BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G19210.1 Length=2646 Score E Sequences producing significant alignments: (Bits) Value Ahg343268 jgi|Araly1|343268|fgenesh1_pg.C_scaffold_3003031 346 5e-94 > Ahg343268 jgi|Araly1|343268|fgenesh1_pg.C_scaffold_3003031 Length=933 Score = 346 bits (187), Expect = 5e-94 Identities = 212/224 (95%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 1 ATGGTGCATTACAACTTTCTCTCGCTGATTAT-ATTTGCATGCTTCTTCGCTGTTTTTGT 59 |||||||| |||||||||||| |||||||| | ||| ||| ||||||||| ||||||||| Sbjct 1 ATGGTGCACTACAACTTTCTCCCGCTGATT-TCATTCGCAAGCTTCTTCGTTGTTTTTGT 59 Query 60 TCTTCTTGTTCGTGCTCAAGACCAATCAGGTTTTGTCAGTATAGATTGTGGTATACCTGA 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TCTTCTTGTTCGTGCTCAAGACCAATCAGGTTTTGTCAGTATAGATTGTGGTATACCTGA 119 Query 120 GGATTCAAGCTATAATGATGAAACAACAGACATAAAGTATGTTTCAGATGCTGCGTTTGT 179 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 120 GGATTCAAGCTATAATGATGAAACAACAGACATTAAGTATGTTTCAGATGCTGCTTTTGT 179 Query 180 TGAGTCTGGGACAATTCATAGCATAGATCCTGAGTTTCAAACAA 223 |||||| ||||||||||||| |||||||||||||||||||||| Sbjct 180 TGAGTCCGGGACAATTCATAATATAGATCCTGAGTTTCAAACAA 223 Score = 189 bits (102), Expect = 9e-47 Identities = 125/136 (92%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 502 AAAAACAGAGGAACTCCGTTCCTGTCTGCGTTAGAAATCAGGCTCCTGAAGAGTAATACA 561 ||||| | ||||||||| ||| |||||| ||||||| ||||||||||||||||| ||||| Sbjct 222 AAAAA-A-AGGAACTCCATTCTTGTCTGTGTTAGAACTCAGGCTCCTGAAGAGTGATACA 279 Query 562 TACGAGACTCCTTATGATTCACTTATTCTGTTTAAAAGATGGGATCTTGGGGGACTCGGT 621 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 280 TACGAGACTCCTTATGATTCACTTATGCTGTTTAAAAGATGGGATCTTGGGGGGCTCGGT 339 Query 622 GCTCTTCCCGTCAGGT 637 | |||||| ||||||| Sbjct 340 GATCTTCCTGTCAGGT 355 Score = 95.3 bits (51), Expect = 2e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 88 GGTTTTGTCAGTATAGATTGTGGTATACCTGAGGATTCAAGCTATAATGATGAAACAACA 147 ||||||||||||||||||||||||||||| || ||||||||||| ||||| || |||||| Sbjct 511 GGTTTTGTCAGTATAGATTGTGGTATACCGGAAGATTCAAGCTACAATGACGAGACAACA 570 Query 148 GACATAAAG 156 |||||||| Sbjct 571 AACATAAAG 579 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99796441900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5