCAGCATGGCTGCACC 2108
|| | || |||||||| ||||||||||| |||| || || || ||||||||||||||
Sbjct 2054 CGAGGCTAACTATGTTGGCGAAGGATTTGCATTAATTTCTGGCACAAGCATGGCTGCACC 2113
Query 2109 ACACATAGCCGGG-ATAGCTGCGCTTGTGAAGCAGAAGCATCCTCAATGGAGCCCAGCTG 2167
|||||| || ||| |||||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 2114 ACACATTGC-GGGTATAGCTGCTCTGGTGAAACAGAAGCATCCTCAATGGAGTCCAGCTG 2172
Query 2168 CTATCAAATCAGCTTTGATGACAACCTCAACAGTCATAGATAGAGCAGGAAGGCTTCTTC 2227
||||||| |||||||||||||| || ||| ||||||||||| |||||||||||| ||| |
Sbjct 2173 CTATCAAGTCAGCTTTGATGACGACTTCAGCAGTCATAGATCGAGCAGGAAGGCCTCTCC 2232
Query 2228 AGGCACAGCAATATTCAGACACAGA-AGCTGTAACGCTTGTTAAAGCCACTCCTTTCGAT 2286
| |||||||||||||| || ||||| | | ||||| ||||||||||| |||||||| |||
Sbjct 2233 AAGCACAGCAATATTCTGAAACAGAGA-CAGTAACACTTGTTAAAGCAACTCCTTTTGAT 2291
Query 2287 TATGGAAGTGGTCATGTCAATCCAAGTGCTGCTTTAGATCCTGGTCTTATCTTTGATGCA 2346
|||||||||||||||||||||||||| |||||| |||| ||||| || ||||||||||||
Sbjct 2292 TATGGAAGTGGTCATGTCAATCCAAGCGCTGCTCTAGACCCTGGCCTCATCTTTGATGCA 2351
Query 2347 GGTTATGAGGACTATCTAGGATTCTTATGCACAACCCCAGGG-ATC-AGCGCCCACGAGA 2404
||||||||||||||| |||| ||||| || || || || ||| || | || || ||||
Sbjct 2352 GGTTATGAGGACTATATAGGGTTCTTGTGTACCACGCC-GGGTATTGAT-GCTCATGAGA 2409
Query 2405 TAAGAAA-TTACACAAACACGGCC-TGTAACTACGACAT-GAAACATCCTTCAAACTTTA 2461
||| ||| || ||||||||| || || || | | | || | |||||||||||||| |
Sbjct 2410 TAACAAACTT-CACAAACACT-CCATGCAATTTCAAAATAGTT-CATCCTTCAAACTTCA 2466
Query 2462 ATGCACCATCTATAGC-AGTTTCTCATCTAGTGGGGACCCAGACAGTAACAAGGAA-AGT 2519
| | ||||| ||||| | | |||||||| ||| | || || || || || || || |||
Sbjct 2467 ACACGCCATCCATAGCCA-TCTCTCATCTCGTGAGAACACAAACCGTGACGAG-AAGAGT 2524
Query 2520 TACTAATGTAGCAGAGGTAG-AAGAAACATACACAATAACAGCAAGGATGCAGCC-GTCT 2577
|| ||||| ||||| | || |||||||||||||||| ||| | |||||| |||| | |
Sbjct 2525 GACGAATGTTGCAGAAG-AGGAAGAAACATACACAATTACATCGAGGATGGAGCCAGCC- 2582
Query 2578 ATTGCCATCGAAGTGAACCCACCAGCGATGACACTCAGACCAGGCGC-TACTAGAACCTT 2636
|||||||||||||||| || || || |||||| | ||| ||||||| | ||||||||||
Sbjct 2583 ATTGCCATCGAAGTGAGTCCTCCTGCAATGACAGTTAGAGCAGGCGCCT-CTAGAACCTT 2641
Query 2637 CTCAGTCACTATGACCGTGAGATCGGTTTCTGGAG-TATACAGCTTCGGGGAGGTAA-AG 2694
||| || ||| | || |||||||| || | |||| | || |||||||| ||||| | |
Sbjct 2642 CTCCGTAACTCTAACAGTGAGATCAGTGACCGGAGCT-TATAGCTTCGGAGAGGTTACA- 2699
Query 2695 TTAAAAGGTAGCCGAGGGCATAAGGTCAGGATTCCGGTGGTGGCTCTAGGACATCGGCGA 2754
|| ||||| |||||||||||||| || | | || ||||| ||| | ||||| |||||
Sbjct 2700 TTGAAAGGAAGCCGAGGGCATAAAGTGACTCTCCCTGTGGTTGCTATGGGACAAAGGCGA 2759
Query 2755 TGAACAAA 2762
|||| |||
Sbjct 2760 TGAAGAAA 2767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109699905600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5