BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19270.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319616 jgi|Araly1|319616|fgenesh1_pm.C_scaffold_3002632 1664 0.0
> Ahg319616 jgi|Araly1|319616|fgenesh1_pm.C_scaffold_3002632
Length=1083
Score = 1664 bits (901), Expect = 0.0
Identities = 1034/1094 (95%), Gaps = 25/1094 (2%)
Strand=Plus/Plus
Query 18 ATGGACTCTCTGGTAGCGAGCTACGCTTCGTCGGACGAAGAAGAAGATCTTCAACCACGT 77
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACTCTCTGGTCGCGAGTTACGCGTCGTCGGACGAAGAAGAAGATCTTCAACCACGT 60
Query 78 CGAGAAGCTTTCACTGTAAAATCCTCAGAA-C-----CTTCCGCTTCGTCTCTATTCTCA 131
|||||||||||||||| |||||||||||| | |||| |||||||||| ||||||
Sbjct 61 AGAGAAGCTTTCACTGTGAAATCCTCAGAACCTAGAACTTCTTCTTCGTCTCTGTTCTCA 120
Query 132 GCTATTCCTCAACCTAAAGAACTCAAATCCTCCGAAGATGGTGATTTAGGctcatcttcc 191
|||||||||||||| |||| ||||||||||||||||||||||||||| || |||||||||
Sbjct 121 GCTATTCCTCAACCCAAAGTACTCAAATCCTCCGAAGATGGTGATTTTGGTTCATCTTCC 180
Query 192 tctcgaggaaaatcttcttctttcctctcatctctccctcctcccaaatcctcAATTTCA 251
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCTCGAGGAAAATCTTCTCCGTTCCTCTCCTCTCTCCCTCCTCCCAAATCCTCAATTTCA 240
Query 252 CGGaaaaaaaaTCC--CAATCCGTCGTCAATTCCGAAACGTGTCGTCCAGATCAGGCTTC 309
|||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGGAAACAAAATCCGGC-A-CCGTCGTCAATTCCGAAACGTGTCGTCCAGATCAGGCTTC 298
Query 310 CAGTAAACCCTAGACCGAGCAATC-T--TGACGACGAAGACGACGAAGAAGAAGAGAAAG 366
| |||||||||||||||||||||| | ||| || |||||||||||||||||||||||||
Sbjct 299 CCGTAAACCCTAGACCGAGCAATCTTGATGATGAAGAAGACGACGAAGAAGAAGAGAAAG 358
Query 367 CTAGGAAGAAGCGTAAACAGATGGAATCTGCTTCCGCATCTCACGATTCATCAGTAAGAT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 CTAGGAAGAAGCGTAAACAGATGGAATCTGCTTCCGCATCTCACGATTCATCAGTGAGAT 418
Query 427 CGTTCTTATCCGCCATGCCTGCACCTAAAAGCTCACAAACACTAGGTGCTCTTCCTTCAT 486
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 419 CGTTCTTATCCGCCATGCCTGCACCTAAAAGCTCGCAAACATTAGGTGCTCTTCCTTCAT 478
Query 487 TGGGATCAGGATCAGGTCGAAGATCGAATCTCGAAACAGAAACACCTT-CAATTGCATTT 545
||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| | ||
Sbjct 479 TGGGATCAGGATCAGGTCGAAGATCGAATCTCGAAACGGAAACA-CTTGCAATTGTAATT 537
Query 546 CCTCAAACGGATTCAGGTATTAGTGATCAACAAAACCAGAGCTATGAATCGTTTAGTCAT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCTCAAACGGATTCAGGTATTAGTGATCAACAAAACCAGAGCTATGAATCGTTTAGTCAT 597
Query 606 AGTAATAGCGAAACGGAACAAA-TCGTTGGAGTAGATAACTATTATGCTACTGGTTATGA 664
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct 598 AGTAATAGCGAAACGGAACAAAAT-GTTGGAGTAGATAACTATTATGCTGCTGGTTATG- 655
Query 665 TGGTGGATACGAAAC-AATTCCTAGTGGTAGTAGTGTGGGATATGATGGTAGTAGCTATG 723
| |||||||||||| ||| |||||||||||| ||| || ||||||||||||||||||||
Sbjct 656 -G-TGGATACGAAACGAAT-CCTAGTGGTAGT-GTG-GG-ATATGATGGTAGTAGCTATG 709
Query 724 GAGGTAATACTTGGAATGGTGGTGGGTTTGAGGCAATGACGGGATTGCCTGAAGCGGTTG 783
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 710 GAGGTAATACTTGGAATGGTGGTGGGTTTGAGGCAACAACGGGATTGCCCGAAGCGGTTG 769
Query 784 TAGCTATGGATAGTGGTGCGAGGAGAGGAAGGAGAGGGAGGAATCAGATGCCAGAGATTG 843
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 770 TAGCTATGGATAGTGGTGCGAGGAGAGGAAGGAGAGGGAGGAACCAGATGCCAGAGATTG 829
Query 844 TTGAGGTTAAGCAAGATGAGCTTATGAAGAATAGGCCACGAGTTGATCAGGTTAAATCTA 903
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 830 TTGAGGTTAAGCAAGATGAGCTTATGAAGAATAGGCCAAGAGTTGATCAGGTTAAATCTA 889
Query 904 CTGGAATCGCCTTTGGACCTGCGTATCAGCCGGTAACATCTTCATCTAAAGGGAAAGTGT 963
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 890 CTGGAATCGCCTTTGGACCTGCGTATCAGCCGGCAACATCTTCATCTAAAGGGAAAGTGT 949
Query 964 CAAAGCTTCACAAGAGGAAGCATCAAATCACTGCGTTGTTCATGGACATGAAGCACAAGG 1023
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 950 CAAAGCTTCACAAGAGGAAGCATCAAATCACTGCGTTATTCATGGACATGAAGCACAAGG 1009
Query 1024 AGTCGGAGTTGACAGAGAGACGTTCTAGAGGATTGCTCACGAAAGCCGAGACACAAGCTA 1083
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1010 AGTCGGAGTTGACAGAGAGACGTTCTAGAGGATTGCTCACAAAAGCCGAGACACAAGCTA 1069
Query 1084 AATACGGATGGTGA 1097
|||| |||||||||
Sbjct 1070 AATATGGATGGTGA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5