BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19385.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319609 jgi|Araly1|319609|fgenesh1_pm.C_scaffold_3002625 1164 0.0
> Ahg319609 jgi|Araly1|319609|fgenesh1_pm.C_scaffold_3002625
Length=852
Score = 1164 bits (630), Expect = 0.0
Identities = 786/856 (92%), Gaps = 32/856 (4%)
Strand=Plus/Plus
Query 115 ATGGTTTGGTTTCAATGCGAAGACTGTGGAGAGAGTCTGAAGAAGCCAAAGGTCCCGTCT 174
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGTTTGGTTTCAATGCGAAGACTGTGGAGAGAGTCTGAAGAAGCCAAAGCTCCCGTCT 60
Query 175 CACTTCAAGATGTGCAGAGCCAACAAGTTATCGTGCATCGATTGTGGAGAAATGTTTGGG 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACTTCAAGATGTGCAGAGCCAACAAGTTATCGTGCATCGATTGTGGAGAAATGTTTGGG 120
Query 235 AGAGATACTGTGCAAGGACATAACCAATGCATTACTGAAGCTGAGAAGTATGGTCCAAAA 294
| |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 121 AAAGATACTGTGCAAGGACATACCCAGTGTATTACTGAAGCTGAGAAGTATGGTCCAAAA 180
Query 295 GGGCAGTCAAAGTCAGCTAATGGAACACCTGCAAAGCCAAAGGACATCTCTAAGCAAGAG 354
||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||| ||
Sbjct 181 GGGCAGTCAAAGTCATCTAATGGCACACCTGCAAAGCCAAAGGATAACTCTAAGCAACAG 240
Query 355 CCTGACTTTGATATTAATGTCGGCTTATCAAACCGATATCCATGGTTTTGCAGTTTATGT 414
|||||||| ||||||| |||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 241 CCTGACTTCGATATTACTGTCGGCTTATCGAACCGATATCCATGGTTTTGTAGTATATGT 300
Query 415 AACACAAAGGCTACTAGCCAGCAGACTTTGCTTGCCCATGCGGATGGGAAGAAGCACCGA 474
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 301 TACACAAAGGCTACTAGCCAGCAGACTCTGCTTGCGCATGCGGATGGGAAGAAGCACCGA 360
Query 475 GGAAAAGCTAAAGCCTTCCATGCTAGGCAACAACAAGAA-C--AATCCA-C-GACTTTGG 529
|||||||| ||||||||||||||||| ||||| ||| | | || ||| | | | |||
Sbjct 361 GGAAAAGCAAAAGCCTTCCATGCTAGACAACAGCAACAGTCTGAA-CCATCCG-CGGTGG 418
Query 530 ATAAC-AAGGATGGAAGTGAAAATGCGTCTAATGTTGATTCAGAACAGAAGAAAGTAGAT 588
||| | ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 419 ATA-CGAAGGATGGAAGCGAAAACGCGTCTAATGGTGATTCAGAACAGAAGAAAGTAGAT 477
Query 589 TTACCTGCCTCCTCAGGTGTTGCGAATGGAGAATCGCAT-CCTGAGAAAAAGAGAAAGCT 647
||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 478 TTACCTGTCTCCTCAAGTGTTGCGAATGGAGAATCGCATGCC-GAGAAAAAGAGAAAGCT 536
Query 648 AGAGACTTTGGATGAAACGAGTGAAGG-------C-----G---AAGAAGCAAAAGGAAG 692
|||||||||||||||||||||| |||| | | ||||||||||||||||
Sbjct 537 AGAGACTTTGGATGAAACGAGTAAAGGTGAGGTACCTCAAGCCGAAGAAGCAAAAGGAAG 596
Query 693 TGATCTAAAGAAAGCAAAGAAGCAGGACCATGAGAAGAAAATCAATTGGAAGAAGTTGAT 752
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGATCTAAAGAAAGCTAAGAAGCAGGACCATGAGAAGAAAATCAATTGGAAGAAGTTGAT 656
Query 753 CACATCGGCTTTGAAGTCTAACGAAGATAAAACTTTGAAGATGAAGAAACTGAAGAAGCT 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CACATCGGCTTTGAAGTCTAACGAAGATAAAACTTTGAAGATGAAGAAACTGAAGAAGCT 716
Query 813 CGTTCTGGAATCTATTGTGGATTCAGGC----C--GAGACAAATCTGAGCTTAAGGCAGA 866
||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 717 TGTTCTGGAATCTATTGTGGATTCAGGCATAACTCGAGACAAATCTGAGCTTAAGGCAGA 776
Query 867 GCTAGAACTAAAGGTGAATTTGAGCTCCAGATTCACAGTTGATGGGAAGTATGTGAAACT 926
||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 777 GCTAGTGCTAAAGGTGAATTCAAGCTCCAGATTCACGGTTGATGGGAAGTATGTGAAACT 836
Query 927 TGTGGCTAAAGATTGA 942
||||||||||||||||
Sbjct 837 TGTGGCTAAAGATTGA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5