BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G19400.1 Length=2070 Score E Sequences producing significant alignments: (Bits) Value Ahg343256 jgi|Araly1|343256|fgenesh1_pg.C_scaffold_3003019 2649 0.0 > Ahg343256 jgi|Araly1|343256|fgenesh1_pg.C_scaffold_3003019 Length=1584 Score = 2649 bits (1434), Expect = 0.0 Identities = 1534/1584 (97%), Gaps = 0/1584 (0%) Strand=Plus/Plus Query 121 ATGGAGAATCAAGAGGAAGATGAGGTGGTGCTGGCGAAGGTGACGTCGGAGGTTGAGGAT 180 ||||| |||||||| || || ||||||||| |||||||||||||| |||||| ||||||| Sbjct 1 ATGGAAAATCAAGAAGACGAGGAGGTGGTGGTGGCGAAGGTGACGCCGGAGGCTGAGGAT 60 Query 181 AATTTTGAGGATGAAGGGTTGGTTTCAAATTCAACATTGGAGAAAGTTGCTGCAGCGAAG 240 | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 AGTTTTGAGGATGAAGGGTTGGTTTCAAATTCGACATTGGAGAAAGTTGCTGCAGCGAAG 120 Query 241 AAGTATATTGAAAACCATTACAATAGACGCATGAGACACATTCAACAACGTAAAGAAAGG 300 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 AAGTATATTGAAAACCATTACAATAGACGCATGAGACATATTCAACAACGTAAAGAAAGG 180 Query 301 CGTTGGGTGCTAGAACAAAAGATTGCATCTTTAGATGTATCAGAAAAAGAACAACTCGAG 360 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGTTTGGTGCTAGAGCAAAAGATTGCATCTTTAGATGTATCAGAAAAAGAACAACTCGAG 240 Query 361 TTGCTGGAGGATTTGCAGAGGAAAGAGACAGAGTATACTAGATTAATGAGGAACAGGCTT 420 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTGCTGGAGGACTTGCAGAGGAAAGAGACAGAGTATACTAGATTAATGAGGAACAGGCTT 300 Query 421 TGCGTTGACGATTTTGATCTTCTGAGTATTATCGGGAGAGGAGCTTTTGGTGAGGTAAGA 480 |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 301 TGCGTTGATGATTTTGATCTTCTGAGTATTATCGGTAGAGGGGCTTTTGGTGAGGTAAGA 360 Query 481 CTCTGCCGTGAGAAAAAGACAGGCAACATTTATGCTATGAAGAAGCTTAAGAAGTCTGAA 540 |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| Sbjct 361 CTCTGCCGTGAGAAAAAGACTGGCAACATTTATGCCATGAAGAAGCTAAAGAAGTCTGAA 420 Query 541 ATGCTTAGTAGGGGGCAAGTTGAACATGTTAGAGCTGAGAGGAACTTGCTAGCCGAAGTT 600 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 421 ATGCTTAGTAGGGGGCAAGTTGAACATGTTAGAGCTGAGAGGAACTTGCTAGCAGAAGTT 480 Query 601 GCTAGTGACTGTATTGTGAAGCTTTATTATTCGTTCCAAGATCCAGAATATTTGTACCTT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCTAGTGACTGTATTGTGAAGCTTTATTATTCGTTCCAAGATCCAGAATATTTGTACCTT 540 Query 661 ATCATGGAGTATCTGTCTGGTGGTGATGTGATGACTTTGCTTATGAGGGAAGAGACTTTG 720 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ATCATGGAGTATCTCTCTGGTGGTGATGTGATGACTTTGCTTATGAGGGAAGAGACTTTG 600 Query 721 ACGGAAACTGTGGCTCGGTTTTACATTGCCCAAAGTGTTTTGGCTATTGAGTCCATACAT 780 || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 601 ACTGAAACCGTGGCTCGGTTTTACATTGCCCAAAGTGTTTTGGCTATTGAGTCGATACAT 660 Query 781 AAGCATAATTATGTTCACAGGGATATAAAACCAGACAATCTTCTGTTGGACAAGTATGGT 840 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 661 GAGCATAATTATGTTCACAGGGATATTAAACCAGACAATCTTCTGTTGGACAAGAATGGT 720 Query 841 CATATGAAGCTGTCGGATTTTGGTCTTTGTAAGCCTCTCGATTGTAGAAATATTTCGGCT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CATATGAAGCTGTCGGATTTTGGTCTTTGTAAGCCTCTCGATTGTAGAAATATTTCGGCT 780 Query 901 ATGAACGTAAATGAACCTTTGAATGATGAGAATATAAATGAATCAATCGATGGTGATGAG 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 ATGAACGTAAATGAACCTTTGAATGATGAGAATATAAATGAATCAATCGATGGTGATGAG 840 Query 961 AACTGCTCGATAGGACGTCGTGGAAGGCGTTGGAAGAGCCCACTGGAACAGCTGCAGCAT 1020 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 841 AACTGCTCGATAGGACGTCGTGGAAGGCGTTGGAAGAGCCCATTGGAACAGCTGCAGCAT 900 Query 1021 TGGCAGATAAACAGAAGAAAACTGGCATATTCTACGGTAGGTACCCCAGATTATATTGCA 1080 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 901 TGGCAGATAAACCGAAGAAAACTGGCATATTCTACGGTAGGTACCCCCGATTATATTGCA 960 Query 1081 CCAGAGGTGTTGCTGAAGAAGGGATACGGTGTAGAGTGTGACTGGTGGTCTTTGGGGGCC 1140 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CCTGAGGTGTTGCTGAAGAAGGGATACGGTGTAGAGTGTGACTGGTGGTCTTTGGGGGCC 1020 Query 1141 ATTATGTATGAGATGCTCGTTGGTTATCCACCATTTTACTCCGATGACCCTGTAACAACA 1200 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct 1021 ATTATGTATGAGATGCTTGTCGGTTATCCACCATTTTACTCCGATGACCCCGTAACAACA 1080 Query 1201 TGTAGAAAGATTGTGAGCTGGAGAACTCATTTAGTATTCCCCGAGGGTGCAAGGTTGACA 1260 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1081 TGTAGAAAGATTGTGAGCTGGAGAACTCATTTAGTATTCCCCGAGGACGCAAGGTTGACA 1140 Query 1261 CCTGAGGCAAGAGATCTCATTTGTAGGTTGCTTTGTGATTCTGAGCACAGGCTTGGTTCT 1320 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1141 CCTGAGGCAAGAGATCTCATCTGTAGGTTGCTTTGTGATTCTGAGCATAGGCTTGGTTCT 1200 Query 1321 CATGGAGCCGGAGCCGAGCAAATCAAAGCTCATACTTGGTTCAAAGATGTGGAATGGGAA 1380 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1201 CATGGAGCCGGAGCCGAGCAAATCAAAGCTCATCCTTGGTTCAAAGATGTGGAATGGGAA 1260 Query 1381 AAACTCTATGAGATGGATGCAGCTTTTAAGCCAGTGGTCAATGGAGAACTTGATACCCAG 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 AAACTCTATGAGATGGATGCAGCTTTTAAGCCAGTGGTCAATGGAGAACTTGATACCCAG 1320 Query 1441 AATTTTATGAAATTCGATGAGGTGGAGTGTCCAAAACCAGCAAGAACAGGATCTGGACCG 1500 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1321 AATTTTATGAAATTCGATGAGGTGGAGTGTCCAAGACCAGCAAGAACAGGATCTGGACCG 1380 Query 1501 TCATGGAAGGTGAGCATAACCCCTCAAAATATCAATTTTGTGGGCTATACGTACAGAAAC 1560 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1381 TCGTGGAAGGTGAGCATAACCCCTCAAAATATCAATTTTGTGGGCTATACATACAGAAAC 1440 Query 1561 TTTGACGCTGTTCGTGGTTCTCGCCATTCTTTAGATATCAAAGGAAGCGTTTCACCTCCA 1620 |||||||| || ||||||||||||||||||||||||||||||||| || |||| || ||| Sbjct 1441 TTTGACGCGGTCCGTGGTTCTCGCCATTCTTTAGATATCAAAGGAGGCATTTCGCCACCA 1500 Query 1621 CGCTCATCAACTGACTCTACCCGAAGTGACTCTGCAATTGATTACACAAAACTCTCAACT 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 CGCTCATCAACTGACTCTACCCGAAGTGACTCTGCAATTGATTACACAAAACTCTCAACT 1560 Query 1681 GGTGGCGATGGCTCACAACAATAA 1704 ||||| ||||| |||||||||||| Sbjct 1561 GGTGGTGATGGTTCACAACAATAA 1584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77856460780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5