BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G19210.1

Length=2646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg343268 jgi|Araly1|343268|fgenesh1_pg.C_scaffold_3003031           346    5e-94


> Ahg343268 jgi|Araly1|343268|fgenesh1_pg.C_scaffold_3003031
Length=933

 Score =  346 bits (187),  Expect = 5e-94
 Identities = 212/224 (95%), Gaps = 2/224 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGCATTACAACTTTCTCTCGCTGATTAT-ATTTGCATGCTTCTTCGCTGTTTTTGT  59
            |||||||| |||||||||||| |||||||| | ||| ||| ||||||||| |||||||||
Sbjct  1    ATGGTGCACTACAACTTTCTCCCGCTGATT-TCATTCGCAAGCTTCTTCGTTGTTTTTGT  59

Query  60   TCTTCTTGTTCGTGCTCAAGACCAATCAGGTTTTGTCAGTATAGATTGTGGTATACCTGA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TCTTCTTGTTCGTGCTCAAGACCAATCAGGTTTTGTCAGTATAGATTGTGGTATACCTGA  119

Query  120  GGATTCAAGCTATAATGATGAAACAACAGACATAAAGTATGTTTCAGATGCTGCGTTTGT  179
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  120  GGATTCAAGCTATAATGATGAAACAACAGACATTAAGTATGTTTCAGATGCTGCTTTTGT  179

Query  180  TGAGTCTGGGACAATTCATAGCATAGATCCTGAGTTTCAAACAA  223
            |||||| |||||||||||||  ||||||||||||||||||||||
Sbjct  180  TGAGTCCGGGACAATTCATAATATAGATCCTGAGTTTCAAACAA  223


 Score =  189 bits (102),  Expect = 9e-47
 Identities = 125/136 (92%), Gaps = 2/136 (1%)
 Strand=Plus/Plus

Query  502  AAAAACAGAGGAACTCCGTTCCTGTCTGCGTTAGAAATCAGGCTCCTGAAGAGTAATACA  561
            ||||| | ||||||||| ||| |||||| ||||||| ||||||||||||||||| |||||
Sbjct  222  AAAAA-A-AGGAACTCCATTCTTGTCTGTGTTAGAACTCAGGCTCCTGAAGAGTGATACA  279

Query  562  TACGAGACTCCTTATGATTCACTTATTCTGTTTAAAAGATGGGATCTTGGGGGACTCGGT  621
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  280  TACGAGACTCCTTATGATTCACTTATGCTGTTTAAAAGATGGGATCTTGGGGGGCTCGGT  339

Query  622  GCTCTTCCCGTCAGGT  637
            | |||||| |||||||
Sbjct  340  GATCTTCCTGTCAGGT  355


 Score = 95.3 bits (51),  Expect = 2e-18
 Identities = 63/69 (91%), Gaps = 0/69 (0%)
 Strand=Plus/Plus

Query  88   GGTTTTGTCAGTATAGATTGTGGTATACCTGAGGATTCAAGCTATAATGATGAAACAACA  147
            ||||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||||
Sbjct  511  GGTTTTGTCAGTATAGATTGTGGTATACCGGAAGATTCAAGCTACAATGACGAGACAACA  570

Query  148  GACATAAAG  156
             ||||||||
Sbjct  571  AACATAAAG  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 99796441900


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5