BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19410.1
Length=2406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319606 jgi|Araly1|319606|fgenesh1_pm.C_scaffold_3002622 3421 0.0
> Ahg319606 jgi|Araly1|319606|fgenesh1_pm.C_scaffold_3002622
Length=2394
Score = 3421 bits (1852), Expect = 0.0
Identities = 2225/2402 (93%), Gaps = 38/2402 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGTGATGCTGACGCAAGAAATGAGTGGCGGTGGTGGTCCAAAGGCGGAAGAGGGT 60
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1 ATGGTGGTGATGTTGACGCAAGAAATGAGTGGTGGTGGTGGTCCAAAGGCAGAAGACGGC 60
Query 61 CAGCTGTTTGTGGCGGTGGCCGTGAAGGGTTTGATCGGAGACAAATTAGGCGGTGCAGGA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CAGTTGTTTGTGGCGGTGGCCGTGAAGGGTTTGATCGGAGACAAATTAGGCGGCGCAGGA 120
Query 121 AGTCGTCGTGCCGTACGGTGGGCTGTCGATAATCTTTTACCGAAGGCTGATAAATTTGTG 180
|| || ||||||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 121 AGCCGCCGTGCCGTACGGTGGGCAGTCGATAATCTTTTACCTAAGGCTGATAGGTTTGTG 180
Query 181 ATGATCCACGTCATCCCTACCATTACTTCTATTCCTACTCCGAATATTTTGATATTAATG 240
||||||||||||||||| |||||||||||||||||||| || | | || ||||
Sbjct 181 ATGATCCACGTCATCCCCACCATTACTTCTATTCCTAC-CC--CCA----G-TA-AAATG 231
Query 241 TTTACGAGAATGTGGGTTGTTACAGCCGGAGATAGATTGCCGGTGGAAGAAGTGGAGGAG 300
| | | | | |||| | || |||||| |||||||||||||||||||||||||||
Sbjct 232 --T-C-CG--T-T--GTTG-T--AGACGGAGAGAGATTGCCGGTGGAAGAAGTGGAGGAG 279
Query 301 AGTGTGGTGGAAATGTATGTAAGAGACGTGAAAAAAGAATATGAAACAGTCTTTGTTCCC 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 280 AGTGTGGTGGAAATGTATGTAAGAGACGTGAAAAAAGAATTTGAAACAGTCTTCGTTCCC 339
Query 361 TTTTTGAAAATGTGCAAGAGTACTAGGAGTACCAAGCGATATTTTCGGTCTAGGAGAACA 420
|| |||||||| |||||||||| ||| ||||||||| | | ||| || | |||| ||
Sbjct 340 TTCTTGAAAATATGCAAGAGTAGTAGTAGTACCAAG-GTTGGTTT-AGT-TTTGAGAGCA 396
Query 421 AAAGGTACAGGAGTACCACTGACCGTTTTAAGATACGCACCAGAAACATGTGAAGTATAC 480
| |||| ||||||||||| |||| || |||| ||||||||||||||||||||||||||||
Sbjct 397 AGAGGTCCAGGAGTACCATTGACTGTCTTAAAATACGCACCAGAAACATGTGAAGTATAC 456
Query 481 ATTGTGTGTAAAGACAGAATCACTACAAAATCTATGGATCCATTAATCAACCGAGAGCCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 457 ATTGTGTGTAAAGACAGAATCACTACAAAATCTATGGATCCATTAATCAACAGAGAGCCG 516
Query 541 TGCACAAGTCCACACGCAGCCGCGACTGCCCATGACTTCTTGAGAGACTGGGCGGCTAGT 600
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 517 TGCACAAGTCCATACGCAGCCGCGACTACCCATGACTTCTTGAGAGACTGGGCGGCTAGT 576
Query 601 TTCCACACTCTACGGTCTCCAACGTTACCCGATCCTCGACAGTCAACTGAGGCAGGAACA 660
||||| ||||||||||||||| | ||| |||| ||||||||||| ||||||||||| ||
Sbjct 577 TTCCAGACTCTACGGTCTCCATCATTATCCGAGCCTCGACAGTCCACTGAGGCAGGCACG 636
Query 661 AGGAGGTCAGCATCGGCAAGAGAGCTGAGATTTGAGGCATTAAGCCTTACTTGTAATAAA 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 637 AGGAGGTCAGCATCGGCAAGAGAGCTGAGATTTGAGGCATTAAGCCTCACTTGTAATAAA 696
Query 721 CCCAAAACGCCTCAAAGTAGTAAGGCTTCTAGTGCAACAACTCCAGAGATTTTTAGGCGA 780
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 697 CCCAAAACGCCTCAAAGTAGTAAGGCTTCTAGTGCAACAATTCCAGAGATTGTTAGGCGG 756
Query 781 C-GGAGAGGATCCGATATTCCTCAGCTGAATTACTCAGATTTTGATAAAACATGTACC-A 838
| | | |||||||||||||| ||||| |||||||||||||||| | |||||| ||| |
Sbjct 757 CATG-GCGGATCCGATATTCCGCAGCTAAATTACTCAGATTTTGTTCAAACATACACCGA 815
Query 839 AGCCCCAATCAAATGTTGAGAACATCGTTAGCGAACACCGAGACTCTGATCGTTCACCCC 898
| |||| ||| ||| |||||| |||||||||||| || ||||||||||||||||||||
Sbjct 816 A-CCCCCATCGAATCTTGAGATCATCGTTAGCGAGCAGATAGACTCTGATCGTTCACCCC 874
Query 899 CGGAAACATCAAGAAAATCCAAGAAGGTTGAGATTGA-AGAAGAGGTCGAACGTTTGAAG 957
||| ||||||||| ||||||||||||||||||||| | || |||||| ||||||||||||
Sbjct 875 CGGGAACATCAAGCAAATCCAAGAAGGTTGAGATT-ATAGCAGAGGTGGAACGTTTGAAG 933
Query 958 AATGAGCTACAAAGTACAGTCTTTAAATATAAACAAGCTTGTGAAGAGCTCTTCTCCACA 1017
|| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 934 AAGGAGCTACAAAGTACAGTCACTAAGTATAAACAAGCTTGTGAAGAGCTTTTCTCCACA 993
Query 1018 CAAAACAAGGTTAAAATGCTTTCGACTGAATATTTGAATGAATCTAAAAGAGTGAACAAT 1077
|||||||||||| |||||||||||||||||| || ||| ||| |||||||||||||||||
Sbjct 994 CAAAACAAGGTTCAAATGCTTTCGACTGAATGTTCGAACGAAGCTAAAAGAGTGAACAAT 1053
Query 1078 GCTGTGGAGAAAGAAGAGTTGCAGAGGAACACCGCGGCGCTGGAGAAAGAGCGGTACATG 1137
|| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1054 GCCGTGGAGAAAGAAGAGTTGGAGAGGAAAACCGCGGCGCTGGAGAAAGAGCGGTACATG 1113
Query 1138 AAGGCGGTGAAAGAGGTCGAAACCGCGAAAGCGTTGCTCGCAAGAGAGTTTTGTCAGCGA 1197
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1114 AAGGCGGTGAAAGAGGTAGAAACCGCAAAAGCATTGCTCGCAAGAGAGTTTTGTCAGCGA 1173
Query 1198 CAGATCGCGGAGGTGAATGCTTTAAGGACTTACTTGGAGAAGAAGAAAGTGATCGATCAG 1257
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 CAAATAGCGGAAGTGAATGCTTTAAGGACTTACTTGGAGAAGAAGAAAGTGATCGATCAG 1233
Query 1258 CTTTTAGGGACTGATCACCGGTACAGAAAATACACAATTGAGGAAATTGTAACAGCCACA 1317
|||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1234 CTTTTAGGAACTGATCACCGGTATAGAAAATACACAATCGAGGATATTGTAACAGCCACA 1293
Query 1318 GAAGGATTCTCGCCAGAGAAAGTGATTGGAGAAGGAGGATACGGGAAAGTTTACCAATGT 1377
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1294 GAAGGATTCTCGCCAGAGAAAGTGATTGGAGAAGGAGGATACGGAAAAGTATACCAATGT 1353
Query 1378 AGCCTTGATAGTACTCCGGCGGCTGTTAAAGTTGTCCGGCTAGATACACCGGAGAAGAAA 1437
||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct 1354 AGCCTTGATAGTACTCCGGCGGCTGTTAAGGTCGTCCGGCTAGATACGCCGGAGAAAAAA 1413
Query 1438 CAAGAGTTCTTGAAAGAGGTTGAGGTTCTAAGCCAACTCCGACACCCACACGTGGTTCTC 1497
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1414 CAAGAGTTCTTGCAAGAGGTGGAGGTTCTAAGCCAACTCCGACACCCACACGTGGTTCTT 1473
Query 1498 CTCCTCGGAGCTTGTCCGGAGAATGGTTGTTTGGTTTACGAGTACTTGGAAAATGGAAGC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 CTCCTCGGAGCTTGTCCGGAGAATGGTTGTTTGGTTTACGAGTACTTGGAAAATGGAAGC 1533
Query 1558 CTCGAGGAATATATATTTCACCGAAAAAATAAACCGCCTTTGCCTTGGTTTATCCGGTTT 1617
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1534 CTCGAGGAATATATATTTCACCGGAAAAATAAACCGCCTTTGCCTTGGTTTATCCGGTTT 1593
Query 1618 AGGGTAATTTTCGAGGTAGCTTGCGGTTTGGCCTTCTTACACAGCTCTAAACCGGAACCA 1677
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1594 AGGGTAATTTTCGAGGTGGCTTGCGGTTTAGCCTTCTTACACAGCTCTAAACCGGAACCA 1653
Query 1678 ATTGTTCACCGTGACT-TAAAACCGGGAAATATCTTGTTAAACCGGAACTACGTTAGCAA 1736
|||||||||||||| | | ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1654 ATTGTTCACCGTGA-TCTCAAACCGGGAAACATCTTGTTAAACCGGAACTACGTGAGCAA 1712
Query 1737 AATCGCTGACGTTGGCCTAGCCAAGCTGGTTACGGATGTTGCACCCGATAATGTCACGAT 1796
||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1713 AATTGCTGACGTTGGATTAGCCAAGCTGGTTACGGATGTTGCACCGGATAATGTCACAAT 1772
Query 1797 GTACCGAAACTCGGTTCTTGCCGGTACATTGCATTATATTGATCCAGAATACCA-CAGAA 1855
|||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 1773 GTACAAAAACTCGGTTCTTGCCGGTACATTGCATTATATTGATCCGGAATACCATC-GAA 1831
Query 1856 CCGGAACAATTAGACCAAAGTCGGATCTATATGCGTTCGGCATAATCATTCTTCAGTTGT 1915
||||||||||||||||||| |||||||| || |||||||||||||| ||||||||| ||
Sbjct 1832 CCGGAACAATTAGACCAAAATCGGATCTTTACGCGTTCGGCATAATTATTCTTCAGCTGG 1891
Query 1916 TGACGGCTCGT-AACCCGAGCGGGA-TTGTACCAGCGGTCGAAAACGCGGTAAAGAAAGG 1973
||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1892 TGACGGCTCGTCAA-CCGAGC-GGACTTGTACCAGCGGTCGAAAACGCGGTAAAGAAAGG 1949
Query 1974 GACGTTAACCGAAATGCTAGATAAATCGGTTACCGATTGGCCTTTGGCAGAAACCGAGGA 2033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1950 GACGTTAACCGAAATGCTAGATAAATCGGTTACCGATTGGCCTTTGGCAGAAACCGAAGA 2009
Query 2034 ATTGGCTCGGATCGGTTTAAAATGTGCTGAATTTCGATGCCGAGATAGACCGGATCTTAA 2093
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 2010 ATTGGCTCGGATCGGTTTAAAATGTGCAGAATTTCGATGCCGGGATAGACCGGATCTTAA 2069
Query 2094 ATCAGAGGTTATACCGGTTTTGAAACGGCTTGTGGAGACGGCGAATTCGAAAGTAAAGAA 2153
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2070 ATCAGAGGTTATACCGGTTTTGAAACGGCTTGTGGAGACGGCAAATTCGAAAATAAAGAA 2129
Query 2154 AGAAGGAAGCAATTTACGTGCACCGAGTCATTACTTCTGTCCAATCTTACGGGAGATAAT 2213
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||
Sbjct 2130 AGAAGGAAGCAATTTACGTGCACCAAGTAATTACTTCTGTCCAATTTTACGGGAGATAAT 2189
Query 2214 GGAGGAGCCAGAGATTGCTGCCGATGGATTCACGTACGAGAGGAAAGCGATCTTAGCGTG 2273
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2190 GGAGGAGCCAGAGATTGCTGCTGATGGATTCACGTACGAGAGGAAAGCGATCTTAGCGTG 2249
Query 2274 GCTTGAGAAACATAACATTTCACCGGTGACTCGACAAAAGCTAGACCACTTCAAGCTCAC 2333
|||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2250 GCTTGAGAAACACAACATTTCACCAGTGACTCGACAAAAGCTCGACCACTTCAAGCTCAC 2309
Query 2334 ACCGAACCATACGCTCCGGTCTGCGATTCGCGATTGGAAATCAAGAGTCCGGTTTTCTAA 2393
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2310 ACCGAACCATACACTCCGGTCTGCGATTCGCGATTGGAAATCAAGAGTCCGGTTTTCTAA 2369
Query 2394 TG 2395
||
Sbjct 2370 TG 2371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90654783100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5