BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19320.1
Length=418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931466 jgi|Araly1|931466|scaffold_303923.1 316 6e-86
> Ahg931466 jgi|Araly1|931466|scaffold_303923.1
Length=278
Score = 316 bits (171), Expect = 6e-86
Identities = 227/254 (89%), Gaps = 3/254 (1%)
Strand=Plus/Plus
Query 5 gagagatatggaggcaacgaaagagagaatggagaaagaccagaaaaagagagTCGTCAC 64
|||||| ||||||||||||||||| |||||||| ||||| |||| |||| || | ||||
Sbjct 15 GAGAGAAATGGAGGCAACGAAAGAAAGAATGGAAAAAGAAGAGAAGAAGATAGACCTCAC 74
Query 65 CAACGAGGCGGGAAAAGCCGAAGACAACACGA---TAAGAACCATCATTCGTGAATCTAT 121
||| ||||| |||||||||||||||||||||| | ||| |||| ||||||| |||||
Sbjct 75 CAATGAGGCCGGAAAAGCCGAAGACAACACGACGGTGAGAGCCATTGTTCGTGAGTCTAT 134
Query 122 AGTGGAAGACAGAGGTTCCAACGACGATGATGGCAACAAAGACAACGACCATGGCGCTAG 181
|||||||||||||||||||||||||| ||| ||| |||||||||||||||||| |||| |
Sbjct 135 AGTGGAAGACAGAGGTTCCAACGACGGTGACGGCGACAAAGACAACGACCATGACGCTCG 194
Query 182 CAAGCCAGAGGACATTCTTGCTTTCTCAAGAACCGTACGAAAGATCGATTCGTCCCTCGA 241
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 195 CAAGCCAGAGGACATTCTTGCTTTCTCAAGAACCGTACGGAAGATCGATTCATCCCTCGA 254
Query 242 GTAGTAGTTAATGT 255
|||||| |||||||
Sbjct 255 GTAGTATTTAATGT 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15033302066
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5