BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19380.1
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480534 jgi|Araly1|480534|fgenesh2_kg.3__3235__AT2G19380.1 2361 0.0
> Ahg480534 jgi|Araly1|480534|fgenesh2_kg.3__3235__AT2G19380.1
Length=1794
Score = 2361 bits (1278), Expect = 0.0
Identities = 1675/1855 (90%), Gaps = 74/1855 (4%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTTTCAGTGCGATGATTGTGGCGAGAATCTGAAGAAGCCAAGGCTAC-CGAG 59
|||||||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||
Sbjct 1 ATGGTGTGGTTTCAGTGCGAAGATTGTGGCGAGAGTCTGAAGAAGCCAAGGCT-CTCGAG 59
Query 60 ACACATGAGTATGTGCACTGCCACCAAGTTTTCTTGCATTGACTGTGGAAACATGTTTGG 119
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GCACTTGCGTATGTGCACTGCCACCAAGTTTTCTTGCATTGACTGTGGAAACATGTTTGG 119
Query 120 GCAAGTTAGTGTTCACTATCATAATCAATGCATCACCGAAGCTGAGAAATATGGTCCAAT 179
||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 120 GCAAGATAGTGTTTACTATCATAATCAATGCATCACCGAGGCTGAGAAGTATGGTCCAAA 179
Query 180 GGTGCGATCTAATGGCGAAAGTTCGAAACAAAAGCACGATTTCGATATAAATGCCGAGTT 239
|| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 180 GGGGCTATCTAATGGCGAAAATTCGAAACAAAAGCACGATTTCGATATAAATACCGAGTT 239
Query 240 GTTCAACAGT-C--AATGGTTTTGTAGCTTATGTAATGCAACTATGACCTGCGAGCAGGA 296
| ||| ||| | ||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 240 ATACAAGAGTCCTTCATGGTTTTGCAGCTTATGTAATGCAAATATGACCTGCGAGCAGGA 299
Query 297 TTATTTTGCCCATGTCTATGGGAAGAAACACCAAGAGAAAGCAAATGAGGTTGCTGATAT 356
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTATTTTGCCCATGTCTATGGAAAGAAACACCAAGAGAAAGCAAATGAGGTTGCTGATAT 359
Query 357 GGACTACTCGAAACAACAATCTGAACATCCAGCAGTTGACAAGAACAATTTAACACAACA 416
||||||||| ||||||||||||||||| ||| ||||||||||| |||| |||| ||||||
Sbjct 360 GGACTACTCTAAACAACAATCTGAACAACCACCAGTTGACAAGCACAACTTAAAACAACA 419
Query 417 ACCCGACTTAGATATATATGTCGGGTTATCAAACGACTATCCATGGTTCTGTAGCTTGTG 476
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 ACCCGACTTTGATATATATGTCGGGTTATCAAACCACTATCCATGGTTCTGTAGCTTGTG 479
Query 477 TGACATAAACGCTACCAGCGAGCAGACTTTGTTAGCACATGCCAATGGCAAGAAACACCG 536
| |||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||
Sbjct 480 TAACATAATGGCTACCAGCCAGCAGACTTTGTTATCACATGCCAATGGGAAGAAACACCG 539
Query 537 AG-TGAAAGTTGAACGTTTTGATGCTGAACAACAGAAACGACAA-TCAACACAACATTCC 594
|| | || || ||| | |||||||||||||||||| |||||||| | |||||||||||||
Sbjct 540 AGCT-AATGTCGAATGGTTTGATGCTGAACAACAGCAACGACAAGT-AACACAACATTCC 597
Query 595 ACGGTGGATAAGAAGGACTACTCAAAACAACAGATCGAAGTCGATATAAATGTCGGGTTA 654
| |||| |||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 A----GGAT-----GGACAACTCAAAACAACAGATCGAAGTCGATATAAATGTTGGGTTA 648
Query 655 TCCAATTGTTATCCATGGTTTTGTAGCTTGTGTAACGTGAAGGCTACATGCCAGCAGAAT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TCCAATTGTTATCCATGGTTTTGTAGCTTGTGTAACGTGAAGGCTACATGCCAGCAGAAT 708
Query 715 TTGCTATCCCATGCCAATGGCAGAAAACACCGAGAAAATGTCGAATTGTTTGATGCTACA 774
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 709 TTGCTATCCCATGCCAATGGTAGAAAACACCGAGAAAATATCGAATTGTTTGATGCTACA 768
Query 775 CAACAACAACAATTAGAAAAA-ACTACAGTGGATAAAAAGGATACAACTGTCAATGCTTC 833
||||||||||| ||||||||| || |||||||||| |||||||||| || ||||||||
Sbjct 769 CAACAACAACAGTTAGAAAAATCCT-CAGTGGATAAGAAGGATACAATTGAAAATGCTTC 827
Query 834 GGATGGTAATTCCGAACAAAAGAAAGTAGATTTGCTTGTCTCCTCAGGTGTTGCAAATGG 893
||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 828 TGATGGTAATTCCGAACAGAAGAGAGTAGATTTGCTTGTCTCATCAGGTGTTGCAAATGG 887
Query 894 ATATTCACAGGCTC-ACAAAAAGAGAAAGCTAGAGACCTGCGATGAAACATGGAAAAGGG 952
|||| | ||||| | ||||||||||||||||||||| | |||||||||| |||| ||||
Sbjct 888 ATATCCTCAGGC-CGGCAAAAAGAGAAAGCTAGAGACTTTCGATGAAACACGGAACAGGG 946
Query 953 AGGTAGTTCAGGCCgaagaagcaaaaggagggggtgagcaaaagagtgaatcaaagaaag 1012
||||||||||||||||||||||| |||||||||||||| |||| | | | ||| ||
Sbjct 947 AGGTAGTTCAGGCCGAAGAAGCAGAAGGAGGGGGTGAG-AAAA-A--G---C-AAG--AG 996
Query 1013 ccaaaaagcaagacaaagagaagaagagaaagaaggacaagaagcagactaagTCAGACT 1072
|| ||| | ||||| | |||||||||| ||||||||||||| ||||||||
Sbjct 997 -----AA-TAAG----A-AGAAG--G-GAAAGAAGGAAAAGAAGCAGACTATGTCAGACT 1042
Query 1073 CTGATTTCGAGCATGACAAGGAAGATATCAAGCAGCTGTTGGTAGCTTACTCGAAGGAAG 1132
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1043 CTGATTTCGAGTATGACAAGGAAGATATCAAGCAGCTGTTGGTATCTTACTCGAAGGAAG 1102
Query 1133 AGCTTGTTAACCTCATATACAAGACTGCCGAGAAGGGTTCTCGATTGATCTCTGCCATCC 1192
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1103 AGCTTGTGAACCTCATATACAAGACTGCTGAGAAGGGTTCTCGATTGATCTCTGCCATCC 1162
Query 1193 TTGAGTCGGCTGACCGTGACATCGCTCAGCGCAATATATTTGTGCGTGGCTTTGGATGGG 1252
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 TTGAATCGGCTGACCGTGACATCGCTCAGCGCAATATATTTGTGCGTGGCTTTGGATGGG 1222
Query 1253 ACACAACGCAAGAGAACCTCAAGACGGCTTTTGAGTCTTATGGGGAGATAGAGGAGTGCT 1312
|||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 1223 ACACAACGCATGAGAACCTCAAGGCGGCGTTTGAGACTTATGGGGAGATAGAGGAGTGCT 1282
Query 1313 CGGTAGTCATGGACAAGGACACGGGAAGAGGTAAAGGTTACGGGTTTGTGATGTTCAAGA 1372
|||| |||||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 1283 CGGTGGTCATGGACAAGGACACGGGAAGAGGTAAAGGGTATGGGTTTGTGCTGTTCAAGA 1342
Query 1373 CACGGAAGGGAGCGAGAGAGGCATTGAAAAGACCGGAGAAGAGGATGTACAACCGCATCG 1432
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 CGCGGAAAGGAGCAAGAGAGGCATTGAAAAGACCGGAGAAGAGGATGTACAACCGCATCG 1402
Query 1433 TGGTATGTAATCTAGCATCAGAGAAGCCGGGCAAGG-CTGGAAAGGAGCAGGATATGGCT 1491
|||||||||||||||||||| |||||||| | || ||||||||||||||||||||| |
Sbjct 1403 TGGTATGTAATCTAGCATCAAAGAAGCCGT-CTGGGGCTGGAAAGGAGCAGGATATGGTT 1461
Query 1492 GAACCAGTGAATATTGATCTAAC-CAAGATGGCTAATCAAAGTGAAGCAGTCTTGCCCGG 1550
||||| ||||| ||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 1462 GAACCGGTGAAGATTGATCTAACTCA-GATGGCCAATCAAAGTGAAGCAGTCTTGCCCGG 1520
Query 1551 GATCGAACTGGGTCGCGGACATGTACTCGAGAAGATGCACCACCAACAACAACAGACTAT 1610
||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 1521 TCCCGAACTGGGTCACGGACATGTACTCAAGAAGATGCACCACCAGCAACA---GACTAT 1577
Query 1611 GGACATGTTCGGACAGAACATGCCTTTTTATGGATACTCTCATCAGTTTCCTGGTTTTGA 1670
|| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1578 AGATATGTTCGGACAGAACATGCCTTTTTACGGACACTCTCATCAGTTTCCTGGTTTTGA 1637
Query 1671 TCCTATGTATGGTGCATTAAGTGGTAATCAAATGTTAGCTGGTCTACCAAACTATGGTAT 1730
||| ||||||||||||||||||||| | | | | | | || |||||||||
Sbjct 1638 TCCAATGTATGGTGCATTAAGTGGT---C---T---A-C----C-A--AA-CTATGGTAT 1679
Query 1731 GTTTGGCTCGGGTATGATGACGAACCAAGGATCAATGTTGC--C-ACCACCGAATCATTT 1787
|||||||||||||||||||| |||||||||||| ||||||| | |||||||||||||||
Sbjct 1680 GTTTGGCTCGGGTATGATGATGAACCAAGGATCGATGTTGCAGCCACCACCGAATCATTT 1739
Query 1788 AGGCATGGCAGGGCAATATTTTGGTGATGGGGAACAGGCTTGGCATCAGAGATAG 1842
||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 1740 AGGTATGGCAGGGCAATATTTTGGTGATGGGGGACATGCTTGGCATCAGAGGTAG 1794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69171884920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5