BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19280.1
Length=3454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343263 jgi|Araly1|343263|fgenesh1_pg.C_scaffold_3003026 3157 0.0
> Ahg343263 jgi|Araly1|343263|fgenesh1_pg.C_scaffold_3003026
Length=2268
Score = 3157 bits (1709), Expect = 0.0
Identities = 2043/2198 (93%), Gaps = 47/2198 (2%)
Strand=Plus/Plus
Query 12 TCGtctctaccaatctctccatctctctctctGCTCGCCGTCGCCGTTATTATTCCGGGC 71
||||||||||| |||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 97 TCGTCTCTACCTCTCTCTCTATCTCTCTCT-T-CTCGCCGTCGCCGTTATTATTCCGGGC 154
Query 72 GATCAAAATTAAGACAAGCCATTTTATAACTTGTGACCAGTCCCTGTTTATGTGGGTTTC 131
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 155 GATCAAAATTAAGACAAGCCA--TTATAACTTGTGACCAGTCCCTGTTTATGTGGGTTTC 212
Query 132 AATCTTTAACCTCAAGTCTTCTGGATTGAATCATT-TTTGTACAAGAACCAAGGCTTTTC 190
|||| | ||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct 213 AATCCTAAACCTCAAGTCTTCTGGTTTGAATCATTGCTT-TACAAGAACCAAGGCTTTTC 271
Query 191 GATATTTCTGGTGTAGGACCTTTTCTCTTGCTTCGTTGTCTGAGAATAACTCAAGATTCC 250
|||||||||||| | || | | | | | | | || ||| |||||| |
Sbjct 272 GATATTTCTGGT-CAAGA-----AC-AAAG----GCT-T-T-ACAAGAAC-AAAGATTTC 316
Query 251 AGACTGATTCTAGTAGGCTACCTTACTCTGGATCACGGTACTA----T-C-AT------A 298
||| ||||||| ||| |||| |||||||||||||||||||||| | | || |
Sbjct 317 AGAGTGATTCTGGTAAGCTAACTTACTCTGGATCACGGTACTATGTTTCCGATGCAAGGA 376
Query 299 ---GTTCAAGTAAGCATTTTGGTG-AAGATTTTGTTTCGATTCTGAAGAATATTGATGTC 354
||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||
Sbjct 377 TTGGTTCAAGTAAGCATTTTGGTGAAAG-TTTTGATACGATTCTGAAGAATATTGATGTC 435
Query 355 CCAAGGGATTGTGTTGAGACTATTAGAAATGTGCTTGTGAAACACAATTGGATACAGAAA 414
|| || || |||||||| |||||||||||||||||| |||||||| |||||||||||||
Sbjct 436 CCTAGTGACTGTGTTGAAACTATTAGAAATGTGCTTACGAAACACAGTTGGATACAGAAA 495
Query 415 TATGAGAGTGGGTTTAGTACTGAGCTTGATCAATACACTGTCATTAGAATTTTGGATGAT 474
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 496 TATGAGAGTGGGTTTAGTACTGAACTTGATCAATACAATGTCATTAGAATTTTGGATGAT 555
Query 475 TTGTTTGAGGAGACTTTGGATGCATCTATTGTTCTATACTTCTTTAGGTGGTCAGAGTTG 534
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 556 TTGTTTGAGGAGACTTTGGATGCATCTATTGCTCTATACTTCTTTAGATGGTCAGAGTTG 615
Query 535 TGGATTGGTGTTGAGCACTCGAGCAGGTCTATCAGCAGGATGATTCATATTTTGGTATCT 594
||||||||||||| |||||||||||||||||||||| | |||||||||||| |||| |||
Sbjct 616 TGGATTGGTGTTGCGCACTCGAGCAGGTCTATCAGCCGAATGATTCATATTCTGGTGTCT 675
Query 595 GGAAATATGAATTATAGAGCTGTAGATATGCTTCTCTGTCTGGTGAAGAAATGTAGTGGA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GGAAATATGAATTATAGAGCTGTAGATATGCTTCTCTGTCTGGTGAAGAAATGTAGTGGA 735
Query 655 GAAGAAAGGTCTTTGTGTTTAGTTATGAAGGATCTTTTTGAAACTCGTATTGATCGTAGG 714
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct 736 AAAGAAAGGTCCTTGTGTTTAGTTATAAAGGATCTATTTGAAACTCGTATTGATCGTCGG 795
Query 715 GTTTTAGAGACTGTGTTTAGCATACTGATTGATTGTTGCATTAGAGAGAGAAAGGTAAAC 774
|||||||| ||||||||| | || ||||||||||||||||||| |||||| |||||| ||
Sbjct 796 GTTTTAGAAACTGTGTTTTGTATGCTGATTGATTGTTGCATTAAAGAGAGGAAGGTAGAC 855
Query 775 ATGGCCCTGAAGCTAACTTACAAAGTGGACCAGTTTGGCATCTTTCCTTCACGAGGGGTT 834
||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 856 ATGGCCCTGAAACTAACCTACAAAATAGACCAGTTTGGCATCTTTCCTTCACGAGGGGTT 915
Query 835 TGTATTTCGTT-GCTTAAGGAAATTCTACGAGTTCATGGCTTGGAGTTAGCTCGGGAATT 893
||||||||||| | || ||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 916 TGTATTTCGTTAG-TTGAGGAAATTCTACGAGCTCATGGGTTGGAGTTAGCTCGGGAATT 974
Query 894 TGTTGAGCACATGCTTAGTCGAGGGAGGCATCTAAATGCTGCTGTCCTTAGCCTATTCAT 953
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 975 TGTTGAGCACATGCTTAGTCGAGGGAGGCATCTAAATGCTGCCGTTCTTAGCCTATTCAT 1034
Query 954 AAGGAAGTATTGCTCGGATGGCTATTTTGATAAAGGTTGGGAATTGCTTATGGGAATGAA 1013
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1035 AAGGAAGTATTGCTCTGATGGCTACTTTGATAAAGGTTGGGAATTGCTTATGGGAATGAA 1094
Query 1014 ACACTACGGCATCAGACCTGATATTGTGGCATTTACAGTTTTTATTGATAAATTGTGTAA 1073
| |||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1095 AGACTATGGCATCAGACCTGACATTGTGGCATTTACAGTTTTCATTGATAAATTGTGTAA 1154
Query 1074 GGCAGGGTTTCTAAAAGAAGCGACTTCGGTATTGTTTAAACTCAAACTCTTTGGTATCTC 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GGCAGGGTTTCTAAAAGAAGCGACTTCGGTATTGTTTAAACTCAAACTCTTTGGTATCTC 1214
Query 1134 TCAGGATTCTGTATCCGTCAGTTCTGTTATCGACGGGTTCTGTAAGGTGGGGAAACCAGA 1193
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1215 TCAGGATTCTGTATCCGTCAGCTCTGTTATCGACGGGTTCTGTAAGGTAGGGAAACCAGA 1274
Query 1194 GGAAGCCATTAAGCTCATTCATTCTTTTCGTCTTAGACCAAACATTTTTGTGTACAGTAG 1253
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1275 GGAAGCCATTAAGCTCATTCATTCTTTTCGCCTTAGACCAAACATTTTTGTGTACAGTAG 1334
Query 1254 CTTTCTGTCAAATATATGTTCCACAGGAGACATGCTCAGAGCTTCTACCATATTTCAGGA 1313
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1335 CTTTCTGTCAAATATATGTAGCACAGGAGACATGCTCAGAGCCTCTACCATATTTCAGGA 1394
Query 1314 GATTTTCGAGTTGGGACTCCTTCCTGATTGTGT-TTGTTATACTACTATGATTGATGGGT 1372
|||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1395 GATTTTTGAGTTGGGACTCCTTCCTGATTGT-TATTGTTATACTACTATGATTGATGGGT 1453
Query 1373 ATTGTAATCTAGGCAGAACTGATAAAGCTTTTCAATACTTCGGGGCGCTGTTGAAAAGCG 1432
|||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1454 ATTGTACTCTAGGCAGAACAGATAAAGCTTTTCAATTTTTCGGGGCGCTGTTGAAAAGCG 1513
Query 1433 GGAACCCGCCATCCTTGACAACATCTACAATACTTATTGGAGCTTGCAGCAGGTTTGGAA 1492
|||||||||||||||| | ||||| |||| |||||||||| |||||||||| ||||||||
Sbjct 1514 GGAACCCGCCATCCTTAATAACATATACACTACTTATTGGTGCTTGCAGCAAGTTTGGAA 1573
Query 1493 GCATAAGTGATGCAGAATCTGTGTTTCGGAATATGAAAACTGAAGGTCT-CAAACTGGAT 1551
|||||||||||||||||||||||||||||| |||||||||||||||| | || | ||||
Sbjct 1574 GCATAAGTGATGCAGAATCTGTGTTTCGGATTATGAAAACTGAAGGTTTGCATCC-GGAT 1632
Query 1552 GTCGTAACATATAACAATCTGATGCATGGGTATGGGAAGACACATCAGCTGAATAAAGTT 1611
|| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1633 GTTGTAACGTATAACAATCTGATGTATGGGTATGGGAAGACACATCAGCTGAATAAAGTA 1692
Query 1612 TTTGAGCTTATTGATGAGATGAGATCTGCTGGTATCTCTCCAGATGTTGCAACCTACAAT 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 TTTGAGCTTATTGATGAGATGAGATCTGCTGGTATCTCTCCAGATGTTGCAACCTACAAT 1752
Query 1672 ATTTTGATACATAGCATGGTTGTTAGAGGATATATCGATGAAGCAAATGAAATTATCAGT 1731
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1753 ATTTTGATACATAGCATGGTGGTTAGAGGATATGTCGATGAAGCAAATGAAATTATCAGT 1812
Query 1732 GAGCTTATCCGACGAGGCTTTGTTCCTAGTACATTAGCATTCACAGATGTGATTGGTGGG 1791
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1813 GAGCTTATCCGACGAGGCTTTGTTCCTAGTGCATTAGCATTCACAGATGTGATTGGTGGG 1872
Query 1792 TTCTCGAAGAGAGGGGATTTTCAGGAAGCGTTTATTTTGTGGTTCTACATGGCTGATCTT 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 TTCTCGAAGAGAGGGGATTTTCAGGAAGCGTTTATTTTGTGGTTCTACATGGCTGATCTT 1932
Query 1852 AGAATGAAACCTGATGTTGTAACATGCAGTGCATTACTTCATGGCTATTGCAAAGCGCAG 1911
||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1933 AGAGTGAAACCTGATGTTGTAACATGCAGTGCATTACTTCATGGTTATTGCAGAGCGCAG 1992
Query 1912 AGAATGGAGAAAGCTATTGTTTTGTTTAATAAGTTGCTTGATGCGGGGTTAAAGCCAGAT 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 AGAATGGAGAAAGCTATTGTTTTGTTTAATAAGTTGCTTGATGCGGGGTTAAAGCCAGAT 2052
Query 1972 GTTGTTTTGTATAATACGCTCATCCATGGATATTGCAGTGTAGGAGATATTGAGAAAGCA 2031
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 GTGGTTTTGTATAATACGCTCATCCATGGATATTGCAGTGTAGGAGATATTGAGAAAGCA 2112
Query 2032 TGTGAGTTGATTGGTTTGATGGTTCAAAGGGGAATGCTTCCAAATGAGAGTACCCATCAC 2091
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2113 TGTGAGTTGATTGGTTTGATGGTTCGAAGGGGAATGCTTCCAAATGAGAGTACCCATCAC 2172
Query 2092 GCACTTGTTTTGGGGCTTGAGGGAAAGAGGTTTGTGAACTCAGAA-ACGCATGCATCCAT 2150
||||||||| ||||||||||||||||| |||| ||||||| ||| | ||||||||||||
Sbjct 2173 GCACTTGTTGTGGGGCTTGAGGGAAAGCGGTTCATGAACTCGGAAGA-GCATGCATCCAT 2231
Query 2151 GCTACTTGAAGAAATTATTGTTGCAAAATGGCACCTGA 2188
|||||||||||||||| | |||||||| |||| |||||
Sbjct 2232 GCTACTTGAAGAAATTGTAGTTGCAAA-TGGCGCCTGA 2268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130423302671
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5