BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19250.1
Length=3015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906456 jgi|Araly1|906456|Al_scaffold_0003_3584 226 8e-58
> Ahg906456 jgi|Araly1|906456|Al_scaffold_0003_3584
Length=762
Score = 226 bits (122), Expect = 8e-58
Identities = 155/171 (91%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 2576 TGATGAGTAAGAAGGTGGGCTCTAAGATATTTAAATAAGGTCTCTCTCAACAACCTCACT 2635
||| ||||| ||||||||||| ||||||| |||| ||||| ||||||||||||||||||
Sbjct 506 TGAGGAGTAGGAAGGTGGGCTTTAAGATAGCTAAACAAGGTATCTCTCAACAACCTCACT 565
Query 2636 ATTATAAGGCA--CTCTGAAAATTCTGGGGCTATAGCAATCAACGAGGACAAGACTGAGA 2693
||| ||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 566 ATTCTAAGGCATCCTCTGAAAACTCTGGGGCTATAGCAATCAACGAGAACAAAACTGAGA 625
Query 2694 TTAATCAACTTCGAGATTCTGCAAACGAGACTGCTTCACTCAGCAGGCAAG 2744
|||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 626 TTAATCAACTTCAAGATTCCACAAACGAGACTGCTTCACTCAGCAGGCAAG 676
Score = 93.5 bits (50), Expect = 8e-18
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 2928 ATGAGCTTAAAGCAACTTCTAGAAGACAAAGAGACAAGAAGAGGACGAGTTTGAAGCACT 2987
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 701 ATGAGCTTAATGCAACTTCTAGAAGACAAAGAGACAAGAAGAAGACGACTTTGAAGCAGT 760
Query 2988 AA 2989
||
Sbjct 761 AA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113851742305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5