BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19400.1
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343256 jgi|Araly1|343256|fgenesh1_pg.C_scaffold_3003019 2649 0.0
> Ahg343256 jgi|Araly1|343256|fgenesh1_pg.C_scaffold_3003019
Length=1584
Score = 2649 bits (1434), Expect = 0.0
Identities = 1534/1584 (97%), Gaps = 0/1584 (0%)
Strand=Plus/Plus
Query 121 ATGGAGAATCAAGAGGAAGATGAGGTGGTGCTGGCGAAGGTGACGTCGGAGGTTGAGGAT 180
||||| |||||||| || || ||||||||| |||||||||||||| |||||| |||||||
Sbjct 1 ATGGAAAATCAAGAAGACGAGGAGGTGGTGGTGGCGAAGGTGACGCCGGAGGCTGAGGAT 60
Query 181 AATTTTGAGGATGAAGGGTTGGTTTCAAATTCAACATTGGAGAAAGTTGCTGCAGCGAAG 240
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AGTTTTGAGGATGAAGGGTTGGTTTCAAATTCGACATTGGAGAAAGTTGCTGCAGCGAAG 120
Query 241 AAGTATATTGAAAACCATTACAATAGACGCATGAGACACATTCAACAACGTAAAGAAAGG 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AAGTATATTGAAAACCATTACAATAGACGCATGAGACATATTCAACAACGTAAAGAAAGG 180
Query 301 CGTTGGGTGCTAGAACAAAAGATTGCATCTTTAGATGTATCAGAAAAAGAACAACTCGAG 360
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTTTGGTGCTAGAGCAAAAGATTGCATCTTTAGATGTATCAGAAAAAGAACAACTCGAG 240
Query 361 TTGCTGGAGGATTTGCAGAGGAAAGAGACAGAGTATACTAGATTAATGAGGAACAGGCTT 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGCTGGAGGACTTGCAGAGGAAAGAGACAGAGTATACTAGATTAATGAGGAACAGGCTT 300
Query 421 TGCGTTGACGATTTTGATCTTCTGAGTATTATCGGGAGAGGAGCTTTTGGTGAGGTAAGA 480
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 301 TGCGTTGATGATTTTGATCTTCTGAGTATTATCGGTAGAGGGGCTTTTGGTGAGGTAAGA 360
Query 481 CTCTGCCGTGAGAAAAAGACAGGCAACATTTATGCTATGAAGAAGCTTAAGAAGTCTGAA 540
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 361 CTCTGCCGTGAGAAAAAGACTGGCAACATTTATGCCATGAAGAAGCTAAAGAAGTCTGAA 420
Query 541 ATGCTTAGTAGGGGGCAAGTTGAACATGTTAGAGCTGAGAGGAACTTGCTAGCCGAAGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 ATGCTTAGTAGGGGGCAAGTTGAACATGTTAGAGCTGAGAGGAACTTGCTAGCAGAAGTT 480
Query 601 GCTAGTGACTGTATTGTGAAGCTTTATTATTCGTTCCAAGATCCAGAATATTTGTACCTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTAGTGACTGTATTGTGAAGCTTTATTATTCGTTCCAAGATCCAGAATATTTGTACCTT 540
Query 661 ATCATGGAGTATCTGTCTGGTGGTGATGTGATGACTTTGCTTATGAGGGAAGAGACTTTG 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATCATGGAGTATCTCTCTGGTGGTGATGTGATGACTTTGCTTATGAGGGAAGAGACTTTG 600
Query 721 ACGGAAACTGTGGCTCGGTTTTACATTGCCCAAAGTGTTTTGGCTATTGAGTCCATACAT 780
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 ACTGAAACCGTGGCTCGGTTTTACATTGCCCAAAGTGTTTTGGCTATTGAGTCGATACAT 660
Query 781 AAGCATAATTATGTTCACAGGGATATAAAACCAGACAATCTTCTGTTGGACAAGTATGGT 840
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 661 GAGCATAATTATGTTCACAGGGATATTAAACCAGACAATCTTCTGTTGGACAAGAATGGT 720
Query 841 CATATGAAGCTGTCGGATTTTGGTCTTTGTAAGCCTCTCGATTGTAGAAATATTTCGGCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CATATGAAGCTGTCGGATTTTGGTCTTTGTAAGCCTCTCGATTGTAGAAATATTTCGGCT 780
Query 901 ATGAACGTAAATGAACCTTTGAATGATGAGAATATAAATGAATCAATCGATGGTGATGAG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATGAACGTAAATGAACCTTTGAATGATGAGAATATAAATGAATCAATCGATGGTGATGAG 840
Query 961 AACTGCTCGATAGGACGTCGTGGAAGGCGTTGGAAGAGCCCACTGGAACAGCTGCAGCAT 1020
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 AACTGCTCGATAGGACGTCGTGGAAGGCGTTGGAAGAGCCCATTGGAACAGCTGCAGCAT 900
Query 1021 TGGCAGATAAACAGAAGAAAACTGGCATATTCTACGGTAGGTACCCCAGATTATATTGCA 1080
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 TGGCAGATAAACCGAAGAAAACTGGCATATTCTACGGTAGGTACCCCCGATTATATTGCA 960
Query 1081 CCAGAGGTGTTGCTGAAGAAGGGATACGGTGTAGAGTGTGACTGGTGGTCTTTGGGGGCC 1140
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCTGAGGTGTTGCTGAAGAAGGGATACGGTGTAGAGTGTGACTGGTGGTCTTTGGGGGCC 1020
Query 1141 ATTATGTATGAGATGCTCGTTGGTTATCCACCATTTTACTCCGATGACCCTGTAACAACA 1200
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1021 ATTATGTATGAGATGCTTGTCGGTTATCCACCATTTTACTCCGATGACCCCGTAACAACA 1080
Query 1201 TGTAGAAAGATTGTGAGCTGGAGAACTCATTTAGTATTCCCCGAGGGTGCAAGGTTGACA 1260
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 TGTAGAAAGATTGTGAGCTGGAGAACTCATTTAGTATTCCCCGAGGACGCAAGGTTGACA 1140
Query 1261 CCTGAGGCAAGAGATCTCATTTGTAGGTTGCTTTGTGATTCTGAGCACAGGCTTGGTTCT 1320
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1141 CCTGAGGCAAGAGATCTCATCTGTAGGTTGCTTTGTGATTCTGAGCATAGGCTTGGTTCT 1200
Query 1321 CATGGAGCCGGAGCCGAGCAAATCAAAGCTCATACTTGGTTCAAAGATGTGGAATGGGAA 1380
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1201 CATGGAGCCGGAGCCGAGCAAATCAAAGCTCATCCTTGGTTCAAAGATGTGGAATGGGAA 1260
Query 1381 AAACTCTATGAGATGGATGCAGCTTTTAAGCCAGTGGTCAATGGAGAACTTGATACCCAG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AAACTCTATGAGATGGATGCAGCTTTTAAGCCAGTGGTCAATGGAGAACTTGATACCCAG 1320
Query 1441 AATTTTATGAAATTCGATGAGGTGGAGTGTCCAAAACCAGCAAGAACAGGATCTGGACCG 1500
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1321 AATTTTATGAAATTCGATGAGGTGGAGTGTCCAAGACCAGCAAGAACAGGATCTGGACCG 1380
Query 1501 TCATGGAAGGTGAGCATAACCCCTCAAAATATCAATTTTGTGGGCTATACGTACAGAAAC 1560
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1381 TCGTGGAAGGTGAGCATAACCCCTCAAAATATCAATTTTGTGGGCTATACATACAGAAAC 1440
Query 1561 TTTGACGCTGTTCGTGGTTCTCGCCATTCTTTAGATATCAAAGGAAGCGTTTCACCTCCA 1620
|||||||| || ||||||||||||||||||||||||||||||||| || |||| || |||
Sbjct 1441 TTTGACGCGGTCCGTGGTTCTCGCCATTCTTTAGATATCAAAGGAGGCATTTCGCCACCA 1500
Query 1621 CGCTCATCAACTGACTCTACCCGAAGTGACTCTGCAATTGATTACACAAAACTCTCAACT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CGCTCATCAACTGACTCTACCCGAAGTGACTCTGCAATTGATTACACAAAACTCTCAACT 1560
Query 1681 GGTGGCGATGGCTCACAACAATAA 1704
||||| ||||| ||||||||||||
Sbjct 1561 GGTGGTGATGGTTCACAACAATAA 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77856460780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5