BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19200.1
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931476 jgi|Araly1|931476|scaffold_303933.1 392 3e-108
Ahg906782 jgi|Araly1|906782|Al_scaffold_0003_3910 379 2e-104
> Ahg931476 jgi|Araly1|931476|scaffold_303933.1
Length=908
Score = 392 bits (212), Expect = 3e-108
Identities = 340/398 (85%), Gaps = 24/398 (6%)
Strand=Plus/Plus
Query 298 ttCGTTTTCGCCAGA-GATCATCTGCACAATCCTCGTCGTGTCAGAGTCCTCCTCTATGC 356
||||||| ||||| | ||||||| |||||||||||||||| | | ||||||||| |||||
Sbjct 117 TTCGTTTACGCCA-ATGATCATCCGCACAATCCTCGTCGTTTAATAGTCCTCCTTTATGC 175
Query 357 TAAGTCGGG-CTTCATCGTTACAATTTTGTCAAGGGGAAAGACTTGAAGGTCAGTAGCAT 415
||||| ||| |||||||||||||||| |||| | ||||||||||||||| ||||||||||
Sbjct 176 TAAGTTGGGCCTTCATCGTTACAATTGTGTCCATGGGAAAGACTTGAAGCTCAGTAGCAT 235
Query 416 ATCTACATACTTCACGTCC-C--------C-CG-G--------TACCGCATAACTTTCGA 456
|||||||||| ||| |||| | | | | |||||||||||||||||
Sbjct 236 ATCTACATACATCAAGTCCTCGGGTGTTACTAGTGCTACCTCTTACCGCATAACTTTCGA 295
Query 457 TGCCAAGGATCCTCGAGAGACCAGTGGTTCCCTTCAAACTTTTCATACTCATGTTAATGA 516
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 296 TGCCAAGGATCCTCGAGATACCAGTGGTTCCCTTCAAACTTTTCAAACTCATGTTAATGA 355
Query 517 AAGAAGTTATGGCAGCTTCCTTTTGACGTGCACTATTGCTTGTCCTTTAGGTGAACCTTT 576
||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||
Sbjct 356 AAGAACTTATGGCAGCTTACTTTTGTCGTGCACTATTGCTTGTCCTTTAGGTGAAG-TTA 414
Query 577 T-AGAGGTGGTGAAACCAAAAGAACCATGTTGGTTTCTCTCATACCTGAGTTGCCGCTAG 635
| |||| |||||||||||||| || ||| |||||||| ||||||||||||| ||
Sbjct 415 CCATAGGTAGTGAAACCAAAAGAGTCAACTTGCATTCTCTCAGGCCTGAGTTGCCGCCAG 474
Query 636 AGAATCCTTTCCAAGATGCTACAGACCGATTTTACGTG 673
|||||||||||||||||| |||||||||||||||||||
Sbjct 475 AGAATCCTTTCCAAGATGATACAGACCGATTTTACGTG 512
Score = 217 bits (117), Expect = 2e-55
Identities = 160/180 (89%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 760 CGCCTGTGATGCAACTTTCTACGTTAGGTACACAGACTCATGCCAGGCTCGGA-CTGGTG 818
||||| |||||||| ||||||| |||||||||||||||||||| |||||| || ||||||
Sbjct 683 CGCCTATGATGCAATTTTCTACATTAGGTACACAGACTCATGCAAGGCTC-GAGCTGGTG 741
Query 819 AGGATGCCGATCGCGTTGCTATAGTCAGAAGAATCTGGGATGAGCAGTTTG-ATGTCTTC 877
|||||| ||||||||||||||||||||||||||||||||||||| || | | |||||
Sbjct 742 AGGATGGCGATCGCGTTGCTATAGTCAGAAGAATCTGGGATGAGAAGCC-GCAAGTCTTT 800
Query 878 AAAATCGTGGGTCGTACTGAGAGCTAT-AGATCATTAGGGAATGGTGAATCCACCACGTC 936
| |||||||||||| |||||||||| | ||||| |||||||| |||||||||||||||||
Sbjct 801 AGAATCGTGGGTCGCACTGAGAGCT-TCAGATCGTTAGGGAACGGTGAATCCACCACGTC 859
> Ahg906782 jgi|Araly1|906782|Al_scaffold_0003_3910
Length=1269
Score = 379 bits (205), Expect = 2e-104
Identities = 276/310 (89%), Gaps = 6/310 (2%)
Strand=Plus/Plus
Query 755 CTTGGCGCCTGTGATGCAACTTTCTACGTTAGGTACACAGACTCATGCCAGGCTCGGACT 814
|||| ||||| |||||||| ||||||| |||||||||||||||||||| |||||||| ||
Sbjct 952 CTTGACGCCTATGATGCAATTTTCTACATTAGGTACACAGACTCATGCAAGGCTCGGGCT 1011
Query 815 GGTGAGGATGCCGATCGCGTTGCTATAGTCAGAAGAATCTGGGATGAGCAGTTTGATGTC 874
|||||||||| ||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1012 GGTGAGGATGTCGATCGCGTTGCTATAGTCAGAAGAATCTGGGATGAGAAGCCGGAAGTC 1071
Query 875 TTCAAAATCGTGGGTCGTACTGAGAGCTATAG-ATCATTAGGGAATGGTGAATCCACCAC 933
|| | |||||||||| | |||||||||| | | |||||||||||| ||||||||||||||
Sbjct 1072 TTTAGAATCGTGGGTTGCACTGAGAGCT-TCGGATCATTAGGGAACGGTGAATCCACCAC 1130
Query 934 GTCCCGGGAGACAGTTGTGCATTGCTCGAAGGACATAGATTCGATGGAACAATCTGACAT 993
||| |||||||||||| ||| | |||||||||||||||||||||||| ||||||||||||
Sbjct 1131 GTCTCGGGAGACAGTTTTGCCTGGCTCGAAGGACATAGATTCGATGGGACAATCTGACAT 1190
Query 994 GCATGATGGTTTCGACGGATATGTTGGGTTGTACTCAGAGCTGACAAACCTTGGAAGCTG 1053
| ||| | |||||||||| ||| ||||| |||||||||||| |||||||||||||||||
Sbjct 1191 G-ATG--G-TTTCGACGGACATGGTGGGTCGTACTCAGAGCTCACAAACCTTGGAAGCTG 1246
Query 1054 GCTCGTTGTC 1063
|||||| |||
Sbjct 1247 GCTCGTCGTC 1256
Score = 300 bits (162), Expect = 2e-80
Identities = 213/237 (90%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 440 TACCGCATAACTTTCGATGCCAAGGATCCTCGAGAGACCAGTGGTTCCCTTCAAACTTTT 499
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 646 TACCGCATAACTTTCGATGCCAAGGATCCTCGAGATACCAGTGGTTCCCTTCAAACTTTT 705
Query 500 CATACTCATGTTAATGAAAGAAGTTATGGCAGCTTCCTTTTGACGTGCACTATTGCTTGT 559
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 706 CAAACTCATGTTAATGAAAGAAGTTATGGCAGCTTCCTTTCAACGTGCACTATTGCTTGT 765
Query 560 CCTTTAGGTGAACCTTTT-AGAGGTGGTGAAACCAAAAGAACCATG-TTGGTTTCTCTCA 617
|||||||||||| || | ||||||||||||||| ||| || | ||| |||| |||
Sbjct 766 CCTTTAGGTGAAG-TTACCATAGGTGGTGAAACCAATAGAGTCA-GCTTGCATTCTTTCA 823
Query 618 TACCTGAGTTGCCG-CTAGAGAATCCTTTCCAAGATGCTACAGACCGATTTTACGTG 673
| |||||||||||| | || ||||||||| ||||||| |||||||||||||||||||
Sbjct 824 TGCCTGAGTTGCCGAC-AGTGAATCCTTTTCAAGATGATACAGACCGATTTTACGTG 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45556885815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5