BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19260.1
Length=2422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480540 jgi|Araly1|480540|fgenesh2_kg.3__3241__AT2G19260.1 3275 0.0
> Ahg480540 jgi|Araly1|480540|fgenesh2_kg.3__3241__AT2G19260.1
Length=2342
Score = 3275 bits (1773), Expect = 0.0
Identities = 2180/2369 (92%), Gaps = 58/2369 (2%)
Strand=Plus/Plus
Query 17 agagagagagagagcgatagagcga--gagagagagagagCTTGCGTCAGTGGA-G-GAG 72
|||| || |||| | || ||||||| |||||||||| | |||||||||||||| | |||
Sbjct 11 AGAGCGATAGAGCGAGAGAGAGCGACGGAGAGAGAGA-AACTTGCGTCAGTGGAGGAGAG 69
Query 73 TCGGAAACTTGAGAAACTTGTTTAGAAGAAACGCCATAACTTGGA-GAAGCCCAAACGAG 131
||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 70 TCGGAAACTTGAGAAACTTGTGTAGAAGAAACGCCATAACTCGGAGGAAGCCCAAACGAG 129
Query 132 GATTTTGCTCTTGTGTATCTTCGTAGTCCATCTGGTGATCAGAAGGATATGAGCAT-TAC 190
||||| ||| |||||| |||||||||| ||||||| |||||| ||||||||| | | |||
Sbjct 130 GATTTAGCTATTGTGTCTCTTCGTAGT-CATCTGGAGATCAGGAGGATATGAAC-TCTAC 187
Query 191 CATTCCAGAGG-GACTACATGAAGAAGTCGACCAACAGATTCATTGGTACTTAGAGAAGT 249
|||||||| || |||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 188 CATTCCAG-GGAGACTACATGAAGAAGTTGACCAACAGATTCATCGGTACTTAGAGAATT 246
Query 250 AATGTGCTTTCAGATACTTTTTTGGTTTCTCAGGAAAACATGTTGGTGGAAAGTTCGTTC 309
||||||||||| ||||| |||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 247 AATGTGCTTTCCGATAC-TTTTGGGTTTATCAGGAAAAGATGTTGGTGGAAAGTTCGTTC 305
Query 310 AGCTCTTCTGTTGAAACTAGTCTACTGAACGTATCCGAGTATCAAGACCCATTTGCTGCA 369
|||||||| |||||| |||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 306 AGCTCTTCCGTTGAATCTAGTCTACTGAACGTGTCCGAGTATCAAGATCCATTTGCTACA 365
Query 370 TATGATTGGACGTCTCTTGCTGAATCTTATCAGATGATCCACAAAGTTCCCGAACAGTCT 429
||||||||| | || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 366 TATGATTGGGCTTCGCTTGCTGAAACTTATCAGATGATCCACAAAGTTCCCGAACAGTCT 425
Query 430 CAAGTAAGCTTTCT-TAAAAATGTTCCAGTCACTGATACTATGAATCTTGATGAATCAAA 488
|||||||||||| | |||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 426 CAAGTAAGCTTT-TGTAAAGCTGTTCCAGTCACTGATGCAATGAATCTTGATGAATCAAA 484
Query 489 ACATCCAAAACATCAAGAAAGTTGTTCAGAGAAATCTGTTATGCATAAGGTATCGGGAAA 548
||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 485 ACATCCAAAACATCAAGTAAGTTGTCCAGAGAAATCTGTTATGCACAAGGTATCGGGAAA 544
Query 549 GGCTCTGACTTCTCTTGTGTATCGTCGAAGGAAGAGGACCTTAATA-CCTGGGGGAACTG 607
||| |||||||||||||||||||||||||||||||||| ||||| | | |||||||||||
Sbjct 545 GGCCCTGACTTCTCTTGTGTATCGTCGAAGGAAGAGGAGCTTAA-AGCTTGGGGGAACTG 603
Query 608 AGGAACATAACCTAGGAAAAATCAGGAAACAGGATGATTCTCTTGATGACTCTATTGTCT 667
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 604 AGGAACATAACCTAGGAAAAACCAGGAAACAGGATGATTCACTTGATGACTCTATTGTCT 663
Query 668 CTTTATATAACCCTGAAGAAAGCACAAAAAGGAAAAATCGCTTCAACAACTGTCTTGTCT 727
||||| ||||| ||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 664 CTTTACATAACACTGGAGAAAGTACAAAAAGGAAAAATCGCTTCAACAACTGTCTTGTCT 723
Query 728 ATAGCCGGaaaaaaaGGAGAGGGGAATCCAGTTGTACTTTTACTGGAGAAACTACGATAA 787
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 724 ATAGCCGGAAAAAAAGGAGAGGGGAATCCAGTTGTACTTTTACAGGAGAAACTACGATAA 783
Query 788 GGGGTGATGGGCTTGATGATGCTTTTGTTTCTGAGCATGACTGTGGAGAAACCAGGAGAA 847
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 784 GGGGTGCTGGGCTTGATGATGCTTTTGTTTCTAAGCATGACTGTGGAGAAACCAGGAGAA 843
Query 848 GAGGCAATCGATCAGATGATTGCCTTGTGTATAGCAGGAAGAAAGGTAGAGTGAAATTTA 907
||||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||
Sbjct 844 GAGGCAATCGATCAGATAATTGTCTTGTGTATAGCAGAAAAAAAGGTAGAGTGAAATTTA 903
Query 908 ATAGTTGTAGTTTTAGCAAACATGTCACTGGACGAACCAAGATAAGCTATGATCAAGCTG 967
||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 904 ATAGTTGTACTTTTAGCAAACATGTCACTGGAGGAACCAAGATAGGCTGTGATCAAGCTG 963
Query 968 ACTCTTCTGCATGTAGCCAAATGGGACAGATAGTTAAAGCTGATAGTTCTTTAACTAGAC 1027
||||||||||||||||||| | ||||||| ||||||||||||||||| |||| ||| |||
Sbjct 964 ACTCTTCTGCATGTAGCCACAGGGGACAGGTAGTTAAAGCTGATAGTGCTTTTACTGGAC 1023
Query 1028 CTAAGCCTGGAGAAATCAAGAAAAGTGGTCATCAACTTGTTTACAGCCAAAGAAAGCAGT 1087
|||| ||||||||||||||||||||||||||||| | |||||||| |||||| |||||||
Sbjct 1024 CTAACCCTGGAGAAATCAAGAAAAGTGGTCATCATCCTGTTTACAACCAAAGCAAGCAGT 1083
Query 1088 TAGTGAAATCTAATGGGAGCTTTACTGAAAGTCATGTTGGAAAAACCAAGAGAAATGGAG 1147
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1084 TAGTGAAATCTAATGGGAGTTTTACTGAAAGTCATGTTGGGAAAACCAAGAGAAATGGAG 1143
Query 1148 ATAGATCTGAGGTCTTACTTACGTATAGCCGGAGGAAGAAGAGTGGGAAATCTATTGGTG 1207
| | |||||| ||||| || || ||||||||||||||| |||| || |||||| ||||||
Sbjct 1144 AAAAATCTGATGTCTTGCTGACATATAGCCGGAGGAAGCAGAGAGGCAAATCTGTTGGTG 1203
Query 1208 TTCGGGTTAATGGCTTTCTAGTTTATACCCGGAAGAAGTTAAAATTCAGAGGACCTTTTG 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TTCGGGTTAATGGCTTTCTAGTTTATACCCGGAAGAAGTTAAAATTCAGAGGACCTTTTG 1263
Query 1268 CTAGACGTGACCTAAGCGAAACCAAGAA-AAATGGTGATCAACGTTCTACTGTCAGTTCT 1326
|||||| ||||||||| |||||||| || |||||||||||||| || || ||
Sbjct 1264 CTAGACATGACCTAAGAGAAACCAA-AACAAATGGTGATCAAC-TT-----GT-AG---- 1311
Query 1327 CGAGAACTTTTAGACGATACCCAAGTTACCGAAGTGACATGTTCTTCTGATGGAACAAAT 1386
| | || |||||| |||||||||||||||| |||||| |||||||| |||
Sbjct 1312 --A----T----GA---TACCCAGGTTACCGAAGTGACATATTCTTCAGATGGAACTAAT 1358
Query 1387 GACAGCTGCTCCTCATTGAAATCCAGTTCTGAAGTTAATTCAACTTCTAGTA-AATCTCG 1445
||||||||||| |||||||||||||||||||||||| |||||| ||| |||| || || |
Sbjct 1359 GACAGCTGCTCGTCATTGAAATCCAGTTCTGAAGTTGATTCAAGTTCGAGTACAA-CTGG 1417
Query 1446 GGAAGATGATTGCTATTCCTCTGATTCTGGGGTGTCTGAGACAGATACAGATGGTAGTAG 1505
||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct 1418 GGAAGATGATTGCTATTCCTCTGATGCTGTGGTGTCTGAGACAGATACAGACGGTAGTAG 1477
Query 1506 CAGCCCTTTCAGGCAGTGTAAACATTGTGATAAGCCAGGAACTGTCGAAAAGATGCTAAT 1565
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 CGGCCCTTTCAGGCTGTGTAAACATTGTGATAAGCCAGGAACTGTCGAAAAGATGCTAAT 1537
Query 1566 TTGTGATGAATGTGAAGAAGCATATCATACACGCTGCTGCGGTGTTCAAATGAAAGACGT 1625
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct 1538 TTGTGATGAATGTGAAGAAGCATATCATACAATCTGCTGCGGTGTACAAATGAAAGACAT 1597
Query 1626 TGCAGAGATAGATGAGTGGCTCTGTCCATCCTGTTTGAAAAATCAGTCATCAAAGACCAA 1685
|||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1598 CGCAGGGATAGATGACTGGCTCTGTCCATCCTGTTTGAAAAATAAGCCATCAAAGACCAA 1657
Query 1686 GACTAAGGGGAGAATTTCACATGAACGGAAATGGAGAGTTACAGTACCATTTGTAATAGG 1745
||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1658 GACGAAGGGGAGAATTTCACGGGAACGGAAATGGAGAGTTACAGTACCATTGGTAATAGG 1717
Query 1746 AATTAGAATAGGAAAAATGTTTCAAGCAGATGTTCCAGACTGGTCAGGTCCAACAATGAG 1805
| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 AGTTCGAATAGGAAAAAAGTTTCAAGCAGATGTTCCAGACTGGTCAGGTCCAACAATGAG 1777
Query 1806 TGATACTTCTTTTGTGGGTGAACCATTGGAAATTGGCCAGTCAGAATACATGCATGATCT 1865
|||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||
Sbjct 1778 TGATACTTCTTTTGTGGGTGAACCCTTGGAAATTGATCAGTCAGAATACACGCATGATCT 1837
Query 1866 CAAGAAGGCCAAGAATAGTAAGAAACAATGTTCTGCAGTGAATTGGCTTCAATGCAGAGA 1925
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1838 CAAGAAGGCCAAGAATAGTAAGAAACAATGTTCTGCAGTGAATTGGCTTCAGTGCAGAGA 1897
Query 1926 AGAAGATACTAATGGAGTTATCTGCGGAAAGTGGCGTAGGGCCCCTCGTTCAGAGGTACA 1985
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 GGAAGATAGTAATGGAGATATCTGCGGAAAGTGGCGTAGGGCCCCTCGTTCAGAGGTACA 1957
Query 1986 AACCAAAGACTGGGAATGCTTCTGCTGCTTCTCTTGGGATCCATCACGTGCTGACTGTGC 2045
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1958 AACCAAAGACTGGGAATGCTTCTGCTGCGTCTTTTGGGATCCATCACGTGCTGACTGTGC 2017
Query 2046 CGTCCCTCAGGAACTGGAGACAAGTGAGATCCTTAAACAACTCAAGTACATCAAGATGCT 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 CGTCCCTCAGGAACTGGAGACAAGTGAGATCCTTAAACAACTCAAGTACATCAAGATGCT 2077
Query 2106 TAGACCTCGATCAGACGCCAAAAAGCGAAAACTAGGACCAAAGGGTCGAAGCAGATCACA 2165
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2078 AAGACCTCGATCAGACGCCAAAAAGCGAAAGCTAGGAGCAAAGGGTCGAAGCAGATCACA 2137
Query 2166 TATCAAAGGAAAATCTTGATGGACACAATCAAAATGCATATGCTTTTGGATTAGAGAGAC 2225
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2138 TAACAAAGGAAAATCTTGATGGACACAATCAAA-TGCATATGCTTTTGGATTAGAGA--C 2194
Query 2226 CTTAGAAACTAGAAAGGTAA-CATCAGAAATTTTTTGTGAAGCGCCAATGCTTTTTGTAC 2284
|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 2195 CTTAGAAACTAGAAAGGTAAAC-TCAGAAATTTTTTGTGAAGCGCCAATGAGTTTTGTAC 2253
Query 2285 ---T----A--CTTGAGGATATCAAGTTGCTTTCTAAGTGACTAATTAGGTTCAGATCTT 2335
| | |||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 2254 CCCTTGCGAAACTTGAGGATATCAAGTTGCTCTATAAGTGATTAATTAGGTTCAGATCTT 2313
Query 2336 TTGTTAGCTCCCAAAACAGGAGTAGTGAA 2364
|||||||||||||||||||||||||||||
Sbjct 2314 TTGTTAGCTCCCAAAACAGGAGTAGTGAA 2342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264227020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5