BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19330.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343262 jgi|Araly1|343262|fgenesh1_pg.C_scaffold_3003025 1742 0.0
Ahg353815 jgi|Araly1|353815|fgenesh1_pg.C_scaffold_7000988 929 0.0
> Ahg343262 jgi|Araly1|343262|fgenesh1_pg.C_scaffold_3003025
Length=1134
Score = 1742 bits (943), Expect = 0.0
Identities = 1088/1153 (94%), Gaps = 29/1153 (3%)
Strand=Plus/Plus
Query 1 ATGATATGCGAGGAGGCATATCATCAGCAACCGCAAATACAAAAGGAACAAATGATGAC- 59
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATATGCGAAGAGGCATATCATCAGCAACCGCAAATACAAAAGGAACAAATGATGACT 60
Query 60 --------GATGGATCAACGTAATAATCATCAACGGAAGAGatcaccattatcctcacca 111
|||||||||||||| ||||||||||||| | | | | | | ||| |
Sbjct 61 ATGATGATGATGGATCAACGTAGTAATCATCAACGG-A-A-A--A--A--A---TCA-C- 106
Query 112 tcatctccatcatcaccatcgtctccatcatcaccaaagtcaccatcattcaATAATAAT 171
||| | ||| || ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 107 -CAT-T--ATCGTCGCCATCATCTCCATCATCACCAAAATCACCATCATTCAATAATAAT 162
Query 172 GAGGAAGAGAGGCTAGAGGTTGTGAATTTGAGTGGGATGGCATTGGAGTCTCTCCCTAAT 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GAGGAAGAGAGGCTAGAGGTTGTGAATTTGAGTGGGATGGCATTGGAGTCTCTCCCTAAT 222
Query 232 CCTTCACTCAATTTAGCTCAGATTTGCAAGCTTGATCTCTCCAATAATCATCTTCAGACC 291
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 223 CCTTCACTCAATTTAGCTCAGATTTGCAAGCTTGATCTCTCCAACAATCATCTCCAGACT 282
Query 292 ATACCAGAATCACTAACAGCGAGACTACTCAACTTGATAGCATTAGATGTTCACTCAAAT 351
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 ATACCAGAATCATTAACAGCGAGACTACTCAACTTGATAGCATTAGATGTTCACTCAAAT 342
Query 352 CAGATCAAAGCTCTTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGACTCTCAATGTC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CAGATCAAAGCTCTTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGACTCTCAATGTC 402
Query 412 TCCGGCAACTTTCTTGTATCCTTTCCCAAATCTATCCAACATTGCAGGTCAT-TGGAAGA 470
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 403 TCCGGCAACTTTCTTGTATCCTTCCCCAAATCTATCCAACATTGCAGGTC-TCTGGAAGA 461
Query 471 ACTAAATGCAAACTTCAACAAACTAATCAGATTACCAGACTCCATTGGTTTTGAACTCAC 530
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 462 ACTAAATGCAAACTTCAACAAACTCATCAGATTACCAGACTCCATTGGATTTGAACTCAC 521
Query 531 CAATCTAAGGAAGCTCTCTATCAACTCCAACAAGCTAATTAGTCTTCCAATCTCCATTAC 590
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 522 CAATCTAAGGAAGCTCTCTATCAACTCCAACAAGCTAATTAGTCTTCCACTCTCCATTAC 581
Query 591 TCACCTCACATCTCTCCGTGTCCTTGACGCCCGTCTCAACTGCCTCATGATTCTACCGGA 650
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||
Sbjct 582 TCACCTCACATCTCTCCGTGTCCTCGACGCTCGTCTCAACTGCCTCATGATTCTCCCAGA 641
Query 651 TGATCTCGAGAATCTCATCAACCTCGAGATCCTCAATGTCAGCCAGAATTTCCAGTATCT 710
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 642 TGATCTCGAGAATCTCATCAACCTCGAGATTCTCAATGTCAGCCAGAATTTCCAGTATCT 701
Query 711 TTCCGCTCTTCCATCTTCCATTGGCCTTTTAATGAACCTCATTGAGCTCGATGTTAGCTA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TTCCGCTCTTCCATCTTCCATTGGCCTTTTAATGAACCTCATTGAGCTCGATGTTAGCTA 761
Query 771 CAACAAGATCACTGTCTTGCCAGAGTCCATTGGCTGCATGAGACGGTTAAGGAAGCTGAG 830
||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||
Sbjct 762 CAACAAGATCACTGTATTACCTGAGTCCATTGGCTGCATGAGAAGGTTAAGGAAGCTGAG 821
Query 831 TGTTGAAGGAAACCCGCTTGTGTCGCCACCCATAGAGGTGATGGAGCAGAATTTGCAGGT 890
|||||||||||||||||| ||||| || ||||| |||||||||||||||||| |||||||
Sbjct 822 TGTTGAAGGAAACCCGCTCGTGTCCCCGCCCATCGAGGTGATGGAGCAGAATCTGCAGGT 881
Query 891 GGTGAGAGAGTATCTGACACAGAAGATGAATGGTGGCTCACCAAGGAGTCCCAGCAAAAA 950
||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 882 GGTGAGAGAGTATCTGACACAAAAGATGAATGGAGGCTCACCAAGGAGTCCAAGCAAAAA 941
Query 951 GAAGTCATGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCAATGGCGGATCAAGAAG 1010
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GAAGTCTTGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCAATGGCGGATCAAGAAG 1001
Query 1011 CTGGAATAGAGAGGAGAGAGAAGGGTTCATCATGCCTGAGTACCGCTCCATCGACAGTCT 1070
|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct 1002 CTGGAATAGAGAGGAGAGGGAAGGGTTTATCATGCCTGAGTACCGCGCCATCGACAGTCT 1061
Query 1071 TGCTTCGCCTAGGTATTCTGGAATGTTCTCTCCACGTCGTCTCTTTTCTCCAAGAACCTA 1130
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1062 TGCTTCGCCTAGGTATTCTGGAATGTTCTCTCCACGCCGTCTCTTTTCTCCAAGAACCTA 1121
Query 1131 TTTCAGCAGATAA 1143
|||||||||||||
Sbjct 1122 TTTCAGCAGATAA 1134
> Ahg353815 jgi|Araly1|353815|fgenesh1_pg.C_scaffold_7000988
Length=1110
Score = 929 bits (503), Expect = 0.0
Identities = 866/1040 (83%), Gaps = 30/1040 (3%)
Strand=Plus/Plus
Query 119 catcatcaccatcgtc-tccatcatcaccaaagtcaccatcattcaATAATAATGAGGAA 177
||||| |||| || || |||| |||||| |||||||||| |||||| || ||||||
Sbjct 86 CATCACCACCCTCATCACCCAT-TTCACCATCTTCACCATCATACAATAACAACGAGGAA 144
Query 178 GAGAGGCTAGAGGTTGTGAATTTGAGTGGGATGGCATTGGAGTCTCTCCCTAATCCTTCA 237
|| || || |||||||||||||||||||| ||||||||| | |||||||| ||||||||
Sbjct 145 GATAGACTTGAGGTTGTGAATTTGAGTGGCATGGCATTGCAATCTCTCCCAAATCCTTCC 204
Query 238 CTCAATTTAGCTCAGATTTGCAAGCTTGATCTCTCCAATAATCATCTTC-AGACCATACC 296
|||||||| || | ||||||||||||||||||||||| |||||| || ||| |||||
Sbjct 205 CTCAATTTGGCAAATATTTGCAAGCTTGATCTCTCCAACAATCAT-ATCAAGAAAATACC 263
Query 297 AGAATCACTAACAGCGAGACTACTCAACTTGATAGCATTAGATGTTCACTCAAATCAGAT 356
|||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |||||
Sbjct 264 AGAATCTCTAACAGCGAGATTACTCAACTTGATAGCATTAGATATTCACTCTAACCAGAT 323
Query 357 CAAAGCTCTTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGACTC-TCAATGTCTCCG 415
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 324 CAAAGCTCTTCCAAACTCCATTGGTTGTCTCTCTAAGCTCAAGA-TCCTTAATGTCTCCG 382
Query 416 GCAACTTTCTTGTATCCTTTCCC-AAATCTATCCAACATTGCAGGTCATTGGAAGAACTA 474
|||||||||| || ||| | ||| ||| |||| ||| ||||||||||| | |||||||||
Sbjct 383 GCAACTTTCTCGTTTCCCTCCCCCAAA-CTATTCAAAATTGCAGGTCACTCGAAGAACTA 441
Query 475 AATGCAAACTTCAACAAACTAATCAGATTACCAGACTCCATTGGTTTTGAACTCACCAAT 534
|| || ||||||||| | || || |||||||||||| ||| || || ||||| ||||||
Sbjct 442 AACGCCAACTTCAACGAGCTGATTAGATTACCAGACAACATAGGCTTAGAACTAACCAAT 501
Query 535 CTAAGGAAGCTCTCTATCAACTCCAACAAGCTAATTAGTCTTCCAATCTCCATTAC-TCA 593
|| |||||||||| | ||||||| |||||||| ||||| || |||| | |||| || | |
Sbjct 502 CTGAGGAAGCTCTGTGTCAACTCAAACAAGCTCATTAGCCTACCAACCACCATCACCT-A 560
Query 594 CCTCACATCTCTCCGTGTCCTTGACGCCCGTCTCAACTGCCTCATGATTCTACCGGATGA 653
|||||| || || |||||||| || || |||||||| ||||| ||||| || ||||| ||
Sbjct 561 CCTCACTTCCCTACGTGTCCTCGATGCTCGTCTCAATTGCCTTATGATCCTCCCGGAGGA 620
Query 654 TCTCGAGAATCTCATCAACCTCGAGATCCTCAATGTCAGCCAGAATTTCCAGTATCTTTC 713
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 621 CCTCGAGAACCTCATCAACCTCGAGATCCTCAATGTCAGTCAGAACTTCCAGTATCTTTC 680
Query 714 CGCTCTTCCATCTTCCATTGGCCTTTTAATGAACCTCATTGAGCTCGATGTTAGCTACAA 773
|||||||||||||| || || ||| | |||||||| | ||||| ||| ||||||||||
Sbjct 681 TGCTCTTCCATCTTCTATCGGTCTTCTCCTGAACCTCCTCGAGCTGGATATTAGCTACAA 740
Query 774 CAAGATCACTGTCTTGCCAGAGTCCATTGGCTGCATGAGACGGTTAAGGAAGCTGAGTGT 833
|||||| || || ||||| ||||||||||| |||||||| ||| | ||||| ||||| |
Sbjct 741 CAAGATAACAGTGTTGCCTGAGTCCATTGGATGCATGAGGCGGCTGAGGAAACTGAGCGC 800
Query 834 TGAAGGAAACCCGCTTGTGTCGCCACCCATAGAGGT-GATGGAGCAGAATTTGCAGGTGG 892
|| |||||||| || ||||| |||||||| ||||| | ||||||||| ||||||| |
Sbjct 801 AGAGGGAAACCCACTCGTGTCCCCACCCATTGAGGTTG-TGGAGCAGAGCTTGCAGGCAG 859
Query 893 TGAGAGAGTATCTGA-CACAGAAGATGAATGGTGG-CTCACCAAGGAGTCCCAGCAAA-A 949
||||||||||||| | | || |||||||||||| || || || | | ||||| |
Sbjct 860 TGAGAGAGTATCTAAGC-CAAAAGATGAATGGTAAACTGGTGAAC-AG-CGCGGCAAAGA 916
Query 950 AGAAGTCATGGGGATTCGGTAAATTGGTGAAGTATGGGACGTTCAATGGCGGATCAAGAA 1009
||||| ||||||| ||| ||||| |||| ||||||||||| ||||||||| ||||||||
Sbjct 917 AGAAGACATGGGGTTTCCGTAAACTGGTCAAGTATGGGACATTCAATGGCAGATCAAGA- 975
Query 1010 GCT-GGAATAGAGAGGAGAGAGAAGGGT-TCATCATGCCTGAGTACCGCTCC-ATCGACA 1066
||| ||| ||||| ||||||||||| | |||||||||| |||||||| ||| || || |
Sbjct 976 GCTTGGACCAGAGAAGAGAGAGAAGG-TCTCATCATGCCCGAGTACCG-TCCCATTGATA 1033
Query 1067 GTCTTG-CTTCG-CCTAGGTATTC-TGGAATGTTCTCTCCACGTCGTCTCTTTTCTCCAA 1123
|| | ||||| || || | ||| || ||||| ||| || || |||||||| || ||||
Sbjct 1034 -TCCTAACTTCGACCAAG-T-TTCCTGTAATGTGCTCACCTCGGCGTCTCTTCTCCCCAA 1090
Query 1124 GAACCTATTTCAGCAGATAA 1143
||||||||||||||||||||
Sbjct 1091 GAACCTATTTCAGCAGATAA 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5