BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19350.1
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480536 jgi|Araly1|480536|fgenesh2_kg.3__3237__AT2G19350.1 902 0.0
> Ahg480536 jgi|Araly1|480536|fgenesh2_kg.3__3237__AT2G19350.1
Length=630
Score = 902 bits (488), Expect = 0.0
Identities = 554/586 (95%), Gaps = 3/586 (1%)
Strand=Plus/Plus
Query 73 GACGTCGTTGTGATTCAAATCTTTTTCCGGTGAACTTAATTTCGGAGGCTATTCGATGGC 132
|||||||||||||||| |||| ||||||||| || || ||||||||||||||||||||||
Sbjct 45 GACGTCGTTGTGATTCTAATCGTTTTCCGGTAAAATTGATTTCGGAGGCTATTCGATGGC 104
Query 133 ATACGTCGACCATGCGTTCTCGATATCGGACGAAGACCTAATGATTGGGACTTCGTACAC 192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 TTACGTCGACCATGCGTTCTCGATATCGGACGAAGACCTAATGATTGGGACTTCGTACAC 164
Query 193 CGTCAGTAATCGACCACCGGTGAAGGAGATCTCACTCGCGGTGGGTCTACTCGTATTCGG 252
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 165 CGTCAGTAATCGACCACCGGTGAAGGAGATCTCACTCGCGGTGGCTCTACTCGTATTCGG 224
Query 253 AACCCTAGGAATTGTTTTAGGTTTCTTCATGGCGTATAACCGTGTTGGTGGTGATCGAGG 312
|||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 225 AACCCTAGGAATCGTTTCAGGTTTCTTCATGGCGTATAACCGAGTTGGTGGTGATCGAGG 284
Query 313 TCACGGGATTTTCTTCATTGTACTGGGATGTCTACTGTTTATCCCGGGGTTTTACTATAC 372
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 285 TCACGGGATTTTCTTCATTGTACTCGGATGTCTTCTGTTTATCCCGGGGTTTTACTATAC 344
Query 373 ACGGATTGCATATTACGCTTACAAAGGATACAAAGGTTTCTCTTTCTCAAATATACCATC 432
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 345 ACGGATTGCATATTACGCTTACAAAGGATACAAAGGTTTCTCCTTCTCAAATATACCATC 404
Query 433 CGTTTAAGCCTTATGACTTGGTGTCTCTTCTCTCTT---ACTCAATGTATAGGTTGTTTA 489
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 405 CGTTTAAGCCTTATGACTCGGTGTCTCTTCTCTCTTCTTACTCAATGTATAGGTTGTTTT 464
Query 490 CGTTTTTATTACTTGACTTATGCTCTTTAGTGTGATTTTACATGACTTGAATGAGCCATG 549
|| || |||| |||||||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct 465 CGCTTATATTGCTTGACTTATTCTCTTTAGTGTGAGTTTACATGACTTGAATGACCCATG 524
Query 550 TTTGATACATATGTATCTCTTTTGGTTTCTCCTTCTCTATGTTAGATCATTAGTCTTCGA 609
||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 525 TTTGATATATGTGTATCTCTTTTGGTTTCTCTTTCTCTATGTTAGATCATTAATCTTCGA 584
Query 610 TAACCATCCTTGTATAATGTAGACCAAGCTAATCACATGTGATGTA 655
|||||||||||||| ||| |||| ||||||||||||| ||||||||
Sbjct 585 TAACCATCCTTGTAAAATATAGAACAAGCTAATCACACGTGATGTA 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25161125220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5