BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G19280.1 Length=3454 Score E Sequences producing significant alignments: (Bits) Value Ahg343263 jgi|Araly1|343263|fgenesh1_pg.C_scaffold_3003026 3157 0.0 > Ahg343263 jgi|Araly1|343263|fgenesh1_pg.C_scaffold_3003026 Length=2268 Score = 3157 bits (1709), Expect = 0.0 Identities = 2043/2198 (93%), Gaps = 47/2198 (2%) Strand=Plus/Plus Query 12 TCGtctctaccaatctctccatctctctctctGCTCGCCGTCGCCGTTATTATTCCGGGC 71 ||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||| Sbjct 97 TCGTCTCTACCTCTCTCTCTATCTCTCTCT-T-CTCGCCGTCGCCGTTATTATTCCGGGC 154 Query 72 GATCAAAATTAAGACAAGCCATTTTATAACTTGTGACCAGTCCCTGTTTATGTGGGTTTC 131 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 155 GATCAAAATTAAGACAAGCCA--TTATAACTTGTGACCAGTCCCTGTTTATGTGGGTTTC 212 Query 132 AATCTTTAACCTCAAGTCTTCTGGATTGAATCATT-TTTGTACAAGAACCAAGGCTTTTC 190 |||| | ||||||||||||||||| |||||||||| || |||||||||||||||||||| Sbjct 213 AATCCTAAACCTCAAGTCTTCTGGTTTGAATCATTGCTT-TACAAGAACCAAGGCTTTTC 271 Query 191 GATATTTCTGGTGTAGGACCTTTTCTCTTGCTTCGTTGTCTGAGAATAACTCAAGATTCC 250 |||||||||||| | || | | | | | | | || ||| |||||| | Sbjct 272 GATATTTCTGGT-CAAGA-----AC-AAAG----GCT-T-T-ACAAGAAC-AAAGATTTC 316 Query 251 AGACTGATTCTAGTAGGCTACCTTACTCTGGATCACGGTACTA----T-C-AT------A 298 ||| ||||||| ||| |||| |||||||||||||||||||||| | | || | Sbjct 317 AGAGTGATTCTGGTAAGCTAACTTACTCTGGATCACGGTACTATGTTTCCGATGCAAGGA 376 Query 299 ---GTTCAAGTAAGCATTTTGGTG-AAGATTTTGTTTCGATTCTGAAGAATATTGATGTC 354 ||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||| Sbjct 377 TTGGTTCAAGTAAGCATTTTGGTGAAAG-TTTTGATACGATTCTGAAGAATATTGATGTC 435 Query 355 CCAAGGGATTGTGTTGAGACTATTAGAAATGTGCTTGTGAAACACAATTGGATACAGAAA 414 || || || |||||||| |||||||||||||||||| |||||||| ||||||||||||| Sbjct 436 CCTAGTGACTGTGTTGAAACTATTAGAAATGTGCTTACGAAACACAGTTGGATACAGAAA 495 Query 415 TATGAGAGTGGGTTTAGTACTGAGCTTGATCAATACACTGTCATTAGAATTTTGGATGAT 474 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 496 TATGAGAGTGGGTTTAGTACTGAACTTGATCAATACAATGTCATTAGAATTTTGGATGAT 555 Query 475 TTGTTTGAGGAGACTTTGGATGCATCTATTGTTCTATACTTCTTTAGGTGGTCAGAGTTG 534 ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 556 TTGTTTGAGGAGACTTTGGATGCATCTATTGCTCTATACTTCTTTAGATGGTCAGAGTTG 615 Query 535 TGGATTGGTGTTGAGCACTCGAGCAGGTCTATCAGCAGGATGATTCATATTTTGGTATCT 594 ||||||||||||| |||||||||||||||||||||| | |||||||||||| |||| ||| Sbjct 616 TGGATTGGTGTTGCGCACTCGAGCAGGTCTATCAGCCGAATGATTCATATTCTGGTGTCT 675 Query 595 GGAAATATGAATTATAGAGCTGTAGATATGCTTCTCTGTCTGGTGAAGAAATGTAGTGGA 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 676 GGAAATATGAATTATAGAGCTGTAGATATGCTTCTCTGTCTGGTGAAGAAATGTAGTGGA 735 Query 655 GAAGAAAGGTCTTTGTGTTTAGTTATGAAGGATCTTTTTGAAACTCGTATTGATCGTAGG 714 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| || Sbjct 736 AAAGAAAGGTCCTTGTGTTTAGTTATAAAGGATCTATTTGAAACTCGTATTGATCGTCGG 795 Query 715 GTTTTAGAGACTGTGTTTAGCATACTGATTGATTGTTGCATTAGAGAGAGAAAGGTAAAC 774 |||||||| ||||||||| | || ||||||||||||||||||| |||||| |||||| || Sbjct 796 GTTTTAGAAACTGTGTTTTGTATGCTGATTGATTGTTGCATTAAAGAGAGGAAGGTAGAC 855 Query 775 ATGGCCCTGAAGCTAACTTACAAAGTGGACCAGTTTGGCATCTTTCCTTCACGAGGGGTT 834 ||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||| Sbjct 856 ATGGCCCTGAAACTAACCTACAAAATAGACCAGTTTGGCATCTTTCCTTCACGAGGGGTT 915 Query 835 TGTATTTCGTT-GCTTAAGGAAATTCTACGAGTTCATGGCTTGGAGTTAGCTCGGGAATT 893 ||||||||||| | || ||||||||||||||| |||||| |||||||||||||||||||| Sbjct 916 TGTATTTCGTTAG-TTGAGGAAATTCTACGAGCTCATGGGTTGGAGTTAGCTCGGGAATT 974 Query 894 TGTTGAGCACATGCTTAGTCGAGGGAGGCATCTAAATGCTGCTGTCCTTAGCCTATTCAT 953 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 975 TGTTGAGCACATGCTTAGTCGAGGGAGGCATCTAAATGCTGCCGTTCTTAGCCTATTCAT 1034 Query 954 AAGGAAGTATTGCTCGGATGGCTATTTTGATAAAGGTTGGGAATTGCTTATGGGAATGAA 1013 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1035 AAGGAAGTATTGCTCTGATGGCTACTTTGATAAAGGTTGGGAATTGCTTATGGGAATGAA 1094 Query 1014 ACACTACGGCATCAGACCTGATATTGTGGCATTTACAGTTTTTATTGATAAATTGTGTAA 1073 | |||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1095 AGACTATGGCATCAGACCTGACATTGTGGCATTTACAGTTTTCATTGATAAATTGTGTAA 1154 Query 1074 GGCAGGGTTTCTAAAAGAAGCGACTTCGGTATTGTTTAAACTCAAACTCTTTGGTATCTC 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1155 GGCAGGGTTTCTAAAAGAAGCGACTTCGGTATTGTTTAAACTCAAACTCTTTGGTATCTC 1214 Query 1134 TCAGGATTCTGTATCCGTCAGTTCTGTTATCGACGGGTTCTGTAAGGTGGGGAAACCAGA 1193 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1215 TCAGGATTCTGTATCCGTCAGCTCTGTTATCGACGGGTTCTGTAAGGTAGGGAAACCAGA 1274 Query 1194 GGAAGCCATTAAGCTCATTCATTCTTTTCGTCTTAGACCAAACATTTTTGTGTACAGTAG 1253 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1275 GGAAGCCATTAAGCTCATTCATTCTTTTCGCCTTAGACCAAACATTTTTGTGTACAGTAG 1334 Query 1254 CTTTCTGTCAAATATATGTTCCACAGGAGACATGCTCAGAGCTTCTACCATATTTCAGGA 1313 ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1335 CTTTCTGTCAAATATATGTAGCACAGGAGACATGCTCAGAGCCTCTACCATATTTCAGGA 1394 Query 1314 GATTTTCGAGTTGGGACTCCTTCCTGATTGTGT-TTGTTATACTACTATGATTGATGGGT 1372 |||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1395 GATTTTTGAGTTGGGACTCCTTCCTGATTGT-TATTGTTATACTACTATGATTGATGGGT 1453 Query 1373 ATTGTAATCTAGGCAGAACTGATAAAGCTTTTCAATACTTCGGGGCGCTGTTGAAAAGCG 1432 |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 1454 ATTGTACTCTAGGCAGAACAGATAAAGCTTTTCAATTTTTCGGGGCGCTGTTGAAAAGCG 1513 Query 1433 GGAACCCGCCATCCTTGACAACATCTACAATACTTATTGGAGCTTGCAGCAGGTTTGGAA 1492 |||||||||||||||| | ||||| |||| |||||||||| |||||||||| |||||||| Sbjct 1514 GGAACCCGCCATCCTTAATAACATATACACTACTTATTGGTGCTTGCAGCAAGTTTGGAA 1573 Query 1493 GCATAAGTGATGCAGAATCTGTGTTTCGGAATATGAAAACTGAAGGTCT-CAAACTGGAT 1551 |||||||||||||||||||||||||||||| |||||||||||||||| | || | |||| Sbjct 1574 GCATAAGTGATGCAGAATCTGTGTTTCGGATTATGAAAACTGAAGGTTTGCATCC-GGAT 1632 Query 1552 GTCGTAACATATAACAATCTGATGCATGGGTATGGGAAGACACATCAGCTGAATAAAGTT 1611 || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1633 GTTGTAACGTATAACAATCTGATGTATGGGTATGGGAAGACACATCAGCTGAATAAAGTA 1692 Query 1612 TTTGAGCTTATTGATGAGATGAGATCTGCTGGTATCTCTCCAGATGTTGCAACCTACAAT 1671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1693 TTTGAGCTTATTGATGAGATGAGATCTGCTGGTATCTCTCCAGATGTTGCAACCTACAAT 1752 Query 1672 ATTTTGATACATAGCATGGTTGTTAGAGGATATATCGATGAAGCAAATGAAATTATCAGT 1731 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 1753 ATTTTGATACATAGCATGGTGGTTAGAGGATATGTCGATGAAGCAAATGAAATTATCAGT 1812 Query 1732 GAGCTTATCCGACGAGGCTTTGTTCCTAGTACATTAGCATTCACAGATGTGATTGGTGGG 1791 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1813 GAGCTTATCCGACGAGGCTTTGTTCCTAGTGCATTAGCATTCACAGATGTGATTGGTGGG 1872 Query 1792 TTCTCGAAGAGAGGGGATTTTCAGGAAGCGTTTATTTTGTGGTTCTACATGGCTGATCTT 1851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1873 TTCTCGAAGAGAGGGGATTTTCAGGAAGCGTTTATTTTGTGGTTCTACATGGCTGATCTT 1932 Query 1852 AGAATGAAACCTGATGTTGTAACATGCAGTGCATTACTTCATGGCTATTGCAAAGCGCAG 1911 ||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 1933 AGAGTGAAACCTGATGTTGTAACATGCAGTGCATTACTTCATGGTTATTGCAGAGCGCAG 1992 Query 1912 AGAATGGAGAAAGCTATTGTTTTGTTTAATAAGTTGCTTGATGCGGGGTTAAAGCCAGAT 1971 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1993 AGAATGGAGAAAGCTATTGTTTTGTTTAATAAGTTGCTTGATGCGGGGTTAAAGCCAGAT 2052 Query 1972 GTTGTTTTGTATAATACGCTCATCCATGGATATTGCAGTGTAGGAGATATTGAGAAAGCA 2031 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2053 GTGGTTTTGTATAATACGCTCATCCATGGATATTGCAGTGTAGGAGATATTGAGAAAGCA 2112 Query 2032 TGTGAGTTGATTGGTTTGATGGTTCAAAGGGGAATGCTTCCAAATGAGAGTACCCATCAC 2091 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2113 TGTGAGTTGATTGGTTTGATGGTTCGAAGGGGAATGCTTCCAAATGAGAGTACCCATCAC 2172 Query 2092 GCACTTGTTTTGGGGCTTGAGGGAAAGAGGTTTGTGAACTCAGAA-ACGCATGCATCCAT 2150 ||||||||| ||||||||||||||||| |||| ||||||| ||| | |||||||||||| Sbjct 2173 GCACTTGTTGTGGGGCTTGAGGGAAAGCGGTTCATGAACTCGGAAGA-GCATGCATCCAT 2231 Query 2151 GCTACTTGAAGAAATTATTGTTGCAAAATGGCACCTGA 2188 |||||||||||||||| | |||||||| |||| ||||| Sbjct 2232 GCTACTTGAAGAAATTGTAGTTGCAAA-TGGCGCCTGA 2268 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 130423302671 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5