BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19310.1
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480538 jgi|Araly1|480538|fgenesh2_kg.3__3239__AT2G19310.1 845 0.0
> Ahg480538 jgi|Araly1|480538|fgenesh2_kg.3__3239__AT2G19310.1
Length=580
Score = 845 bits (457), Expect = 0.0
Identities = 542/583 (93%), Gaps = 6/583 (1%)
Strand=Plus/Plus
Query 9 AGAATAGAGAAGAAGAAGATGTCGATGATTCCGATCAGCAATCGCCGGAGACTATCTCCC 68
||| ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1 AGAGTAGAGAAGAAGAAGATGTCAATAATTCCGATCAGCAATCGCCGGAGACTCTCTCCC 60
Query 69 GGCGATAGAATCTGGGAACCATTTGAACTCATGAACACCTTTCTTGATTTCCCATCACCA 128
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCGACAGAATCTGGGAACCATTTGAACTCATGAACACCTTTCTTGATTTCCCATCACCA 120
Query 129 GCTCTCTTTCTTTCTCACCACTTTCCCTCACTTTCTCGAGAAATATTCCCA-CAAACTTC 187
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 121 TCTCTCTTTCTTTCTCACCACTTTCCCTCACTTTCTCGAGAAATATTCCCATCAT-CTTC 179
Query 188 ATCATCCACCGTCAATACGCAGCTCAATTGGACCGAGACTCCGACGGCTCACGTTTTCAA 247
|||| | |||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 180 ATCAACAACCGTCAAGACGCAGCTTAATTGGACTGAGACTCCGACGGCTCACGTTTTCAA 239
Query 248 AGCGTATCTTCCGGGAGTGGATCAAGACGAAGTGATTGCGTTCGTAGATGAAGAAGGATA 307
|||||||||||||||||||| ||||||||||| ||| | ||||||||| || ||||||||
Sbjct 240 AGCGTATCTTCCGGGAGTGGCTCAAGACGAAGCGATAGTGTTCGTAGACGACGAAGGATA 299
Query 308 TCTTCAGATCTGTACTGGCGACAACAAGTTCATGAGCAGATTT-AAGCTTCCTAACAACG 366
||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 300 TCTCCAGATCTGTACTGGCGACAACAAGTTCATGAGCAGATTTGAA-CTTCCTAACAACG 358
Query 367 CCTTGACGGATCAGGTCACGGCGTGGATGGAGGACGAGTTTCTTGTCGTGTTCGTTGAGA 426
|||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 359 CCTTGAAGGATCAGGTCACGGCGTGGATGGAGGATGGGTTTCTTGTCGTGTTCGTTGCGA 418
Query 427 AAGATGCTTCTTCGTCGCCGCCACAGCTGCCGGAGATTGAGGAGAATCGTAACGTGAGAG 486
|||||| |||||| |||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 419 AAGATGGTTCTTCTTCGCCGCCACCGCTACCGGAGATAGAGGAGAATCGTAACGTGAGAG 478
Query 487 TTGTGGAAATCACCGGCGATGATGATTAATTAAGTGTTACATGTTGTCGAGATATATGTG 546
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||
Sbjct 479 TTGTGGAAATCACCGGCGATGATGATTAATCAAGTGTTAAATGTTGTCGAGATATGTATG 538
Query 547 AATTAAAGGGAAACTTAAAAGTTT-AGTGTACTAAATGAACAA 588
|||||||| |||||||| |||||| | ||||||||||||||||
Sbjct 539 AATTAAAGTGAAACTTACAAGTTTTA-TGTACTAAATGAACAA 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22416275196
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5