BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19180.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906784 jgi|Araly1|906784|Al_scaffold_0003_3912 771 0.0
> Ahg906784 jgi|Araly1|906784|Al_scaffold_0003_3912
Length=546
Score = 771 bits (417), Expect = 0.0
Identities = 504/546 (92%), Gaps = 6/546 (1%)
Strand=Plus/Plus
Query 27 ATGTCTCGATTGCTCTCAAAAACCCTAATTCCCAACGGAAGATTCCTCCTCCGTCGTTTC 86
||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1 ATGTCTCGATTGCTCTCCAAAACCCTAATTCCCCACGGAAGATTCTTCCTCCGTCGTTTC 60
Query 87 AACGAGCCGGCGATTACGAC-A-----CCACCAAACGTCGTCTGTTTCAGCCGCCGCTTT 140
|||||||| |||||||||| | ||||||| | |||||||||||||||||||||||
Sbjct 61 AACGAGCCAACGATTACGACGACGGCCCCACCAAGCCTCGTCTGTTTCAGCCGCCGCTTT 120
Query 141 TCATCCATCCCACAAGTCATCGAGCTTGAAATCGATTCTAAAAACGAAGCGGAAGCAGCA 200
||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 121 TCATCAATCCCACAAGTCATCGAGCTTGAAATCGATTCTAAAACCGAAGCCGAAGCCGCG 180
Query 201 ATTCTCAAAAAGCTAAACGAATTCGTACGAAGGATCATCGTTCATAATTCGACTCCAGAT 260
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ATTCTCAAGAAGCTTAACGAATTCGTCCGAAGGATCATCGTTCATAATTCGACTCCAGAT 240
Query 261 TGGCTTCCTTTTGCACCTGGCTCTTCCTTTTGGGTACCTCCTCATCAGATTACGGCTACA 320
||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 241 TGGCTACCCTTTGCACCTGGCTCTTCCTTTTGGGTACCACCTCATCAGATTACGGCCACC 300
Query 321 AAGATCGCCAATTTGGTCGATAAGGTGACTAATCCGTTGACGGAGGAAGAGTCTCTTTCG 380
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 301 AAGATCGCGAATTTGGTCGACAAGGTGACTAATCCGTTGACGGAGGAAGAATCTCTTTCT 360
Query 381 CTTTCGTCTCCTTATGGTTGGCCTTGTTCCTCTTTCTTCATTCCTCCTCCAGATGGTTCC 440
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 361 CTCTCGTCTCCTTATGGTTGGCCTTGTTCCTCTTTCTTCATTCCTCCTCCAGGTGATTCA 420
Query 441 TCATCTACACAAGAGGAAGAAGCTAGCGTGGAGTTGAAAATCCCGGGGAATGAGATGTTG 500
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 TCATCTACACAAGAGGTAGAAGCTAGCGTGGAGTTGAAAATCCCGGGGAATGAGATGCTG 480
Query 501 GAAGTGAAGCTAGCACATTATCCAGATCCTATTTACTCTTTTAAACCTGAAGATGGTGAA 560
||| | ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 481 GAAATCAAGCTAGCACATTATCCAGATCCTATTTACTTTTTTAAACCGGAAGACGGTGAG 540
Query 561 GAGTGA 566
||||||
Sbjct 541 GAGTGA 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5