BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19360.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906449 jgi|Araly1|906449|Al_scaffold_0003_3577 952 0.0
Ahg314177 jgi|Araly1|314177|fgenesh1_pm.C_scaffold_1002957 364 7e-100
> Ahg906449 jgi|Araly1|906449|Al_scaffold_0003_3577
Length=1239
Score = 952 bits (515), Expect = 0.0
Identities = 592/629 (94%), Gaps = 6/629 (1%)
Strand=Plus/Plus
Query 1 ATGATCGGTCGAATAATGGCCAATTTAATTGTGCTATACATTCTAGTCATAGAAGCTATG 60
||||||| |||||||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 1 ATGATCGATCGAATAATGACCAATTTAATCGTGCTATACATTCTAGTCATACTAGCTATG 60
Query 61 ATAGTCATAGGAAGCGAGTCTTCTGATTCTCGTGATGCTGAAATAAATCGACTCTTGAAG 120
||||||| ||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 61 ATAGTCACCGGAAGCGAGTCTTCTAATACTCGTGATGCTGAAATAAATCGACTCATGAAG 120
Query 121 AAACTCAACAAACCTTTCCTTAAATCCATCAAGAGTCCAGATGGAGATATCATAGATTGT 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACTCAACAAACCTTTTCTTAAATCCATCAAGAGTCCAGATGGAGATATCATAGATTGT 180
Query 181 GTTCATATGAAAAATCATCCCATTTATGATCATCCTTTATTCAAAAACCACACCATTCAG 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTCATATGAAAAATCATCCAATTTATGATCATCCTTTATTCAAAAACCACACCATTCAG 240
Query 241 ATGAGACCAACTTCTTACCCAGAAGGATGGAGCAATAAAGATTCAGATAACGAAAAACAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 ATGAGACCAACTTCTTACCCAGAAGGATGGAGCAATAAAGATTCAGATAATGAAAAACAC 300
Query 301 AAAATGGTTCCTCAACTTTGGACAATCAATGGAAAATGTCCAAAAAATAGTATTCCCATC 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AATATGGTTCCTCAACTTTGGACAATCAATGGAAAATGTCCAAAAAATAGTATTCCGATC 360
Query 361 AGAAGAACGAGAAAAGAAGATATTTTACGAGCAAAATCAATTGAAAGGTTTGGGAAAAAA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 361 AGAAGAACGAGAAAAGAAGATATTTTACGAGCAAAATCCATTGAAAGGTTTGGAAAAAAA 420
Query 421 GATCCCAACAATATCCATCAACATAAAC--C-AACGAATCCAACTAATAACGACGGTACA 477
|||||||||||||||||||||||||||| | ||| ||||||||||| ||||||| |
Sbjct 421 GATCCCAACAATATCCATCAACATAAACGACCAACCAATCCAACTAA---CGACGGTGTA 477
Query 478 CATGAGTATGCCATACTTAAAGTGGGAGAAAATTCTCCTCGAGCTAAATTTTATGGAACC 537
||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 478 CATGAGTATGCCATACTTAAAGTGGAAGTAAATTCTCCTCGAGCTATGTTTTATGGAACC 537
Query 538 CAAACGCTTATAAATGTGTGGAAGCCTTTTGTACAACATAGAAATGAATTTAGCTTATCA 597
||||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||| ||
Sbjct 538 CAAACTTTTATAAATGTGTGGAAGCCTTATGTACAACATACAAAAGAATTTAGCTTAGCA 597
Query 598 CAAATATGGATGTCGGCTGGAAGTTATAG 626
|||||||||||||||||||||||||||||
Sbjct 598 CAAATATGGATGTCGGCTGGAAGTTATAG 626
Score = 874 bits (473), Expect = 0.0
Identities = 569/615 (93%), Gaps = 8/615 (1%)
Strand=Plus/Plus
Query 665 ATAGTACTCAACTTGAAACCATTGAAGCTGGTTGGCAGGTG-TGCACTGTACTTTATAAT 723
||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 623 ATAGTACTCAACTTGAAACCATTGAAGCTGGTTGGCAGGTGTTG-ACTGCACTTTATAAT 681
Query 724 GATACTAACCCTCGATACTTTGTCTACTGGACTAATGATTCATATACACAACATGGTTGC 783
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 682 GATACTAACCCTCGATACTTTGTCTATTGGACTAATGATTCATATATACAACATGGTTGC 741
Query 784 TATAACAATCTTTGCTCCGGCTTTGTTGTTGTCAACCAAGCATTTGCTCTAGGCGCGGCC 843
||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TATAATACTATTTGCCCCGGCTTTGTTGTTGTCAACCAAGCATTTGCTCTAGGCGCGGCC 801
Query 844 GTTCCTGAAGTTTCTATCCGTGATGGTCTACAATACGAAATTTTCACAAGTATATGGAAG 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GTTCCTGAAGTTTCTATCCGTGATGGTCTACAATACGAAATTTTCACAAGTATATGGAAG 861
Query 904 GATCGTAGTTCAGGAAATTGGTGGTTGAAATTTGGTACTCATTTAATTGTTGGATATTGG 963
|| ||||||||||| ||||||||||||| ||||||||||||| ||||||| || ||||||
Sbjct 862 GACCGTAGTTCAGGGAATTGGTGGTTGAGATTTGGTACTCATGTAATTGTCGGGTATTGG 921
Query 964 CCTTCTTCATTGTTCAATCGCTTAGGAGAT-GCTGCGAGCC-AAGTTCATTGGGGAGGCG 1021
||||||| |||||||||||| ||| || || | ||||| || ||||| | ||||||||||
Sbjct 922 CCTTCTTTATTGTTCAATCGTTTACGA-ATTGGTGCGA-CCGAAGTTGAATGGGGAGGCG 979
Query 1022 AAATAGTAAACGTAAAGGAGAACAACCAACACACGTCAACACAAATGGGAAGTGGGTCGT 1081
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 980 AAATAGTAAATTTAAAGGAGAACAACCAACACACGTCAACACACATGGGAAGTGGGTCAT 1039
Query 1082 TTGCAATAAATGGATTTAGAAAGGCTAGTTATTTTAGGAATATTTTAGTA-CTTGATGAA 1140
||||||||||||||| |||||| ||||||||||||||||||||||| ||| || ||||||
Sbjct 1040 TTGCAATAAATGGATATAGAAAAGCTAGTTATTTTAGGAATATTTTCGTAACT-GATGAA 1098
Query 1141 AACAATACTACGAAGCAACCTGTAGGTGCTTCTACATCTGAGACGGAAGGAAGTTGTTAT 1200
|| |||| ||||||| ||||||||||| ||||||||| || | |||||| ||||||||||
Sbjct 1099 AATAATATTACGAAGAAACCTGTAGGTTCTTCTACATTTGTGTCGGAAGAAAGTTGTTAT 1158
Query 1201 GACATCAGGTATCGCACTGATCAAGCATGGGGAAGTTTCTTTTACTATGGTGGTCCTGGT 1260
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1159 GACATAAGGTATCGCACTGAACAAGCCTGGGGAAGTTTCTTTTACTATGGTGGTCCTGGT 1218
Query 1261 CGAAGTCCTTTTTGT 1275
||||||||||| |||
Sbjct 1219 CGAAGTCCTTTCTGT 1233
> Ahg314177 jgi|Araly1|314177|fgenesh1_pm.C_scaffold_1002957
Length=1206
Score = 364 bits (197), Expect = 7e-100
Identities = 390/481 (81%), Gaps = 21/481 (4%)
Strand=Plus/Plus
Query 29 TTGTGCT-ATACATTCTAGTCATAGAAGCTATGATAGTCATAGGAAGCGAGTCTTCTGAT 87
||||||| || ||||||| ||||| ||| || ||||| | |||||||| |||||||
Sbjct 17 TTGTGCTCAT-CATTCTAACCATAGCAGC---GAAAGTCACCGAAAGCGAGTTTTCTGAT 72
Query 88 TCTCGTGATGCTGAAATAAATCGACTCTTGAAGAAACTCAACAAACCTTTC-CTTAAATC 146
|| |||||| |||||| | |||| |||||||||||||| ||||| | | ||||||||
Sbjct 73 AGTCACGATGCTAAAATAACTAGACTTTTGAAGAAACTCAATAAACC-TGCTCTTAAATC 131
Query 147 CATCAAGAGTCCAGATGGAGATATCATAGATTGTGTTCATATGAAAAATCATCCCATTTA 206
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 132 TATTAAGAGTCCAGATGGAGATATTATAGATTGTGTTCATATGAAGAATCATCCCATTTA 191
Query 207 TGATCATCCTTTATTCAAAAACCACACCATTCAGATGAGACCAACTTCTTACCCAGAAGG 266
||||||||||||||| ||||| ||||| || ||||||||||||| |||||| || |||||
Sbjct 192 TGATCATCCTTTATTTAAAAATCACACAATCCAGATGAGACCAAGTTCTTATCCGGAAGG 251
Query 267 A-TGGAGCAATAAAGATTCAGAT-AACGAAAAACATAAAATG--GTTCCTCAACTTTGGA 322
| || | ||| || |||||| || ||||| ||||| || ||||||| ||||
Sbjct 252 AATGAAT-AATGAACCTTCAGACCAA--AAAAAGG-AAAATTTAGTGACTCAACTATGGA 307
Query 323 CAATCAATGGAAAATGTCCAAAAAATAGTATTCCCATCAGAAGAACGAGAAAAGAAGATA 382
||| ||| |||||||| || |||||||||||||| || |||||||| | || ||||||||
Sbjct 308 CAACCAACGGAAAATGCCCCAAAAATAGTATTCCGATAAGAAGAACAACAAGAGAAGATA 367
Query 383 TTTTACGAGCAAAATCAATTGAAAGGTTTGGGAAAAAAGA-TCCCAACAA-TATCCATCA 440
|||||||||||||||| || ||||| ||||| |||||| | | |||||| | | | |||
Sbjct 368 TTTTACGAGCAAAATCGATCGAAAGCTTTGGAAAAAAA-ACTTCCAACAGGTTTAC-TCA 425
Query 441 ACATAAACCAACGAA-TCCAACTAATAACGACGGTACACATGAGTATGCCATACTTAAAG 499
|| || ||| ||| || | ||| ||||||||| | ||||||||| || |||||| |||
Sbjct 426 ACCTAGTCCAGTGAACTCGA-CTAGTAACGACGGCATACATGAGTACGCAATACTTGAAG 484
Query 500 T 500
|
Sbjct 485 T 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5